[med-svn] [abacas] 01/01: Added references to registries, short description
Steffen Möller
moeller at moszumanska.debian.org
Mon Sep 25 12:16:19 UTC 2017
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moeller pushed a commit to branch master
in repository abacas.
commit a6ed4b709c65e081490085ccae5e1201f69b0941
Author: Steffen Moeller <moeller at debian.org>
Date: Mon Sep 25 14:14:29 2017 +0200
Added references to registries, short description
---
debian/changelog | 9 +++++++++
debian/control | 11 +++++++----
debian/upstream/metadata | 14 ++++++++++++--
3 files changed, 28 insertions(+), 6 deletions(-)
diff --git a/debian/changelog b/debian/changelog
index 791fd50..d0c0699 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,12 @@
+abacas (1.3.1-5) UNRELEASED; urgency=medium
+
+ * debian/upstream/metadata:
+ - References to registries
+ - yamllint clean
+ * debian/control: improved description
+
+ -- Steffen Moeller <moeller at debian.org> Mon, 25 Sep 2017 14:13:16 +0200
+
abacas (1.3.1-4) unstable; urgency=medium
[ Steffen Moeller ]
diff --git a/debian/control b/debian/control
index 283708f..e4fca86 100644
--- a/debian/control
+++ b/debian/control
@@ -14,10 +14,13 @@ Architecture: all
Depends: ${perl:Depends},
${misc:Depends},
mummer
-Description: Algorithm Based Automatic Contiguation of Assembled Sequences
- ABACAS is intended to rapidly contiguate (align, order, orientate),
- visualize and design primers to close gaps on shotgun assembled contigs
- based on a reference sequence.
+Recommends:
+ primer3
+Description: close gaps in genomic alignments from short reads
+ ABACAS (Algorithm Based Automatic Contiguation of Assembled Sequences)
+ intends to rapidly contiguate (align, order, orientate), visualize and
+ design primers to close gaps on shotgun assembled contigs based on a
+ reference sequence.
.
ABACAS uses MUMmer to find alignment positions and identify syntenies
of assembled contigs against the reference. The output is then processed
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
index 9e661a9..908f86c 100644
--- a/debian/upstream/metadata
+++ b/debian/upstream/metadata
@@ -1,5 +1,7 @@
Reference:
- Author: Samuel Assefa and Thomas M. Keane and Thomas D. Otto and Chris Newbold and Matthew Berriman
+ Author: >
+ Samuel Assefa and Thomas M. Keane and Thomas D. Otto and Chris
+ Newbold and Matthew Berriman
Title: "ABACAS: algorithm-based automatic contiguation of assembled sequences"
Journal: Bioinformatics
Year: 2009
@@ -9,4 +11,12 @@ Reference:
DOI: 10.1093/bioinformatics/btp347
PMID: 19497936
URL: http://bioinformatics.oxfordjournals.org/content/25/15/1968
- eprint: http://bioinformatics.oxfordjournals.org/content/25/15/1968.full.pdf+html
+ eprint: "http://bioinformatics.oxfordjournals.org/content/\
+ 25/15/1968.full.pdf+html"
+Registry:
+ - Name: bio.tools
+ Entry: NA
+ - Name: OMICtools
+ Entry: OMICS_06933
+ - Name: SciCrunch
+ Entry: NA
--
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