[med-svn] [r-bioc-phyloseq] 08/11: Fix versioned depends from r-cran-ade4

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-phyloseq.

commit 41ef25b263efa5c73c05ac977ef7893da8ed5c69
Author: Andreas Tille <tille at debian.org>
Date:   Tue Jan 10 08:39:25 2017 +0000

    Fix versioned depends from r-cran-ade4
---
 debian/changelog                                |  7 +++++++
 debian/patches/fix_r-cran-ade4_versioning.patch | 21 +++++++++++++++++++++
 debian/patches/series                           |  1 +
 3 files changed, 29 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index b8d5743..3798922 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+r-bioc-phyloseq (1.19.1-2) unstable; urgency=medium
+
+  * Fix versioned depends from r-cran-ade4
+    Closes: #850767
+
+ -- Andreas Tille <tille at debian.org>  Tue, 10 Jan 2017 09:31:39 +0100
+
 r-bioc-phyloseq (1.19.1-1) unstable; urgency=medium
 
   * New upstream version
diff --git a/debian/patches/fix_r-cran-ade4_versioning.patch b/debian/patches/fix_r-cran-ade4_versioning.patch
new file mode 100644
index 0000000..7149493
--- /dev/null
+++ b/debian/patches/fix_r-cran-ade4_versioning.patch
@@ -0,0 +1,21 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 10 Jan 2017 08:53:44 +0100
+Description: Phyloseq upstream does not distinguish between '.' and '-' in
+ version specification.  Due to automatic calculation of dependencies via
+ ${R:Depends} the wrongly versioned relation to r-cran-ade4 ends up in the
+ control information of the package.  This patch fixes the relation.
+ .
+ See
+   https://lists.alioth.debian.org/pipermail/debian-med-packaging/2016-November/047737.html
+
+--- a/DESCRIPTION
++++ b/DESCRIPTION
+@@ -10,7 +10,7 @@ Author: Paul J. McMurdie <joey711 at gmail.
+     Susan Holmes <susan at stat.stanford.edu>, with
+     contributions from Gregory Jordan and Scott Chamberlain
+ License: AGPL-3
+-Imports: BiocGenerics (>= 0.18.0), ade4 (>= 1.7.4), ape (>= 3.4),
++Imports: BiocGenerics (>= 0.18.0), ade4 (>= 1.7-4), ape (>= 3.4),
+         biomformat (>= 1.0.0), Biostrings (>= 2.40.0), cluster (>=
+         2.0.4), data.table (>= 1.9.6), foreach (>= 1.4.3), ggplot2 (>=
+         2.1.0), igraph (>= 1.0.1), methods (>= 3.3.0), multtest (>=
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..3ab221a
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+fix_r-cran-ade4_versioning.patch

-- 
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