[med-svn] [mafft] branch master created (now aa23abc)
Andreas Tille
tille at debian.org
Tue Sep 12 12:34:22 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository mafft.
at aa23abc Move packaging from SVN to Git
This branch includes the following new commits:
new f319e7d [svn-inject] Installing original source of mafft
new c44eca5 [svn-inject] Forking mafft source to Trunk
new cd0ebcc Load newtrunk into trunk/packages/mafft/trunk.
new d270661 [svn-inject] Setting properties of mafft/debian/
new a16b3cf fix build, add test rule
new 3facdbf Declaring VCS in debian/control
new 3d7c4d7 Worked two hours writing a manpage and erased it by mistake before commiting. Never again.
new 3484205 New upstream release, manpage, changing recommends into suggests.
new 7ccda02 One more manpage, fixing lintian errors, adding a suggested package.
new bc8f753 do not ignore errors from make clean
new 89ffcca Moving Homepage: field out from the package description.
new ee49f29 * debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically. * debian/control: - B-D updated (see above) - added myself to Uploaders - moved XS-Vcs-* fields to Vcs-* * debian/rules: - reflecting static build of manpages - minor changes
new bc45915 +XS-DM-Upload-Allowed: Yes
new fd4a391 I am a bit uncertain at the moment what all my changes exactly were about, mostly typos or other bits that annoyed me in the original package description of packages that I translated to German.
new 5c18238 Fixing case mistake
new d6c9ad6 * Using DM-Upload-Allowed instead of XS-DM-Upload-Allowed * Added ?rev=0&sc=0 to Vcs-Browser fields * Sanitized Vcs-* fields
new 359a386 Updating Standards-Version to 3.7.3
new 1536c4c Enhances: t-coffee
new 0ad099c Updated my email address.
new 0abc078 Patched mafft-homolog to use mktemp for increased security.
new 019aef7 Reviewed and forwarded.
new 3d44ff5 Corrected paste error.
new a9de290 Patch reviewed and amended by Upstream.
new 46354a4 Reviewd and accepted.
new c21ca0a Removing from Uploaders :)
new ba21256 Forgot to changelog, sorry
new f9d21d0 * debian/patches/: - fix-undefined-sprintf-usage.patch added
new 3aa5b1b The patch was forwarded by David. Thank you very much !
new e3c52a0 Formal upgrade of packaging stuff to latest upstream; patches most probably have to be adapted and modifications need to be verified
new f5c68b3 Removed patch which was applied upstream
new ccbc983 Removed patch applied upstream, no need for quilt any more
new a81cba7 Use versionmangle to differentiate upstreams with*-extensions; let package compile cleanly - further verification whether everything is in place is needed, lintian warnings have to be handled
new b707b78 Manpages are now included upstream, slightly changed debhelper inputs to keep debian/rules cleaner
new 26c8c68 Bring back quilt: The upstream Makefile handles manpages as binaries ... ugh
new 09fbe1f Machine readable copyright
new b8c228c Make sure manpages are not executable
new 183eae7 Strip unneded code from rules file; prevent copies of man pages at wrong place; Recommends: ruby - a ruby script is places in /usr/bin so in principle we should even depend from ruby, alternatively we might "hide" the script if it is of minor use in /usr/lib/mafft.
new d0b86d4 The ruby script in /usr/bin needs blast2 and lynx.
new 69b57af Upload to unstable
new 47ff286 New upstream version
new dd4f124 Added a few informations about Upstream in debian/upstream-metadata.yaml.
new aa72e00 New usptream version, and various minor packaging changes.
new 6dba4df New upstream version
new ed717ed Switch to source format 3.0 (quilt)
new 99496bc New upstream version
new 84efb0d New upstream version
new 4ecbb93 New upstream version and the needed changes, debhelper 8, switched to dh
new 576f83a Remove extra manpage copies instead of patching Makefile and installing via debhleper.
new 1c08f7d Removed debian/dirs, not needed anymore.
new 0388d0d New upstream version and adjustemnts to changes in core/Makefile.
new 68d3b35 Run the tests after installation, and allow them to fail.
new a87f185 Build when running debian/rules build (override typo); correct again for FHS.
new ac847a7 Re-de-disable multithreading.
new a6d25a2 Corrected VCS URLs, checked Policy conformance, and uploaded.
new 0966c67 New upstream release (no new license statement nor copyright holder).
new 3910d53 Converted debian/copyright to machine-readable (DEP 5) format.
new 418d187 Uploaded.
new 90fb19d Simplified debian/watch.
new 1571592 Compress binary package with xz.
