[med-svn] [velvetoptimiser] branch master updated (d48c7d5 -> 9ce3c7b)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository velvetoptimiser.

      from  d48c7d5   Moved packaging from SVN to Git
       new  b409eb9   New upstream version 2.2.6
       new  8ff6b3a   Updated version 2.2.6 from 'upstream/2.2.6'
       new  cde0aa6   New upstream version, delete patches that are not applied anyway
       new  4ba5c04   Standards-Version: 4.1.0 (no changes needed)
       new  9ce3c7b   Fix spelling, upload to unstable

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CHANGELOG                     |   8 +
 README                        | 311 ---------------------------------
 README.md                     | 396 ++++++++++++++++++++++++++++++++++++++++++
 VelvetOpt/Assembly.pm         |   6 +-
 VelvetOpt/Utils.pm            |  32 +++-
 VelvetOpt/gwrap.pm            |   9 +-
 VelvetOpt/hwrap.pm            |   7 +-
 VelvetOptimiser.pl            | 146 ++++++++--------
 debian/changelog              |   6 +-
 debian/control                |   2 +-
 debian/patches/no_findbin     |  13 --
 debian/patches/series         |   0
 debian/velvetoptimiser.1      |   2 +-
 maketar.sh                    |  40 +++++
 paper.bib                     | 258 +++++++++++++++++++++++++++
 paper.md                      |  22 +++
 test/data/test_long_R1.fq.gz  | Bin 0 -> 1258403 bytes
 test/data/test_long_R2.fq.gz  | Bin 0 -> 1296399 bytes
 test/data/test_short_R1.fq.gz | Bin 0 -> 1547180 bytes
 test/data/test_short_R2.fq.gz | Bin 0 -> 1744996 bytes
 test/run_test.sh              |  21 +++
 21 files changed, 863 insertions(+), 416 deletions(-)
 delete mode 100644 README
 create mode 100644 README.md
 delete mode 100644 debian/patches/no_findbin
 delete mode 100644 debian/patches/series
 create mode 100755 maketar.sh
 create mode 100644 paper.bib
 create mode 100644 paper.md
 create mode 100644 test/data/test_long_R1.fq.gz
 create mode 100644 test/data/test_long_R2.fq.gz
 create mode 100644 test/data/test_short_R1.fq.gz
 create mode 100644 test/data/test_short_R2.fq.gz
 create mode 100755 test/run_test.sh

-- 
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