[med-svn] [abyss] 01/20: Quick shot at abacas packaging. Packaging technical it seems to be a very easy target. It's used in our institute. Anybody willing to complete this task?

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to annotated tag upstream/1.3.1
in repository abyss.

commit 9839dc92bfd0c0ecbeb61272ccc1e42655cbee57
Author: Andreas Tille <tille at debian.org>
Date:   Fri Feb 11 13:54:51 2011 +0000

    Quick shot at abacas packaging.  Packaging technical it seems to be a very easy target.  It's used in our institute.  Anybody willing to complete this task?
---
 debian/changelog     |  6 ++++++
 debian/compat        |  1 +
 debian/control       | 29 +++++++++++++++++++++++++++++
 debian/copyright     | 29 +++++++++++++++++++++++++++++
 debian/source/format |  1 +
 debian/watch         |  2 ++
 6 files changed, 68 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..f25d0f6
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,6 @@
+abacas (1.3.1-1) unstable; urgency=low
+
+  * Initial release (Closes: #????)
+  PACKAGING NOT FINISHED - FEEL FREE TO TAKE OVER
+
+ -- Andreas Tille <tille at debian.org>  Mon, 11 Feb 2011 12:02:43 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..7f8f011
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+7
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..5fea68e
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,29 @@
+Source: abacas
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 7.1)
+Standards-Version: 3.9.1
+Homepage: http://abacas.sourceforge.net/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/abacas/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/abacas/trunk/
+
+Package: abacas
+Architecture: all
+Depends: ${perl:Depends}, ${misc:Depends}, mummer
+Description: Algorithm Based Automatic Contiguation of Assembled Sequences
+ ABACAS is intended to rapidly contiguate (align, order, orientate),
+ visualize and design primers to close gaps on shotgun assembled contigs
+ based on a reference sequence.
+ .
+ ABACAS uses MUMmer to find alignment positions and identify syntenies
+ of assembled contigs against the reference. The output is then processed
+ to generate a pseudomolecule taking overlapping contigs and gaps in to
+ account. ABACAS generates a comparision file that can be used to
+ visualize ordered and oriented contigs in ACT. Synteny is represented by
+ red bars where colour intensity decreases with lower values of percent
+ identity between comparable blocks. Information on contigs such as the
+ orientation, percent identity, coverage and overlap with other contigs
+ can also be visualized by loading the outputted feature file on ACT.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..e0bff72
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,29 @@
+Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
+
+Name    :  Abacas
+Contact :  
+Source  :  http://sourceforge.net/projects/abacas/files/
+
+Copyright: © 2008-10 Genome Research Limited. All Rights Reserved.
+License: GPL-2+
+	
+	Abacas is free software; you can redistribute it and/or modify
+	it under the terms of the GNU General Public License as published by
+	the Free Software Foundation; either version 2 of the License, or
+	(at your option) any later version.
+	
+	Velvet is distributed in the hope that it will be useful,
+	but WITHOUT ANY WARRANTY; without even the implied warranty of
+	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+	GNU General Public License for more details.
+	
+	You should have received a copy of the GNU General Public License
+	along with Velvet; if not, write to the Free Software
+	Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+
+On Debian systems, the complete text of the GNU General Public
+License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
+
+Files: debian/*
+Copyright: © 2011 Andreas Tille <tille at debian.org>
+License: Same as abacas
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..ec13f28
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=3
+http://sf.net/abacas/abacas\.([\d\.]+)\.pl

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/abyss.git