[med-svn] [phast] branch master updated (6e872b2 -> a79a6dc)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository phast.

      from  6e872b2   Depend on packages from src:lapack instead of obsolete src:clapack.
       new  dfe6dcd   Add manually edited manpages
       new  a79a6dc   Standard-Version

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/changelog                      |   2 +-
 debian/control                        |   2 +-
 debian/help2man/00_README             |   9 +
 debian/help2man/all_dists.1           |  29 ++
 debian/help2man/base_evolve.1         |  49 +++
 debian/help2man/chooseLines.1         |  13 +
 debian/help2man/clean_genes.1         | 188 +++++++++++
 debian/help2man/consEntropy.1         |  43 +++
 debian/help2man/convert_coords.1      |  39 +++
 debian/help2man/display_rate_matrix.1 |  86 ++++++
 debian/help2man/dless.1               | 101 ++++++
 debian/help2man/dlessP.1              |  41 +++
 debian/help2man/draw_tree.1           |  25 ++
 debian/help2man/eval_predictions.1    |  85 +++++
 debian/help2man/exoniphy.1            | 222 +++++++++++++
 debian/help2man/hmm_train.1           |  86 ++++++
 debian/help2man/hmm_tweak.1           |  59 ++++
 debian/help2man/hmm_view.1            |  33 ++
 debian/help2man/indelFit.1            |  55 ++++
 debian/help2man/indelHistory.1        |  43 +++
 debian/help2man/maf_parse.1           | 172 +++++++++++
 debian/help2man/makeHKY.1             |  32 ++
 debian/help2man/modFreqs.1            |  19 ++
 debian/help2man/msa_diff.1            |  31 ++
 debian/help2man/msa_split.1           | 228 ++++++++++++++
 debian/help2man/msa_view.1            | 378 +++++++++++++++++++++++
 debian/help2man/pbsDecode.1           |  37 +++
 debian/help2man/pbsEncode.1           |  30 ++
 debian/help2man/pbsScoreMatrix.1      | 106 +++++++
 debian/help2man/pbsTrain.1            | 157 ++++++++++
 debian/help2man/phast.1               |  49 +++
 debian/help2man/phastBias.1           | 172 +++++++++++
 debian/help2man/phastCons.1           | 445 ++++++++++++++++++++++++++
 debian/help2man/phastMotif.1          | 112 +++++++
 debian/help2man/phastOdds.1           | 140 +++++++++
 debian/help2man/phyloBoot.1           | 172 +++++++++++
 debian/help2man/phyloFit.1            | 565 ++++++++++++++++++++++++++++++++++
 debian/help2man/phyloP.1              | 305 ++++++++++++++++++
 debian/help2man/prequel.1             | 201 ++++++++++++
 debian/help2man/refeature.1           |  96 ++++++
 debian/help2man/stringiphy.1          |  17 +
 debian/help2man/treeGen.1             |  34 ++
 debian/help2man/tree_doctor.1         | 151 +++++++++
 debian/manpages                       |   1 +
 debian/rules                          |  13 -
 45 files changed, 4858 insertions(+), 15 deletions(-)
 create mode 100644 debian/help2man/00_README
 create mode 100644 debian/help2man/all_dists.1
 create mode 100644 debian/help2man/base_evolve.1
 create mode 100644 debian/help2man/chooseLines.1
 create mode 100644 debian/help2man/clean_genes.1
 create mode 100644 debian/help2man/consEntropy.1
 create mode 100644 debian/help2man/convert_coords.1
 create mode 100644 debian/help2man/display_rate_matrix.1
 create mode 100644 debian/help2man/dless.1
 create mode 100644 debian/help2man/dlessP.1
 create mode 100644 debian/help2man/draw_tree.1
 create mode 100644 debian/help2man/eval_predictions.1
 create mode 100644 debian/help2man/exoniphy.1
 create mode 100644 debian/help2man/hmm_train.1
 create mode 100644 debian/help2man/hmm_tweak.1
 create mode 100644 debian/help2man/hmm_view.1
 create mode 100644 debian/help2man/indelFit.1
 create mode 100644 debian/help2man/indelHistory.1
 create mode 100644 debian/help2man/maf_parse.1
 create mode 100644 debian/help2man/makeHKY.1
 create mode 100644 debian/help2man/modFreqs.1
 create mode 100644 debian/help2man/msa_diff.1
 create mode 100644 debian/help2man/msa_split.1
 create mode 100644 debian/help2man/msa_view.1
 create mode 100644 debian/help2man/pbsDecode.1
 create mode 100644 debian/help2man/pbsEncode.1
 create mode 100644 debian/help2man/pbsScoreMatrix.1
 create mode 100644 debian/help2man/pbsTrain.1
 create mode 100644 debian/help2man/phast.1
 create mode 100644 debian/help2man/phastBias.1
 create mode 100644 debian/help2man/phastCons.1
 create mode 100644 debian/help2man/phastMotif.1
 create mode 100644 debian/help2man/phastOdds.1
 create mode 100644 debian/help2man/phyloBoot.1
 create mode 100644 debian/help2man/phyloFit.1
 create mode 100644 debian/help2man/phyloP.1
 create mode 100644 debian/help2man/prequel.1
 create mode 100644 debian/help2man/refeature.1
 create mode 100644 debian/help2man/stringiphy.1
 create mode 100644 debian/help2man/treeGen.1
 create mode 100644 debian/help2man/tree_doctor.1
 create mode 100644 debian/manpages

-- 
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