[med-svn] [r-bioc-phyloseq] 04/11: TODO: Sort out not fullfilled ade4 (>= 1.7.2) (ade has version 1.7-4) * New upstream version * Convert to dh-r * Generic BioConductor homepage * d/watch: version=4

[Andreas Tille]

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in repository r-bioc-phyloseq.

commit 1ab5155172bb2a3d84bfb199bb156246df68bcdb
Author: Andreas Tille <tille at debian.org>
Date:   Fri Nov 11 09:55:40 2016 +0000

      TODO: Sort out not fullfilled ade4 (>= 1.7.2) (ade has version 1.7-4)
      * New upstream version
      * Convert to dh-r
      * Generic BioConductor homepage
      * d/watch: version=4
---
 debian/changelog | 10 ++++++++++
 debian/control   | 19 +++++--------------
 debian/copyright |  2 +-
 debian/rules     |  4 ++--
 debian/watch     |  2 +-
 5 files changed, 19 insertions(+), 18 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 490d3b2..5b84268 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,13 @@
+r-bioc-phyloseq (1.18.0-1) UNRELEASED; urgency=medium
+
+  TODO: Sort out not fullfilled ade4 (>= 1.7.2) (ade has version 1.7-4)
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+  * d/watch: version=4
+
+ -- Andreas Tille <tille at debian.org>  Fri, 11 Nov 2016 10:41:03 +0100
+
 r-bioc-phyloseq (1.16.2-1) unstable; urgency=low
 
   * Initial release (closes: #837600)
diff --git a/debian/control b/debian/control
index f695292..e862956 100644
--- a/debian/control
+++ b/debian/control
@@ -4,7 +4,7 @@ Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-bioc-biobase,
                r-bioc-biostrings,
@@ -20,23 +20,14 @@ Build-Depends: debhelper (>= 9),
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-phyloseq/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-phyloseq/trunk/
-Homepage: http://bioconductor.org/packages/release/bioc/html/phyloseq.html
+Homepage: https://bioconductor.org/packages/phyloseq/
 
 Package: r-bioc-phyloseq
 Architecture: all
 Depends: ${R:Depends},
-         ${misc:Depends},
-         r-bioc-biobase,
-         r-bioc-biostrings,
-         r-bioc-biomformat,
-         r-bioc-multtest,
-         r-cran-ade4,
-         r-cran-ape,
-         r-cran-data.table,
-         r-cran-foreach,
-         r-cran-ggplot2,
-         r-cran-igraph,
-         r-cran-vegan
+         ${misc:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: GNU R handling and analysis of high-throughput microbiome census data
  The Bioconductor module phyloseq provides a set of classes and tools to
  facilitate the import, storage, analysis, and graphical display of
diff --git a/debian/copyright b/debian/copyright
index fb9604d..b73fdcc 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,7 +1,7 @@
 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: phyloseq
 Upstream-Contact: Paul J. McMurdie <mcmurdie at stanford.edu>
-Source: http://bioconductor.org/packages/release/bioc/html/phyloseq.html
+Source: https://bioconductor.org/packages/phyloseq/
 
 Files: *
 Copyright: 2013-2016 Paul J. McMurdie <mcmurdie at stanford.edu>
diff --git a/debian/rules b/debian/rules
index aeb12b3..68d9a36 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,4 +1,4 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
+%:
+	dh $@ --buildsystem R
diff --git a/debian/watch b/debian/watch
index fb8b07a..0685e13 100644
--- a/debian/watch
+++ b/debian/watch
@@ -1,3 +1,3 @@
-version=3
+version=4
 opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \
  http://www.bioconductor.org/packages/release/bioc/html/phyloseq.html .*/phyloseq_([\d\.]+)\.tar\.gz

-- 
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