[med-svn] [r-bioc-annotationhub] 10/11: Updated version 2.8.1 from 'upstream/2.8.1'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-annotationhub.

commit d7669ee2a33bd418a7f38448dcbe6abb992bf821
Merge: 53cc945 043bbce
Author: Andreas Tille <tille at debian.org>
Date:   Fri Sep 22 13:33:22 2017 +0200

    Updated version 2.8.1 from 'upstream/2.8.1'
    
    with Debian dir 64bc68403e5cf2890c3ecff854c37d8de3b4850a

 DESCRIPTION                               |  43 ++
 NAMESPACE                                 |  87 ++++
 NEWS                                      | 198 ++++++++
 R/AllGenerics.R                           |  56 +++
 R/AnnotationHub-class.R                   | 121 +++++
 R/AnnotationHubOption.R                   |  52 +++
 R/AnnotationHubResource-class.R           | 275 ++++++++++++
 R/BEDResource-class.R                     |  57 +++
 R/EnsDbResource-class.R                   |  13 +
 R/EpigenomeResource-class.R               | 144 ++++++
 R/Hub-class.R                             | 466 +++++++++++++++++++
 R/Hub-utils.R                             | 134 ++++++
 R/ProteomicsResource-class.R              |  34 ++
 R/cache-utils.R                           | 114 +++++
 R/db-utils.R                              | 174 +++++++
 R/sql-utils.R                             | 361 +++++++++++++++
 R/utilities.R                             | 159 +++++++
 R/zzz.R                                   |  31 ++
 build/vignette.rds                        | Bin 0 -> 287 bytes
 inst/doc/AnnotationHub-HOWTO.R            | 158 +++++++
 inst/doc/AnnotationHub-HOWTO.Rmd          | 367 +++++++++++++++
 inst/doc/AnnotationHub-HOWTO.html         | 724 ++++++++++++++++++++++++++++++
 inst/doc/AnnotationHub.R                  |  71 +++
 inst/doc/AnnotationHub.Rmd                | 235 ++++++++++
 inst/doc/AnnotationHub.html               | 391 ++++++++++++++++
 inst/scripts/shinyTest.R                  | 180 ++++++++
 inst/scripts/test.R                       | 244 ++++++++++
 inst/unitTests/test_AnnotationHub-class.R |  31 ++
 inst/unitTests/test_cache.R               |  17 +
 inst/unitTests/test_tidyGRanges.R         |  32 ++
 inst/unitTests/test_utilities.R           |   3 +
 man/AnnotationHub-class.Rd                | 402 +++++++++++++++++
 man/AnnotationHub-package.Rd              |  14 +
 man/AnnotationHubResource-class.Rd        |  52 +++
 man/getAnnotationHubOption.Rd             |  72 +++
 man/listResources.Rd                      |  71 +++
 tests/runTests.R                          |   1 +
 vignettes/AnnotationHub-HOWTO.Rmd         | 367 +++++++++++++++
 vignettes/AnnotationHub.Rmd               | 235 ++++++++++
 vignettes/display.png                     | Bin 0 -> 170334 bytes
 40 files changed, 6186 insertions(+)

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