[med-svn] [r-bioc-biomformat] 01/06: New upstream version 1.4.0

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-biomformat.

commit e3617bb9af7e3dd03939b5436265de78971860d8
Author: Andreas Tille <tille at debian.org>
Date:   Sun Sep 24 09:12:05 2017 +0200

    New upstream version 1.4.0
---
 DESCRIPTION              |   4 ++--
 build/vignette.rds       | Bin 218 -> 218 bytes
 inst/doc/biomformat.html |   8 ++++----
 3 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 92f0b53..b11bdf2 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: biomformat
-Version: 1.2.0
+Version: 1.4.0
 Date: 2016-04-16
 Maintainer: Paul J. McMurdie <mcmurdie at stanford.edu>
 License: GPL-2
@@ -22,4 +22,4 @@ Collate: 'allClasses.R' 'allPackage.R' 'IO-methods.R' 'BIOM-class.R'
         'validity-methods.R'
 biocViews: DataImport, Metagenomics, Microbiome
 NeedsCompilation: no
-Packaged: 2016-10-18 00:07:59 UTC; biocbuild
+Packaged: 2017-04-25 00:27:37 UTC; biocbuild
diff --git a/build/vignette.rds b/build/vignette.rds
index 3a83c03..707a6db 100644
Binary files a/build/vignette.rds and b/build/vignette.rds differ
diff --git a/inst/doc/biomformat.html b/inst/doc/biomformat.html
index 0d5c559..1a8c72d 100644
--- a/inst/doc/biomformat.html
+++ b/inst/doc/biomformat.html
@@ -13,10 +13,10 @@
 
 <title>The biomformat package vignette</title>
 
+<link href="data:text/css;charset=utf-8,pre%20%2Eoperator%2C%0Apre%20%2Eparen%20%7B%0Acolor%3A%20rgb%28104%2C%20118%2C%20135%29%0A%7D%0Apre%20%2Eliteral%20%7B%0Acolor%3A%20%23990073%0A%7D%0Apre%20%2Enumber%20%7B%0Acolor%3A%20%23099%3B%0A%7D%0Apre%20%2Ecomment%20%7B%0Acolor%3A%20%23998%3B%0Afont%2Dstyle%3A%20italic%0A%7D%0Apre%20%2Ekeyword%20%7B%0Acolor%3A%20%23900%3B%0Afont%2Dweight%3A%20bold%0A%7D%0Apre%20%2Eidentifier%20%7B%0Acolor%3A%20rgb%280%2C%200%2C%200%29%3B%0A%7D%0Apre%20%2Estri [...]
+<script src="data:application/x-javascript;base64,dmFyIGhsanM9bmV3IGZ1bmN0aW9uKCl7ZnVuY3Rpb24gbShwKXtyZXR1cm4gcC5yZXBsYWNlKC8mL2dtLCImYW1wOyIpLnJlcGxhY2UoLzwvZ20sIiZsdDsiKX1mdW5jdGlvbiBmKHIscSxwKXtyZXR1cm4gUmVnRXhwKHEsIm0iKyhyLmNJPyJpIjoiIikrKHA/ImciOiIiKSl9ZnVuY3Rpb24gYihyKXtmb3IodmFyIHA9MDtwPHIuY2hpbGROb2Rlcy5sZW5ndGg7cCsrKXt2YXIgcT1yLmNoaWxkTm9kZXNbcF07aWYocS5ub2RlTmFtZT09IkNPREUiKXtyZXR1cm4gcX1pZighKHEubm9kZVR5cGU9PTMmJnEubm9kZVZhbHVlLm1hdGNoKC9ccysvKSkpe2JyZWFrfX19ZnVuY3Rpb24gaCh0LH [...]
 
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-<link href="data:text/css;charset=utf-8,pre%20%2Eoperator%2C%0Apre%20%2Eparen%20%7B%0Acolor%3A%20rgb%28104%2C%20118%2C%20135%29%0A%7D%0Apre%20%2Eliteral%20%7B%0Acolor%3A%20%23990073%0A%7D%0Apre%20%2Enumber%20%7B%0Acolor%3A%20%23099%3B%0A%7D%0Apre%20%2Ecomment%20%7B%0Acolor%3A%20%23998%3B%0Afont%2Dstyle%3A%20italic%0A%7D%0Apre%20%2Ekeyword%20%7B%0Acolor%3A%20%23900%3B%0Afont%2Dweight%3A%20bold%0A%7D%0Apre%20%2Eidentifier%20%7B%0Acolor%3A%20rgb%280%2C%200%2C%200%29%3B%0A%7D%0Apre%20%2Estri [...]
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 <style type="text/css">
   pre:not([class]) {
     background-color: white;
@@ -78,9 +78,9 @@ document.addEventListener("DOMContentLoaded", function() {
 <p>This is an <a href="http://www.rstudio.com/ide/docs/r_markdown">R Markdown document</a>. Markdown is a simple formatting syntax for authoring web pages. Further details on <a href="http://www.rstudio.com/ide/docs/r_markdown">R markdown here</a>.</p>
 <p>The BIOM file format (canonically pronounced “biome”) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for <a href="http://www.earthmicrobiome.org/">the Earth Microbiome Project</a> and is a <a href="http://gensc.org/">Genomics Standards Consortium</a> candidate project. Please see <a href="http://biom-format.org/">the biom-format home page</a> for more details.</p>
 <p>This demo is designed to provide an overview of the biom package to get you started using it quickly. The biom package itself is intended to be a utility package that will be depended-upon by other packages in the future. It provides I/O functionality, and functions to make it easier to with data from biom-format files. It does not (and probably should not) provide statistical analysis functions. However, it does provide tools to access data from BIOM format files in ways that are ext [...]
-<p><strong>Package versions</strong> at the time (Mon Oct 17 20:07:58 2016) of this build:</p>
+<p><strong>Package versions</strong> at the time (Mon Apr 24 20:27:33 2017) of this build:</p>
 <pre class="r"><code>library("biomformat"); packageVersion("biomformat")</code></pre>
-<pre><code>## [1] '1.2.0'</code></pre>
+<pre><code>## [1] '1.4.0'</code></pre>
 </div>
 <div id="read-biom-format" class="section level1">
 <h1><span class="header-section-number">1</span> Read BIOM format</h1>

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