[med-svn] [r-cran-seqinr] 01/15: Add packaging for seqinr

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-cran-seqinr.

commit ad6e339aaf9e77e1fad73db511bf74d834e92694
Author: Andreas Tille <tille at debian.org>
Date:   Tue May 12 12:52:03 2015 +0000

    Add packaging for seqinr
---
 debian/changelog         |  5 +++++
 debian/compat            |  1 +
 debian/control           | 22 ++++++++++++++++++++++
 debian/copyright         | 27 +++++++++++++++++++++++++++
 debian/rules             |  3 +++
 debian/source/format     |  1 +
 debian/upstream/metadata |  9 +++++++++
 debian/watch             |  2 ++
 8 files changed, 70 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..858035b
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-cran-seqinr (3.1-3-1) UNRELEASED; urgency=medium
+
+  * Initial upload (Closes: #???)
+
+ -- Andreas Tille <tille at debian.org>  Sat, 09 May 2015 08:52:18 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..1057bbc
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,22 @@
+Source: r-cran-seqinr
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>,
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev
+Standards-Version: 3.9.6
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-seqinr/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-seqinr/
+Homepage: http://cran.r-project.org/web/packages/seqinr
+
+Package: r-cran-seqinr
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${R:Depends}
+Description: GNU R Biological Sequences Retrieval and Analysis
+ Exploratory data analysis and data visualization for biological sequence
+ (DNA and protein) data. Includes also utilities for sequence data
+ management under the ACNUC system.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..329a95b
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,27 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Simon Penel <simon.penel at univ-lyon1.fr>
+Upstream-Name: seqinr
+Source: http://cran.r-project.org/web/packages/seqinr/
+
+Files: *
+Copyright: 2007-2014 Delphine Charif, Jean R. Lobry, Anamaria Necsulea,
+                     Leonor Palmeira, Simon Penel, Guy Perriere
+License: GPL-2+
+
+Files: debian/*
+Copyright: 2015 Andreas Tille <tille at debian.org>
+License: GPL-2+
+
+License: GPL-2+
+    This program is free software; you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation; either version 2 of the License, or
+    (at your option) any later version.
+ .
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+ .
+ On Debian systems, the complete text of the GNU General Public License
+ version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..2fbba2d
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..de4ab13
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,9 @@
+Reference:
+  Author: Delphine Charif and Jean R. Lobry
+  Title: "SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis"
+  Booktitle: "Structural approaches to sequence evolution: Molecules, networks, populations"
+  Editor: Ugo Bastolla and Markus Porto and H. Eduardo Roman and Michele Vendruscolo
+  ISBN: 978-3-540-35305-8
+  Year: 2007
+  Pages: 207-232
+  URL: http://link.springer.com/book/10.1007%2F978-3-540-35306-5
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..c2e660b
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=3
+http://cran.r-project.org/src/contrib/seqinr_([\d.-]*)\.tar.gz

-- 
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