[med-svn] [r-cran-seqinr] 01/01: Add README.source to document binary data, upload to unstable

[Andreas Tille]

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in repository r-cran-seqinr.

commit 87ba1d196d66620d7fe7404a35cbc671f8daa684
Author: Andreas Tille <tille at debian.org>
Date:   Sat Sep 23 09:13:48 2017 +0200

    Add README.source to document binary data, upload to unstable
---
 debian/README.source | 125 +++++++++++++++++++++++++++++++++++++++++++++++++++
 debian/changelog     |   5 ++-
 2 files changed, 128 insertions(+), 2 deletions(-)

diff --git a/debian/README.source b/debian/README.source
new file mode 100644
index 0000000..6dd364d
--- /dev/null
+++ b/debian/README.source
@@ -0,0 +1,125 @@
+Explanation for binary files inside source package according to
+  http://lists.debian.org/debian-devel/2013/09/msg00332.html
+
+Files: data/aacost.RData
+Documentation: man/aacost.Rd
+  Aerobic cost of amino-acids in Escherichia coli and G+C classes
+
+Files: data/aaindex.RData
+Documentation: man/aaindex.Rd
+  List of 544 physicochemical and biological properties for the 20 amino-acids
+
+Files: data/AnoukResult.RData
+Documentation: man/AnoukResult.Rd
+  Expected numeric results for Ka and Ks computation
+
+Files: data/caitab.RData
+Documentation: man/caitab.Rd
+  Codon Adaptation Index (CAI) w tables
+
+Files: data/chargaff.RData
+Documentation: man/chargaff.Rd
+  Base composition in ssDNA for 7 bacterial DNA
+
+Files: data/clustal.RData
+Documentation: man/clustal.Rd
+  Example of results obtained after a call to read.alignment
+
+Files: data/dinucl.RData
+Documentation: man/dinucl.Rd
+  Mean zscore on 242 complete bacterial chromosomes
+
+Files: data/ec999.RData
+Documentation: man/ec999.Rd
+  999 coding sequences from E. coli
+
+Files: data/ECH.RData
+Documentation: man/ECH.Rd
+  Forensic Genetic Profile Allelic Ladder Raw Data
+
+Files: data/EXP.RData
+Documentation: man/EXP.Rd
+  Vectors of coefficients to compute linear forms
+
+Files: data/fasta.RData
+Documentation: man/fasta.Rd
+  Example of results obtained after a call to read.alignment
+
+Files: data/gcO2.rda
+Documentation: man/gcO2.Rd
+  GC content and aerobiosis in bacteria
+
+Files: data/gcT.rda
+Documentation: man/gcT.Rd
+  GC content and temperature in bacteria
+
+Files: data/gs500liz.RData
+Documentation: man/gs500liz.Rd
+  GS500LIZ size standards
+
+Files: data/identifiler.RData
+Documentation: man/identifiler.Rd
+  Identifiler allele names
+
+Files: data/JLO.RData
+Documentation: man/JLO.Rd
+  Forensic Genetic Profile Raw Data
+
+Files: data/kaksTorture.RData
+Documentation: man/kaks-torture.Rd
+  Expected numeric results for Ka and Ks in extreme cases
+
+Files: data/m16j.RData
+Documentation: man/m16j.Rd
+  Fragment of the E. coli chromosome
+
+Files: data/mase.RData
+Documentation: man/mase.Rd
+  Example of results obtained after a call to read.alignment
+  This data set gives an example of a protein alignment obtained after a call to the function read.alignment on an alignment file in "mase" format.
+
+Files: data/msf.RData
+Documentation: man/msf.Rd
+  Example of results obtained after a call to read.alignment
+  This data set gives an example of a protein alignment obtained after a call to the function read.alignment on an alignment file in "msf" format.
+
+Files: data/phylip.RData
+Documentation: man/phylip.Rd
+  Example of results obtained after a call to read.alignment
+  This data set gives an example of a amino acids alignment obtained after a call to the function read.alignment on an alignment file in "phylip" format.
+
+Files: data/pK.RData
+Documentation: man/pK.Rd
+  pK values for the side chain of charged amino acids from various sources
+
+Files: data/prochlo.RData
+Documentation: man/prochlo.Rd
+  Zscore on three strains of Prochlorococcus marinus
+
+Files: data/revaligntest.RData
+Documentation: man/revaligntest.Rd
+  Three aligned nucleic acid sequences
+
+Files: data/SEQINR.UTIL.RData
+Documentation: man/SEQINR.UTIL.Rd
+  This data set gives the genetics code, the name of each codon, the IUPAC
+  one-letter code for aminoacids and the physico-chemical class of amino
+  acid and the pK values of amino acids descr ibed in Bjellqvist et al. (1993)
+
+Files: data/sysdata.rda
+Documentation: none
+  Probably some data dump
+
+Files: data/toyaa.RData
+Documentation: man/toyaa.Rd
+  A toy example of amino-acid counts in three proteins
+
+Files: data/toycodon.RData
+Documentation: man/toycodon.Rd
+  A toy example of codon counts in three coding sequences
+
+Files: data/waterabs.RData
+Documentation: man/waterabs.Rd
+  Light absorption by the water column
+
+ -- Andreas Tille <tille at debian.org>  Sat, 23 Sep 2017 08:37:51 +0200
diff --git a/debian/changelog b/debian/changelog
index c1a3edf..45efeb0 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,11 +1,12 @@
-r-cran-seqinr (3.4-5-1) UNRELEASED; urgency=medium
+r-cran-seqinr (3.4-5-1) unstable; urgency=medium
 
   * New upstream version
   * Moved packaging from SVN to Git
   * debhelper 10
   * Standards-Version: 4.1.0
+  * Add README.source to document binary data
 
- -- Andreas Tille <tille at debian.org>  Sat, 23 Sep 2017 08:34:19 +0200
+ -- Andreas Tille <tille at debian.org>  Sat, 23 Sep 2017 08:37:51 +0200
 
 r-cran-seqinr (3.3-3-1) unstable; urgency=medium
 

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