[med-svn] [insighttoolkit] annotated tag upstream/4.12.1-dfsg1 created (now 17bfa62)

Gert Wollny gewo at moszumanska.debian.org
Mon Sep 25 18:28:45 UTC 2017


This is an automated email from the git hooks/post-receive script.

gewo pushed a change to annotated tag upstream/4.12.1-dfsg1
in repository insighttoolkit.

        at  17bfa62   (tag)
   tagging  c736b4357fd645c71615533202fd8eb291e3a226 (commit)
 tagged by  Gert Wollny
        on  Mon Sep 25 17:38:29 2017 +0000

- Log -----------------------------------------------------------------
Upstream version 4.12.1-dfsg1

Andreas Tille (1):
      s/Debian-Med/Debian Med/

Charles Plessy (1):
      Added `Vcs-Browser' and `Vcs-Svn' fields.

David Paleino (1):
      Small fixes :)

Dominique Belhachemi (3):
      generate documentation with doxygen
      fixed path
      fixed lintian warning

Gert Wollny (107):
      update dependencies and add test rule to dump testlog on failing test
      add Gianfranco's updates and upstream patches to fix tests that fail on i386
      update control file
      Add patch that tests for SSE2 support before including emminsitr.h
      add adding new patch to changelog entry
      start preparation of the 4.6 package
      remove upstream applied patches
      update swig dependency
      remove swig version check and  warning
      add the actual patch
      revert the change of swig version. CMake was only warning about a version below 3.0.
      Update patch descriptions
      Correct dependency on gccxml to remove lintian warning
      enable hdf5 and document why system double-conversion can not be used
      Fix the changelog entries because they were too long.
      correct the CVS entry and a stupid typo in the rules
      correct some lintian warnings
      prepare package for new upstream
      Update dependency to new, un-versioned libdcmtk-dev
      d/changelog: add changelog entry for new dependency
      d/control: regenerate
      Prepare new upload
      d/changelog: Add bug-closing comment
      d/control: Add libxml2-dev to build dependencies
      Revert dependency on libxml-dev and set minimal version of libdcmtk-dev instead
      d/changelog: set for release
      Add libcharls-dev to build dependencies.
      Enable use of system double-conversion
      Update double-conversion patch
      Prepare compile against new gdcm-2.6
      Correct build depends and prepare for upload
      Correct build depends because ranges can not ne given
      Tighten dependency on libdcmtk-dev version
      Update dependencies for libpng-dev and libdcmtk-dev
      Work on gcc-6 transition
      Work on gcc-6 transition, add patch
      Prepare new upstrema release
      Prepare new upstream
      really use system doubleconversion
      d/rules: explicitely disable KWStyle
      Correct changelog
      Set minimal version of CastXML
      Apply changes to d/control.in file
      d/rules: Correct python package rules
      Update standards version
      Update package to fix tests on i386
      Prepare changelog for new upload and correct castxml dependency
      Correct closing bug number
      Correct lost libpng-dev dependency, and add libdouble-conversion-dev
      Update changelog for release
      Set libdcmtk-dev depends correctly also in control.in
      Prepare changelog for upload
      Prepare for upload
      Start testing new upstream release
      d/rules: Remove VNL installation of valgring surpression file
      Update standards version
      Switch to automatically created debug packages
      Work on correcting the copyright file
      Add patch to simplyfy arch-all, thanks: Santiago Vila
      update changelog
      correct copyright excludes
      correct copyright excludes
      yet another excludes correction
      Add patches to correct compilation and enable system nifti
      more copyright updates
      more d/copyright updates and patch documentation
      Update watch file to adhere to dfsg renaming
      Update d/watch and rules for DFSG nameing scheme
      Add libnifti-dev as dependency
      Change +dfsg to -dfsg because cmake does complain
      Correct package building on i386
      d/p/vnl_.. Add patch description
      correct copyright and watchfile for removing lintian warnings
      correct control.in and set secure browser url
      Correct typo in changelog
      correct another typo in the changelog
      correct minor copyright errors
      correct some path in copyright file
      Upload to unstable
      Remove build files after install, Closes: #832655
      Add default contructor in itkTriangleHelper.h, Related: #835761
      Correct python bindings, Closes: #835761
      backport upstream patch
      prepare upload
      New upstream release 4.10.1
      Prepare new upstream version
      Start packaging of new upstream
      Prepare for upload
      Correct version
      Correct libpath in test
      Start packaging ITK-4.12
      Update build rules
      Update some years in d/copyright
      make release number for experimental
      Add patch to move template method before its use
      Enable SSE2 on i386
      Update patch and i386 build flags
      Try force standard double accuracy on x86
      Correct i386 flags
      Correct i386 flags for c++ (-fexcess-precision not supported
      upload to unstable
      Prepare upload for gcc7 name mangling change
      Upload without python bindings to avouid autoremval
      Start preparing to upload new upstream version
      Upload first to experimental
      Reupload to unstable
      New upstream version 4.12.1-dfsg1

