[med-svn] [staden-io-lib] 03/03: Updated version 1.14.9 from 'upstream/1.14.9'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository staden-io-lib.

commit 258c8bd41bfb341cf74c22e33687b568063bba46
Merge: e26aec0 445eda3
Author: Andreas Tille <tille at debian.org>
Date:   Tue Sep 12 15:37:13 2017 +0200

    Updated version 1.14.9 from 'upstream/1.14.9'
    
    with Debian dir 510e5b56bd7b680b75366f710bf943cfd8edf539

 CHANGES                         |    72 +
 ChangeLog                       | 11048 --------------------------------------
 Makefile.am                     |     5 +-
 Makefile.in                     |   432 +-
 README => README.md             |    97 +-
 aclocal.m4                      |   758 +--
 bootstrap                       |     2 +-
 config.guess                    |   184 +-
 config.sub                      |   106 +-
 configure                       |   661 +--
 configure.in                    |    11 +-
 depcomp                         |   487 +-
 install-sh                      |    14 +-
 io_lib/Makefile.am              |     4 +-
 io_lib/Makefile.in              |   667 +--
 io_lib/bam.c                    |   178 +-
 io_lib/bam.h                    |    18 +-
 io_lib/bgzip.c                  |   466 ++
 io_lib/bgzip.h                  |    58 +
 io_lib/cram_codecs.c            |   109 +
 io_lib/cram_codecs.h            |    13 +
 io_lib/cram_decode.c            |   112 +-
 io_lib/cram_encode.c            |    26 +-
 io_lib/cram_io.c                |    97 +-
 io_lib/cram_io.h                |     4 +-
 io_lib/cram_stats.c             |     9 +-
 io_lib/cram_structs.h           |    13 +-
 io_lib/crc32.c                  |     2 +
 io_lib/dstring.c                |    19 +-
 io_lib/hash_table.h             |     1 +
 io_lib/rANS_static.c            |   413 +-
 io_lib/sam_header.c             |    70 +-
 io_lib/sam_header.h             |     4 +
 io_lib/scram.c                  |    37 +
 io_lib/scram.h                  |    16 +
 io_lib/srf.c                    |    22 +-
 io_lib/zfio.c                   |    41 +-
 io_lib_config.h                 |    21 +-
 io_lib_config.h.in              |    11 +-
 ltmain.sh                       |     4 +-
 man/man1/scramble.1             |     5 +
 missing                         |   414 +-
 progs/Makefile.am               |     5 +-
 progs/Makefile.in               |   411 +-
 progs/cram_filter.c             |   919 ++++
 progs/scram_flagstat.c          |     7 +-
 progs/scramble.c                |    65 +-
 test-driver                     |   139 -
 tests/Makefile.am               |     8 +
 tests/Makefile.in               |   679 +--
 tests/data/aux#aux.dz           |   Bin 95 -> 0 bytes
 tests/data/tr                   |  7453 -------------------------
 tests/data/xx#large_aux.cram    |   Bin 22668 -> 0 bytes
 tests/data/xx#supplementary.sam |    10 -
 54 files changed, 4420 insertions(+), 22007 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/staden-io-lib.git