[med-svn] [arb] annotated tag debian/6.0.6-1 created (now 75af0a1)
Fabian Klötzl
kloetzl-guest at moszumanska.debian.org
Tue Sep 12 15:43:05 UTC 2017
This is an automated email from the git hooks/post-receive script.
kloetzl-guest pushed a change to annotated tag debian/6.0.6-1
in repository arb.
at 75af0a1 (tag)
tagging 92272671147c4d93e2d8bc4c3e1a25f22e1f9582 (commit)
tagged by Fabian Klötzl
on Tue Sep 12 16:26:49 2017 +0200
- Log -----------------------------------------------------------------
debian/6.0.6-1
Andreas Tille (114):
Added arb
Several changes that finally build base for a prerelease.
Added vcs tag
New upstream version
Tagged 0.0.20071207-1
Moved from dpathc to quilt because of some problems with new release and dpatch
XS-Autobuild: yes to enable auto building
Enhanced description
Fixes #489330, but reviealed a lot of gcc-4.3 issues - I'm working on these ...
Some gcc-4.3 patches, more will be needed.
More gcc-4.3 patches, not finished yet
Further gcc-4.3 issues, not finished yet
Further include patches. Hit a larger problem with name clash and need to ask for some hehelp of more skilled C++ person ...
After having sended incomplete gcc-4.3 patchset to upstream I've got back a complete patch to work with gcc-4.3. Just took over the original file name.
Machine readable copyright file
Fix some lintian warnings
Remove all files on purge - piuparts detected remaining files in /var/lib
More detailed copyright statements to enable nonfree at release.debian.net to put arb on their list.
More work on copyright statements
Make use of dh_lintian and add lintian override that arb-doc is actually in the right section.
Strip rpath from ARB.so using chrpath (fixes last remaining lintian problem)
Better short description which was to generic after [Biology] was removed
Fix tempfile issue and location of arb name server issue.
Make sure config script works when using NIS
Patches for CVE-2008-5378
Fix in Debian own code CVE-2008-5378
Enhanced patch for CVE-2008-5378
Avoid rxp dependency
Use xmllint instead of rxp
Security issues should be solved now
Russian debconf translation and -Wl,--as-needed to avoid dpkg-shlibdeps warnings
Revert the latest change in Makefile because it prevents package from beeing built - live with the warnings as before.
Mention CVE-2008-5378 explicitely in changelog
Fix description and translation related bugs
Fixed some lintian problems
s/dh_clean -k/dh_clean; dh_prep/ as requested by linitan for using debhelper version 7
Move package arb-doc to section non-free/doc
Commit latest changes (perhaps this might become unneeded now since arb released a new version which provides 64 bit support)
arb now covers version number in download directory. Thanks for the watchfile to David Paleino
New upstream version, bumped standards-version
This file became superflous with the new upstream version
Enable compilation on 32 and 64 bit machines
Updated patches to new version
This version of arb works with gcc 4.3 natively so we can drop our patches
Upstream is now using xmllint instead of rxp
Overworked old patches to make sure all apply correctly
Build-Depends: xutils-dev, Enable building with gcc 4.3.4
Adjusted patches to sucessfully compile upstream code
Recommends bioperl; cleanup regarding several changes in new upstream version
CLeanup some leftovers, deal with lintian problems, updated docs
Lintian clean
Some patches to enable compilation using gcc-4.4.3 (does not finally build but I'm working on this)
More gcc-4.4.3 patches
New upstream version does now compile using latest gcc, debconf translations, source format 3.0
Make sure scripts will be installed correctly
Start working on new upstream release of arb, however, it does not build
Added debconf translations for three languages, updated debconf translations
Remove xclient dependency
Really regard DEB_BUILD_ARCH_BITS (patch was wrong); Fix errors in clean targets of upstream Makefiles; use override_dh_* in debian/rules
Get some valid packages at least, needs to verify content and whether program is really working
Really remove xview-client dependency.
Several adpatations to new upstrem version; needs further testing
More DEP5 fixes. Package builds but arb-doc package broken - needs checking how the docs are builded in new version.
Some minor changes in clean target and permission changes; upload to unstable
Some molphy related remarks remained in previous upload and are removed now in SVN
Remove explicite dependencies of printing libraries, ad catalan debconf template, upload to unstable
Make sure arb can be properly purged; make sure will be able to "dh build-arch" which seems to be default sbuild behaviour.
