[med-svn] [prank] branch master updated (0cd2864 -> 44e82ae)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository prank.

      from  0cd2864   Fix variable name
       new  7c9252b   Upload to experimental
       new  870b95e   Exclude .git repository from upstream source
       new  0acd6a3   New upstream version 0.0.170427+dfsg
       new  90d2189   Updated version 0.0.170427+dfsg from 'upstream/0.0.170427+dfsg'
       new  6e45a10   new upstream version
       new  6855d94   debhelper 10
       new  173ad2c   Standards-Version: 4.1.0 (no changes needed)
       new  44e82ae   Upload to unstable

The 8 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 VERSION_HISTORY         |  7 ++++++
 debian/changelog        | 11 +++++++++-
 debian/compat           |  2 +-
 debian/control          |  4 ++--
 debian/copyright        |  1 +
 debian/rules            |  2 +-
 debian/watch            |  2 +-
 src/bppancestors.cpp    | 57 ++++++++++++------------------------------------
 src/bppancestors.h      | 15 -------------
 src/config.h            |  6 +++++
 src/exonerate_reads.cpp | 40 +++++++++++-----------------------
 src/exonerate_reads.h   | 14 ------------
 src/hirschberg.cpp      |  4 ++--
 src/hmmodel.cpp         |  3 ++-
 src/mafft_alignment.cpp | 32 +++++++++------------------
 src/mafft_alignment.h   | 13 -----------
 src/prank.1             | 41 ++++++++++++++++++++--------------
 src/prank.cpp           | 58 ++++++++++++++++++++++++++++++++++++++++++++++++-
 src/readalignment.cpp   |  4 ++--
 19 files changed, 154 insertions(+), 162 deletions(-)

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