[med-svn] [fast5] 02/03: Updated version 0.6.2 from 'upstream/0.6.2'
Steffen Möller
moeller at moszumanska.debian.org
Fri Sep 15 12:18:31 UTC 2017
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moeller pushed a commit to branch master
in repository fast5.
commit 0276783d87d3604f16d4da5f6634e6f4133311e7
Merge: c66dbbd 1a33a45
Author: Steffen Moeller <moeller at debian.org>
Date: Fri Sep 15 13:45:51 2017 +0200
Updated version 0.6.2 from 'upstream/0.6.2'
with Debian dir 62dcca775a6723e6136d38caace9e6ecd5f64209
.travis.Dockerfile.in | 17 +-
.travis.yml | 2 +-
.version_files | 2 +-
README.org | 91 +-
VERSION | 2 +-
python/.gitignore | 1 +
python/Makefile | 20 +-
python/bin/f5ls | 249 ++++
python/bin/f5pack | 240 ++++
python/fast5/.version.py.in | 1 -
python/fast5/__init__.py | 10 -
python/fast5/fast5.pyx | 523 +++++++
python/fast5/source/fast5.cpp | 182 ---
python/fast5/version.py | 1 -
python/setup.py | 86 +-
src/.fast5_version.hpp.in | 16 +
src/.gitignore | 1 +
src/Bit_Packer.hpp | 152 ++
src/File_Packer.hpp | 982 +++++++++++++
src/Huffman_Packer.hpp | 357 +++++
src/Makefile | 42 +-
src/cwmap.fast5_ed_len_1.inl | 103 ++
src/cwmap.fast5_ed_skip_1.inl | 4 +
src/cwmap.fast5_ev_move_1.inl | 6 +
src/cwmap.fast5_ev_rel_skip_1.inl | 4 +
src/cwmap.fast5_fq_bp_1.inl | 7 +
src/cwmap.fast5_fq_qv_1.inl | 35 +
src/cwmap.fast5_rw_1.inl | 204 +++
src/f5-mod.cpp | 14 +-
src/f5dump.cpp | 96 +-
src/f5ls-full.cpp | 35 +-
src/f5ls.cpp | 17 +-
src/f5pack.cpp | 185 +++
src/fast5.hpp | 2788 ++++++++++++++++++++++++++++---------
src/fast5_version.hpp | 16 +
src/hdf5-mod.cpp | 12 +
src/hdf5_tools.hpp | 316 ++++-
src/huffman-decode.cpp | 55 +
src/huffman-encode.cpp | 44 +
src/hufftk | 171 +++
src/logger.hpp | 378 +++++
src/tmp.cpp | 7 +
42 files changed, 6340 insertions(+), 1134 deletions(-)
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