[med-svn] [r-bioc-biomformat] 07/08: Updated version 1.2.0 from 'upstream/1.2.0'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r-bioc-biomformat.

commit 774330b407c85721d1607951995fb0bccb1cffd8
Merge: 66e150e 8194683
Author: Andreas Tille <tille at debian.org>
Date:   Sun Sep 24 08:59:49 2017 +0200

    Updated version 1.2.0 from 'upstream/1.2.0'
    
    with Debian dir 1d64641aa30c5173fdb9199fffa834297fb35bfb

 DESCRIPTION                                  |  25 +
 NAMESPACE                                    |  29 +
 NEWS                                         |  78 +++
 R/BIOM-class.R                               | 829 +++++++++++++++++++++++++++
 R/IO-methods.R                               | 184 ++++++
 R/allClasses.R                               |  51 ++
 R/allPackage.R                               |  19 +
 R/validity-methods.R                         | 115 ++++
 README.md                                    |  43 ++
 build/vignette.rds                           | Bin 0 -> 218 bytes
 inst/doc/biomformat.R                        |  61 ++
 inst/doc/biomformat.Rmd                      | 151 +++++
 inst/doc/biomformat.html                     | 237 ++++++++
 inst/extdata/min_dense_otu_table.biom        |  32 ++
 inst/extdata/min_sparse_otu_table.biom       |  43 ++
 inst/extdata/min_sparse_otu_table_hdf5.biom  | Bin 0 -> 33800 bytes
 inst/extdata/rich_dense_char.biom            |  56 ++
 inst/extdata/rich_dense_otu_table.biom       |  56 ++
 inst/extdata/rich_sparse_char.biom           |  66 +++
 inst/extdata/rich_sparse_otu_table.biom      |  66 +++
 inst/extdata/rich_sparse_otu_table_hdf5.biom | Bin 0 -> 46952 bytes
 man/biom-class.Rd                            |  51 ++
 man/biom-methods.Rd                          |  73 +++
 man/biom-package.Rd                          |  21 +
 man/biom_data-methods.Rd                     |  87 +++
 man/biom_shape-methods.Rd                    |  35 ++
 man/colnames-methods.Rd                      |  35 ++
 man/header-methods.Rd                        |  29 +
 man/make_biom.Rd                             | 103 ++++
 man/matrix_element_type-methods.Rd           |  35 ++
 man/ncol-methods.Rd                          |  35 ++
 man/nrow-methods.Rd                          |  35 ++
 man/observation_metadata-methods.Rd          |  70 +++
 man/read_biom.Rd                             |  67 +++
 man/read_hdf5_biom.Rd                        |  46 ++
 man/rownames-methods.Rd                      |  35 ++
 man/sample_metadata-methods.Rd               |  68 +++
 man/show-methods.Rd                          |  26 +
 man/write_biom.Rd                            |  48 ++
 tests/testthat-biomformat.R                  |  12 +
 tests/testthat/test-IO.R                     |  71 +++
 tests/testthat/test-accessors.R              | 191 ++++++
 vignettes/biomformat.Rmd                     | 151 +++++
 43 files changed, 3465 insertions(+)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-biomformat.git