[med-svn] [r-cran-seqinr] 13/15: Updated version 3.4-5 from 'upstream/3.4-5'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r-cran-seqinr.

commit 18dfad9e5798643c5f95dc375e31b03d900a256a
Merge: 0c1a1a4 c7de922
Author: Andreas Tille <tille at debian.org>
Date:   Sat Sep 23 08:36:10 2017 +0200

    Updated version 3.4-5 from 'upstream/3.4-5'
    
    with Debian dir 5ebb0dcf831d9af92313ee851a562f8ecba16bb6

 DESCRIPTION                       |  21 ++--
 MD5                               |  86 ++++++++-------
 NAMESPACE                         |   4 +-
 NEWS                              |   1 +
 R/dotchart.uco.R                  |  75 +++++++++++++
 R/kaks.R                          |  12 ++-
 R/read.alignment.R                |  17 +--
 R/uco.R                           |  78 --------------
 data/AnoukResult.RData            | Bin 319 -> 319 bytes
 data/ECH.RData                    | Bin 38356 -> 38432 bytes
 data/EXP.RData                    | Bin 1066 -> 1066 bytes
 data/JLO.RData                    | Bin 39576 -> 39576 bytes
 data/SEQINR.UTIL.RData            | Bin 1775 -> 1775 bytes
 data/aacost.RData                 | Bin 638 -> 638 bytes
 data/aaindex.RData                | Bin 81845 -> 81830 bytes
 data/caitab.RData                 | Bin 941 -> 941 bytes
 data/chargaff.RData               | Bin 351 -> 351 bytes
 data/clustal.RData                | Bin 422 -> 422 bytes
 data/datalist                     |   1 +
 data/dinucl.RData                 | Bin 65740 -> 65740 bytes
 data/ec999.RData                  | Bin 317767 -> 317766 bytes
 data/fasta.RData                  | Bin 1028 -> 1029 bytes
 data/gcO2.rda                     | Bin 6076 -> 6098 bytes
 data/gcT.rda                      | Bin 17828 -> 17860 bytes
 data/gs500liz.RData               | Bin 176 -> 176 bytes
 data/identifiler.RData            | Bin 554 -> 554 bytes
 data/kaksTorture.RData            | Bin 0 -> 2220 bytes
 data/m16j.RData                   | Bin 418892 -> 418884 bytes
 data/mase.RData                   | Bin 543 -> 543 bytes
 data/msf.RData                    | Bin 838 -> 838 bytes
 data/pK.RData                     | Bin 322 -> 322 bytes
 data/phylip.RData                 | Bin 276 -> 276 bytes
 data/prochlo.RData                | Bin 412468 -> 412468 bytes
 data/revaligntest.RData           | Bin 435 -> 435 bytes
 data/sysdata.rda                  | Bin 1775 -> 1775 bytes
 data/toyaa.RData                  | Bin 164 -> 164 bytes
 data/toycodon.RData               | Bin 195 -> 195 bytes
 data/waterabs.RData               | Bin 568 -> 568 bytes
 inst/sequences/kaks-torture.fasta | 145 +++++++++++++++++++++++++
 man/dotchart.uco.Rd               |  10 +-
 man/gcO2.Rd                       |   2 +-
 man/kaks-torture.Rd               |  36 +++++++
 man/kaks.Rd                       |  46 +++++---
 man/oriloc.Rd                     |   4 +-
 src/getzlibsock.c                 |   3 +-
 src/kaks.c                        | 222 ++++++++++++++++++++------------------
 src/packagename_init.c            |  43 ++++++++
 47 files changed, 536 insertions(+), 270 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-seqinr.git