[med-svn] [velvetoptimiser] branch upstream updated (d3f2c86 -> b409eb9)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository velvetoptimiser.

      from  d3f2c86   New upstream version 2.2.5
       new  b409eb9   New upstream version 2.2.6

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CHANGELOG                     |   8 +
 README                        | 311 ---------------------------------
 README.md                     | 396 ++++++++++++++++++++++++++++++++++++++++++
 VelvetOpt/Assembly.pm         |   6 +-
 VelvetOpt/Utils.pm            |  32 +++-
 VelvetOpt/gwrap.pm            |   9 +-
 VelvetOpt/hwrap.pm            |   7 +-
 VelvetOptimiser.pl            | 146 ++++++++--------
 maketar.sh                    |  40 +++++
 paper.bib                     | 258 +++++++++++++++++++++++++++
 paper.md                      |  22 +++
 test/data/test_long_R1.fq.gz  | Bin 0 -> 1258403 bytes
 test/data/test_long_R2.fq.gz  | Bin 0 -> 1296399 bytes
 test/data/test_short_R1.fq.gz | Bin 0 -> 1547180 bytes
 test/data/test_short_R2.fq.gz | Bin 0 -> 1744996 bytes
 test/run_test.sh              |  21 +++
 16 files changed, 857 insertions(+), 399 deletions(-)
 delete mode 100644 README
 create mode 100644 README.md
 create mode 100755 maketar.sh
 create mode 100644 paper.bib
 create mode 100644 paper.md
 create mode 100644 test/data/test_long_R1.fq.gz
 create mode 100644 test/data/test_long_R2.fq.gz
 create mode 100644 test/data/test_short_R1.fq.gz
 create mode 100644 test/data/test_short_R2.fq.gz
 create mode 100755 test/run_test.sh

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