[med-svn] [r-bioc-gviz] branch master updated (9b398ab -> 43ea7bb)

[Andreas Tille]

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tille pushed a change to branch master
in repository r-bioc-gviz.

      from  9b398ab   Moved packaging from SVN to Git
       new  283e7b2   New upstream version 1.20.0
       new  48e7ed7   Updated version 1.20.0 from 'upstream/1.20.0'
       new  fc4032a   New upstream version
       new  7187105   Standards-Version: 4.1.0 (no changes needed)
       new  43ea7bb   Upload to unstable

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                            |    4 +-
 NAMESPACE                              |    6 +
 NEWS                                   |   13 +
 R/AllClasses.R                         |   46 +-
 R/Gviz-methods.R                       |   32 +-
 R/Gviz.R                               |    7 +-
 Rplots.pdf                             |  Bin 3611 -> 3611 bytes
 build/vignette.rds                     |  Bin 225 -> 224 bytes
 debian/changelog                       |    6 +-
 debian/control                         |    2 +-
 inst/doc/Gviz.R                        |    2 +-
 inst/doc/Gviz.Rnw                      |    4 +-
 inst/doc/Gviz.pdf                      |  Bin 1454409 -> 1498771 bytes
 inst/extdata/biomartVersionsLatest.txt |    2 +-
 inst/extdata/biomartVersionsNow.txt    |    2 +-
 inst/scripts/documentation.R           |    2 +
 man/AlignedReadTrack-class.Rd          |  712 +++++------
 man/AlignmentsTrack-class.Rd           |    3 +
 man/AnnotationTrack-class.Rd           |    5 +-
 man/BiomartGeneRegionTrack-class.Rd    |  400 +++---
 man/CustomTrack-class.Rd               |    8 +-
 man/DataTrack-class.Rd                 |  230 ++--
 man/DisplayPars-class.Rd               |    1 +
 man/GdObject-class.Rd                  |    3 +
 man/GeneRegionTrack-class.Rd           |    5 +-
 man/GenomeAxisTrack-class.Rd           |  474 ++++----
 man/HighlightTrack-class.Rd            |    5 +-
 man/IdeogramTrack-class.Rd             |  120 +-
 man/ImageMap-class.Rd                  |    1 +
 man/NumericTrack-class.Rd              |    1 +
 man/OverlayTrack-class.Rd              |    5 +-
 man/RangeTrack-class.Rd                |  558 ++++-----
 man/ReferenceTrack-class.Rd            |    1 +
 man/SequenceTrack-class.Rd             |   11 +-
 man/StackedTrack-class.Rd              |  600 ++++-----
 man/UcscTrack.Rd                       |    1 +
 man/collapsing.Rd                      |    1 +
 man/datasets.Rd                        |    1 +
 man/exportTracks.Rd                    |    1 +
 man/grouping.Rd                        |    1 +
 man/plotTracks.Rd                      |    1 +
 man/settings.Rd                        | 2089 ++++++++++++++++++++------------
 vignettes/Gviz.Rnw                     |    4 +-
 43 files changed, 3056 insertions(+), 2314 deletions(-)

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