Mathieu Malaterre (13):
      lintian tcl8.4-insighttoolkit3 binary-without-manpage
      fix typo
      minor style issue
      Prepare for system VXL but leave option OFF for now
      Make sure GZIP has option --best and --no-name
      fix viewvc URL
      Fix URL in both files this time
      Use system installed VXL
      remove self from uploaders
      Add GDCM and double conversion
      prepare upload
      need to patch itk
      Use convenient copy for now

Steve M. Robbins (238):
      
      [svn-inject] Applying Debian modifications to trunk
      Changes to bring repo up to 3.2.0-2
      New upstream 3.4.0.  Enable concept checking.  Change maintainer to debian-med packaging team.
      Fix the changelog dateline.
      Remove the homepage url from each package description.
      Add Python binding package python-insighttoolkit.
      Add python-dev build-dep.
      Rename insighttoolkit.1 to ...3, since it is in Section 3.
      Fix two lintian warnings.
      Finalize 3.4.0-2
      Build with MINC2.
      Build with python-numarray.
      Build wth FFTW.
      Override lintian warning package-name-doesnt-match-sonames.
      Add libfftw3-dev to -dev package dependencies.  Remove MINC2 support as it is only in Review (which is not built).
      Fix libinsighttoolkit-dev Section from libdevel to devel, to agree with overrides file.
      First crack at fixing the GCC 4.3 compile errors.
      Throw away previous gcc43 patch and create new
      Install link lib libSwigPythonRuntime.so
      Set distribution to unstable
      Adapt to new upstream 3.6.0.
      move python-insighttoolkit rules after libinsighttoolkit-dev
      Add major version number to package names.
      Add note to eradicate occurences of build dir in output files.
      Add new package tcl8.4-insighttoolkit3.
      Change section for libinsighttoolkit3-dev from devel to libdevel
      make build verbose
      Add lintian override.
      Change distribution in preparation for upload.
      Fix to build using cmake 2.6
      Add build-dep to ensure gccxml with support for GCC 4.3 builtins.  Hope that this will fix build errors.
      Remove notes about build errors.
      New patch to work around gccxml bug where -I/usr/include breaks #include_next.
      Update gcc43.patch.
      Fix FTBFS errors:
      Tweak gcc43 patch and update debhelper dependency version.
      Qualify typedefs in itkAutomaticTopologyMeshSource.
      Account for package name changes.
      Update for release 3.8.0.
      Add get-orig-source target.
      New patch for nifti library versioning.  Update Standards version to 3.8.0.
      Fix the get-orig-source rule: the Debian tar ball needs underscore before version, not dash.
      Remove old cruft.
      Build-depend on uuid-dev, update download URL, support parallel build.
      Remove patch; applied upstream in version 3.10.0
      Updates for upstream version 3.10.0.
      Back out of generating docs with doxygen as it takes a very long time.  In future, will package the doc tarball available from itk.org.
      Update notes on doc packaging.
      Updates for new upstream 3.10.1.
      Targetting to experimental, due to ongoing lenny release process.
      Fix lintian warnings.
      Changes for new upstream 3.12.0
      For -dev package: add recommends for uuid-dev, change libfftw3-dev from depends to recommends.
      New upstream.  Add template control.in file.
      Release to unstable.
      Install itkwish manpage.  Thanks, Mathieu!
      Remove parallel build, since it is broken.
      Install itkwish manpage in correct package (pkg_tcl).
      Ensure new slatec library is built with a SOVERSION.
      Use assembly implementation of rounding code only on ix86 machines.
      Build with system GDCM.
      Building with libgdcm2-dev also requires libssl-dev.
      Building with libgdcm2-dev also requires libexpat1-dev.
      Add more build-deps from libgdcm.
      Add patch notes.
      Remove patches applied upstream in 3.16.0.
      New.  Refer to quilt's README.
      Build depend on current versions of both cableswig and gccxml
      Include dependencies mistakenly added to control in past few months.
      Update version strings to 3.16.
      Update control from template file.
      New version.
      Remove support for obsoleted python-numarray.
      Preliminary support for Java bindings.  More to do; c.f.
      Build with tcl 8.5.
      Build depend on javahelper, use jh_installlibs to install
      Ready for 3.16.0-2 upload.
      Patch to load JNI libs from /usr/lib/jni.
      Package tcl8.5-insighttoolkit3 add conflict with tcl8.4-insighttoolkit3 (both contain itkwish).
      Adjust to upstream patch set.
      Update versions of ITK, cableswig and gccxml.  Update standards-version.
      Updates for upstream version 3.18.0.
      Update copyright to note that license is GPL-2.  Override lintian diagnostics.
      Remove version restriction from default-jdk.
      New patch hppa-complex-long-double.patch to fix hppa link error.
      Fix build on hppa and bug #580816.
      Remove all traces of ITKBuildSettings.cmake
      Update version requirement for gccxml to 0.9.0+cvs20100501-2, to deal with <complex> and the inline namespace issue.
