[med-svn] [r-bioc-gviz] branch upstream updated (f7b048c -> 283e7b2)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository r-bioc-gviz.

      from  f7b048c   New upstream version 1.18.1
       new  283e7b2   New upstream version 1.20.0

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                            |    4 +-
 NAMESPACE                              |    6 +
 NEWS                                   |   13 +
 R/AllClasses.R                         |   46 +-
 R/Gviz-methods.R                       |   32 +-
 R/Gviz.R                               |    7 +-
 Rplots.pdf                             |  Bin 3611 -> 3611 bytes
 build/vignette.rds                     |  Bin 225 -> 224 bytes
 inst/doc/Gviz.R                        |    2 +-
 inst/doc/Gviz.Rnw                      |    4 +-
 inst/doc/Gviz.pdf                      |  Bin 1454409 -> 1498771 bytes
 inst/extdata/biomartVersionsLatest.txt |    2 +-
 inst/extdata/biomartVersionsNow.txt    |    2 +-
 inst/scripts/documentation.R           |    2 +
 man/AlignedReadTrack-class.Rd          |  712 +++++------
 man/AlignmentsTrack-class.Rd           |    3 +
 man/AnnotationTrack-class.Rd           |    5 +-
 man/BiomartGeneRegionTrack-class.Rd    |  400 +++---
 man/CustomTrack-class.Rd               |    8 +-
 man/DataTrack-class.Rd                 |  230 ++--
 man/DisplayPars-class.Rd               |    1 +
 man/GdObject-class.Rd                  |    3 +
 man/GeneRegionTrack-class.Rd           |    5 +-
 man/GenomeAxisTrack-class.Rd           |  474 ++++----
 man/HighlightTrack-class.Rd            |    5 +-
 man/IdeogramTrack-class.Rd             |  120 +-
 man/ImageMap-class.Rd                  |    1 +
 man/NumericTrack-class.Rd              |    1 +
 man/OverlayTrack-class.Rd              |    5 +-
 man/RangeTrack-class.Rd                |  558 ++++-----
 man/ReferenceTrack-class.Rd            |    1 +
 man/SequenceTrack-class.Rd             |   11 +-
 man/StackedTrack-class.Rd              |  600 ++++-----
 man/UcscTrack.Rd                       |    1 +
 man/collapsing.Rd                      |    1 +
 man/datasets.Rd                        |    1 +
 man/exportTracks.Rd                    |    1 +
 man/grouping.Rd                        |    1 +
 man/plotTracks.Rd                      |    1 +
 man/settings.Rd                        | 2089 ++++++++++++++++++++------------
 vignettes/Gviz.Rnw                     |    4 +-
 41 files changed, 3051 insertions(+), 2311 deletions(-)

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