[med-svn] [prank] branch upstream updated (19f9dff -> 0acd6a3)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository prank.

      from  19f9dff   New upstream version 0.0.150803
       new  0acd6a3   New upstream version 0.0.170427+dfsg

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 VERSION_HISTORY         |  7 ++++++
 src/bppancestors.cpp    | 57 ++++++++++++------------------------------------
 src/bppancestors.h      | 15 -------------
 src/config.h            |  6 +++++
 src/exonerate_reads.cpp | 40 +++++++++++-----------------------
 src/exonerate_reads.h   | 14 ------------
 src/hirschberg.cpp      |  4 ++--
 src/hmmodel.cpp         |  3 ++-
 src/mafft_alignment.cpp | 32 +++++++++------------------
 src/mafft_alignment.h   | 13 -----------
 src/prank.1             | 41 ++++++++++++++++++++--------------
 src/prank.cpp           | 58 ++++++++++++++++++++++++++++++++++++++++++++++++-
 src/readalignment.cpp   |  4 ++--
 13 files changed, 138 insertions(+), 156 deletions(-)

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