new 48f52dd New upstream homepage.
new bcd5ab7 Uploaded new upstream release (no new copyright notice nor license).
new 26b5fe7 Track new web site.
new 8f9988c Updated Homepage and Watch.
new 9ecc910 Renamed README.Debian README.test, as it was all about tests.
new aa27d6d Pre-Depends: dpkg (>= 1.15.6) for xz compression support.
new 7a1bf64 Corrected cut-and-pasta.
new 1d70274 Uploaded new upstream release. No new license nor copyright.
new efeb9a0 Renamed debian/upstream-metadata.yaml to debian/upstream.
new fa26086 debian/upstream: Moved DOI and PMID to the Reference namespace.
new 4808a3b Single Reference field instead of Reference-*
new e75d3bb Add forgotten ':'
new 0e079f6 Add additional reference from tasks file
new 7c30d92 Authors in BibTeX conform format
new a6badf6 Normalised Debian copyright file with the command cme fix dpkg-copyright.
new 7740c7d Removed 'Pre-Depends: dpkg (>= 1.15.6)' now that Ubuntu LTS 12.04 is out.
new 1dce441 Conforms with Policy 3.9.4.
new b62f5b6 Normalised Debian source package control file with cme fix dpkg-control.
new 20d902d Removed DM-Upload-Allowed field.
new f05d29e New upstream release (no new license nor copyright statement).
new d73779e Removed unnecessary build-dependance on quilt.
new 3313817 Test for regressions with autopkgtest insted of doing it at build time.
new 66ce7d7 Added missing changelog entries.
new 1e11761 Finished the removal of quilt dependance.
new d4662fd Use Debhelper 9.
new 697f84a Pass dpkg build flags in debian/rules. and uploaded.
new ddc7bb8 Signal the use of autopkgtest.
new 0e3ef68 New upstream version, removed redundant REAMDE.source
new 9f9ef02 hardening patch; anonscm
new 5b1cf60 Upload to unstable
new 4f3c216 Upload new upstream version that incorporated our hardening patches and fixed Mayhem bugs
new e656cd8 Correct watch file, which was downloading the non-free version.
new 3271898 New upstream release, no new copyright nor license notice.
new e5e991d Stopped claiming a copyright for my trivial contributions.
new 8dbaac1 Correct Watch field.
new 79eff02 Correct contact email address.
new 616ce9a Wait before uploading: on regression test is failing.
new 1f0c08e Disable multithreading to stabilise output.
new d2d4cda mafft (7.123-1) unstable; urgency=low
new bd30954 debian/tests/with-example-data: Don't write progress to stderr on success.
new c23becf Run mafft quietly instead.
new 22107a7 Remove XZ option now that it is the default.
new 661ef60 Conforms with Policy 3.9.5.
new 2dc5e8f Pass CPPFLAGS within CFLAGS.
new 8bc353c mafft (7.127-1) unstable; urgency=low
new d0463f2 mafft (7.130-1) unstable; urgency=low
new 2a54618 Move debian/upstream to debian/upstream/metadata
new d2d757c mafft (7.147-1) unstable; urgency=medium
new 9903748 mafft (7.149-1) unstable; urgency=medium
new 1b43c20 Added substitution variable ${perl:Depends}, used by Debhelper.
new 653ec5d Recommend libwww-perl used by the script ‘seekquencer_premafft.pl’.
new d5c7023 New upstream releases.
new 88818fa New upstream version
new 35c7905 mafft (7.187-1) unstable; urgency=medium
new 7630f60 New upstream version
new a3dcc0c The latest version of MAFFT leaves an empty file in the bin directory. Presumably at some point this will actually contain code, so I've added a rule to remove the file but only if it is actually empty. In the next version if the file is non-empty you'll get an error. Also I think it is worth having mafft-profile in /usr/bin. QIIME expects it in the path. Other than that, a basic version bump.
new 189983d Upload to experimental
new b20051e New upstream version
new 9992a4e New upstream version
new 588826d New upstream version
new ca5259e Fix bashism
new ec2836f Upload to unstable
new 0741436 New upstream version
new 0dcd9fe New upstream version
new 4b42aef * New upstream version * cme fix dpkg-control * /usr/bin/mafft-sparsecore.rb is non-zero - remove the test in debian/rules * Better hardening
new d69eb5e New upstream version
new 911ac8b * New upstream version * debhelper 10 * update d/copyright * d/watch: version=4
new ebab171 New upstream version 7.307
new 75a4e4d Updated version 7.307 from 'upstream/7.307'
new aa23abc Move packaging from SVN to Git
The 129 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
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