Citation of the day
Mass changes to fix all open bugs and hopefully finally also build properly with gcc-4.7
Enable hardening
Upload to unstable
New upstream version + adapted patches
Slovak debconf translation
Fix remaining part of the patch for armhf to fix #692499
Upload to unstable (arb is not in testing)
Mention Tim's change in changelog (thanks to Tim)
DEP3 descriptions for patches
After Tim's change to ensure arb_edit4 will be created a missing linked library became critical
Some polishing of d/control; enable build with higher versions of gcc
Fix build issue that was caused by some brocken $(CFLAGS)
Some issues that occured when building with gcc-4.8 (more to come)
Avoid trouble with third party raxml by using Debian packaged one
use xz compression; upload to unstable
Restrict arb to architectures amd64 i386 kfreebsd-i386 kfreebsd-amd64
Due to upstream openjdk Build-Depends can be removed; upload to unstable
Commit currently uncommited changes for 5.5-4 upload
build-depend on libtiff-dev instead of libtiff4-dev
cme fix dpkg-control
cme fix dpkg-copyright
Canonical Vcs URLs; do not build-depend from dpkg-dev
Upload with not all hardening cases solved, but at least some of them for the moment ...
TODO: Run test suite
Adapt d/watch to new upstream version
Adapted patches to new upstream version (does not build yet!)
fix hardeining patch
Switch of GL for the moment since it generates build errors. Hopefully this patch can be deactivated by fixing the GL build problems; consistent naming of patches
Exclude fasttree, mafft, mrbayes, muscle, phyml and probcons from building in GDE and rather use the according Debian packages by adding these to the list of dependencies
Add Elmar Pruesse <epruesse at mpi-bremen.de> as Uploader
Remove some cruft
Add explicite --remove-section=.comment option to manual strip call
cme fix dpkg-control
Separated changelog entries between the editors of the changes
Closes #741890
Do not create unneeded lintian dir
Add turkish debconf translation
DEP3 headers for patches
Upload to unstable
Please add new changelog entries after a package was released. You can use `dch -i` to do so.
Skip compiler version check at all
Upload to unstable
Applied all l10n patches - thanks a lot for the great l10n team for pushing this
New upstream version with adapted patches, extra linker flag proposed by Tim Booth
Several lintian issues and upload to unstable
* New upstream version
Charles Plessy (3):
+XS-DM-Upload-Allowed: Yes
Fixing case mistake
Update to the latest doc-base policy.
David Paleino (6):
* debian/control:
setting UNRELEASED
- removing XS- from DM-Upload-Allowed
* Using DM-Upload-Allowed instead of XS-DM-Upload-Allowed
Set svn:mergeWithUpstream
Removed myself from Uploaders
Elmar Pruesse (39):
remove build target "arbxtras" (no longer exists upstream)
fix patch 72 just re-added "-lm" removed in patch 50
fix build problems
remove outdated comment
update wrapper script for arb 6.0
update default config to the variables understood by ARB 6
users adding PT server should not be necessary any longer in ARB 6
remove script that would create arb_tcp.dat from several partial files
wrote a new manfile for arb
fix spelling error
Reworked package for ARB 6.0
remove files that aren't needed for package in install target
remove manpage entry for removed script
use upstream's arb_tcp.dat
backport "show progress while opening database" patch from upstream
put arb file icon into the right directory
fix perms for arb_launcher socket (security issue)
fix patch (upstream r12795)
remove old pt servers when upgrading from 5.5
remove set -x
update changelog
fix email (permanent rather than employer)
update short package descriptions (fixes lintian duplicate-short-description)
fix hyphens in man pages
linitian override for ARB.so rpath no longer necessary
fix duplicate-short-description for libarb
KeyWords -> Keywords
add patches to fix lintian warnings
add documentation for r17921
fix addlibs path
- add upstream keyword and URL to patches cherry picked from upstream
comment previous checkin in changelog
use the phyml packaged in debian for all interfaces in ARB
forgot to quilt refresh...
remove question from template
add override for phyml config.guess (not used in build)
reworded template to not use imperative and ran debconf-updatepo
add Portugese and Russian debconf translations (closes: #761616 and #761503)
fix broken debian/changelog
Fabian Klötzl (3):
Initial upstream branch
Imported Upstream version 6.0.6
Merge tag 'upstream/6.0.6'
James McCoy (1):
Move debian/upstream to debian/upstream/metadata
Nelson A. de Oliveira (2):
In arb_CHANGES.txt we have:
We need only the ssh client (that is provided by openssh-client) and not a full
Sascha Steinbiss (6):
fix building with GCC 6
use secure Vcs-Browser
do not depend on perl-modules
add patch header
bump Standards-Version
fix typo
Thorsten Alteholz (1):
set mergeWithUpstream 1 for svn-buildpackage
Tim Booth (1):
I found an issue building for Ubuntu where the arb_edit4 binary failed to link and was therefore missing from
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