[med-svn] [r-cran-distory] 04/14: Updated version 1.4.2 from 'upstream/1.4.2'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-cran-distory.

commit 46aeb596ba4523c39372d97170b3b97efee214eb
Merge: f7e80d4 8b18df9
Author: Andreas Tille <tille at debian.org>
Date:   Sat Sep 23 07:15:08 2017 +0200

    Updated version 1.4.2 from 'upstream/1.4.2'
    
    with Debian dir 81d0aacdf6afd032657465e06a71abf726a0454f

 DESCRIPTION                  |  15 ++
 MD5                          |  26 ++
 NAMESPACE                    |   6 +
 R/bethe.tree.R               |  35 +++
 R/bin.multiPhylo.R           |  17 ++
 R/dist.multiPhylo.R          | 183 ++++++++++++++
 R/gromov.hyperbolicity.R     |  30 +++
 R/mcmc.target.seq.R          | 135 +++++++++++
 R/orthant.boundary.tree.R    |  32 +++
 R/phylo.diff.R               |  79 +++++++
 R/position.leverage.R        |  33 +++
 R/zzz.R                      |   5 +
 man/bethe.tree.Rd            |  56 +++++
 man/bin.multiPhylo.Rd        |  60 +++++
 man/dist.multiPhylo.Rd       | 122 ++++++++++
 man/distory-package.Rd       |  51 ++++
 man/gromov.hyperbolicity.Rd  |  75 ++++++
 man/mcmc.target.seq.Rd       | 136 +++++++++++
 man/orthant.boundary.tree.Rd |  73 ++++++
 man/phylo.diff.Rd            | 107 +++++++++
 man/position.leverage.Rd     |  71 ++++++
 src/newick.cpp               | 318 +++++++++++++++++++++++++
 src/newick.h                 |  19 ++
 src/phydist_r.cpp            | 383 ++++++++++++++++++++++++++++++
 src/phylo.h                  | 100 ++++++++
 src/treedist-stripped.cpp    | 553 +++++++++++++++++++++++++++++++++++++++++++
 src/treedist.h               |  32 +++
 27 files changed, 2752 insertions(+)

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