[med-svn] [bwa] branch upstream updated (9b4cfaa -> 6b5aa13)

[Steffen Möller]

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moeller pushed a change to branch upstream
in repository bwa.

      from  9b4cfaa   Imported Upstream version 0.7.15
      adds  6b5aa13   New upstream version 0.7.16

No new revisions were added by this update.

Summary of changes:
 NEWS.md            | 19 ++++++++++++++++++-
 README.md          | 27 +++++++++++++--------------
 bntseq.c           |  6 +++---
 bwa.1              | 49 +++++++++++++++++++++++++++++++++++++++++++++----
 bwa.c              | 30 ++++++++++++++++++++++--------
 bwakit/run-bwamem  |  7 ++++---
 bwakit/run-gen-ref |  2 +-
 bwamem.c           | 48 ++++++++++++++++++++++++++++++++++++++++--------
 bwamem.h           |  1 +
 bwamem_pair.c      |  5 +++++
 bwape.c            |  5 +++--
 bwase.c            |  9 ++++++---
 bwt_gen.c          | 21 +++++++++------------
 bwt_lite.c         |  2 +-
 bwtaln.c           |  5 +++--
 bwtgap.c           |  2 +-
 bwtgap.h           |  6 +++---
 bwtindex.c         |  4 ++--
 bwtsw2_pair.c      |  8 +++++++-
 fastmap.c          | 11 ++++++++---
 kthread.c          |  1 +
 main.c             |  2 +-
 malloc_wrap.c      |  8 ++++----
 23 files changed, 201 insertions(+), 77 deletions(-)

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