[med-svn] [gmap] branch upstream updated (67575fa -> 4495e01)

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a change to branch upstream
in repository gmap.

      from  67575fa   New upstream version 2017-08-15
      adds  cc72685   New upstream version 2017-09-05
       new  4495e01   New upstream version 2017-09-11

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ChangeLog           |  35 ++++++
 Makefile.in         |   2 +-
 TODO                |   3 -
 VERSION             |   2 +-
 configure           |  24 ++--
 src/ChangeLog       |   0
 src/Makefile.in     |   2 +-
 src/compile         | 165 ----------------------------
 src/get-genome.c    |  88 ++++++++++++++-
 src/gmap.c          |  26 ++---
 src/gmapindex.c     |  32 +++---
 src/pair.c          | 120 ++++++++++++++++----
 src/sarray-search.c | 307 +++++++++++++++++++++++++++-------------------------
 src/stage1hr.c      |   6 +-
 14 files changed, 424 insertions(+), 388 deletions(-)
 delete mode 100644 TODO
 delete mode 100644 src/ChangeLog
 delete mode 100644 src/compile

-- 
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