[med-svn] [bwa] branch master updated (6cb4dfc -> 58f6a77)

[Steffen Möller]

This is an automated email from the git hooks/post-receive script.

moeller pushed a change to branch master
in repository bwa.

      from  6cb4dfc   Merge branch 'master' of ssh://anonscm.debian.org:/git/debian-med/bwa
       new  6b5aa13   New upstream version 0.7.16
       new  4a41d89   Updated version 0.7.16 from 'upstream/0.7.16'
       new  58f6a77   Update to 0.7.16

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 NEWS.md                                   | 19 +++++++++++-
 README.md                                 | 27 ++++++++---------
 bntseq.c                                  |  6 ++--
 bwa.1                                     | 49 ++++++++++++++++++++++++++++---
 bwa.c                                     | 30 ++++++++++++++-----
 bwakit/run-bwamem                         |  7 +++--
 bwakit/run-gen-ref                        |  2 +-
 bwamem.c                                  | 48 +++++++++++++++++++++++++-----
 bwamem.h                                  |  1 +
 bwamem_pair.c                             |  5 ++++
 bwape.c                                   |  5 ++--
 bwase.c                                   |  9 ++++--
 bwt_gen.c                                 | 21 ++++++-------
 bwt_lite.c                                |  2 +-
 bwtaln.c                                  |  5 ++--
 bwtgap.c                                  |  2 +-
 bwtgap.h                                  |  6 ++--
 bwtindex.c                                |  4 +--
 bwtsw2_pair.c                             |  8 ++++-
 debian/changelog                          |  8 +++--
 debian/control                            |  2 +-
 debian/patches/check_for_nan.patch        |  4 ++-
 debian/patches/fix_build_on_freebsd.patch |  8 +++--
 debian/patches/series                     |  6 ++--
 debian/upstream/metadata                  |  1 -
 fastmap.c                                 | 11 +++++--
 kthread.c                                 |  1 +
 main.c                                    |  2 +-
 malloc_wrap.c                             |  8 ++---
 29 files changed, 218 insertions(+), 89 deletions(-)

-- 
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