      Use cdbs class cmake.mk instead of makefile.mk; drop common-configure-arch rule.
      Remove clean rule fragment; use clean-builddir rule instead.
      Avoid memory leak in itkNiftiImageIO.
      Intall valgrind suppression files.
      Minimal changes to get 3.20.0 to compile.
      Remove unneeded gccxml workaround.
      Avoid complete rebuild by make install.
      Enable parallel building.  Target for experimental due to Debian freeze.
      Switch to source package 3.0 (quilt) format.
      Add Review/Statistics.
      Merge fix for #600867 from branches/3.18.0
      Switch to source v3.0 format.  Fix a build error and an upgrade file conflict.
      Remove unused patch; replaced by metaio-test-vtk_source.patch.
      Disable parallel building; broken with cswig wrapping.
      Update standards version to 3.9.1.
      Add Code/Review to ITK build.
      Switch to WrapITK for java, python, tcl language bindings.  Compiles, but does not successfully create packages.  Need to tweak the installed files lists.
      Remove parallel build again; still fails with WrapITK wrapping.
      Add more dimensions and pixel types, taken from Paul Novotny's list.
      Add WRAP_Iterators
      Quote the semi-colon-separated value.
      Don't wrap Iterators.  Wrapping/WrapITK/CMakeLists.txt notes
      Finalize release time.
      Fix up install rules.
      Remove obsolete patch.
      Add wrapitk.patch.
      Install libSwigJava into /usr/lib.
      Use ITK_LIBRARY_PROPERTIES to properly version the Tcl shared libs.
      Apply patch 0001-Added-PyBuffer-and-ItkVtkGlue-to-build.patch from Paul Novotny, as emailed to debian-med 2011-01-22.
      Most of patch 0002-Fixed-some-things-in-the-rules-file.patch from Paul
      Applied patch 0003-Added-a-few-Registration-Optimizers-for-Wrapping.patch
      Adjust build-deps.
      Include Gaetan's patch to split the wrappers into smaller modules.
      Disable parallel build.
      Build with newest gccxml and cableswig.
      Fix build failures due to ptrdiff_t.  Enable optimized registration & transform I/O factories.  Fix tcl package dir.
      Build-depend on newest gccxml.
      Require newest gccxml.
      Fix embedded library override, due to lintian tag changing.
      Fix override for libjpeg, openjpeg.
      Replace patch with new version that splits filter wrapping further.
      Report available disk space prior to building.
      Build using dh_python2
      Return to using python version "current"
      Remove now-unnecessary dependency on python-support.  Fix other python configuration described in http://wiki.debian.org/Python/TransitionToDHPython2#before_you_begin
      Remove definition of unsupported option ITK_USE_SYSTEM_JPEG.  Follow upstream to install python wrapping into /usr/lib/InsightToolkit.
      Remove now-obsolete variables.
      Set build type to RelWithDebInfo (lowers optimization to -O2).
      Target experimental
      Restore numpy build-dep.
      Ensure build against libtiff 4.
      Target sid.
      Remove language wrappings.
      Remove javahelper.mk include.
      commit 37ab11e9b06fd785a149c91bf0a661ef948a4807
      Rewrite using debhelper instead of cdbs.
      Restore variables inadvertently removed.
      Make example files permission fix conditional on installing $(pkg_examples).
      Remove obsolete script -- now use get-orig-source rule.
      commit b6eaacfe435b4950c376dff5f64eaba601dab616
      New upstream 3.20.1.
      commit 080e019ea85f97529d2b4383d84ebe2ba21869af
      Dependency change: -dev package depends on libgdcm2-dev.  Closes:
      Remove obsolute python build-time cruft.
      Prepare for 3.20.1-2 upload.
      Update for ITK 4.0.0.
      Fix overrides.
      Enable build of Testing and Examples.
      Update build-deps, comments in rules.  Target experimental.
      Fix call to gzgetc().
      Document new patch.
      Update for ITK 4.1.0.
      Remove gzgetc.patch.
      Enable system TIFF, build with libtiff5-dev.
      Turn off system TIFF; conflicts with VTK.
      Remove libgeotiff-dev build-dep.  Cannot remember why it was added (during ITK 4.0.0 version).
      Add Paul Novotny's fix for big-endian builds.
      Update patch meta-data.
      Dev package conflicts with libinsighttoolkit3-dev.
      Do not use system fftw.
      Add gcc4.7.patch.
      Build using gcc 4.6.  Solves build failures with gcc 4.7.
      Update to ITK 4.2.0.
      New upstream 4.2.1
      Disable use of FFTW.
      commit 473f207ae3955ea3406f7088dd4b77994174daab
      Add patches to fix i386 build errors in DigitallyReconstructedRadiograph1Test.
      Add _BSD_SOURCE to fix build failure on kfreebsd.
      New upstream and fixed BSD patch.
      Update version string in rules, plus other tidy-ups.
      Remove docs no longer shipped by upstream.
      Build using system TIFF.  Install itkTestDriver.
      Noted updated standards-version.
      Add shlibs:Depends for -dev package, due to compiled binary usr/bin/itkTestDriver
      Set release date.
      Incorporate recent changes to debian/control.
      Update to new upstream.
      New upstream, ITK  4.4
      Restrict to supported architectures
      revert architecture change
      revert architecture change
      New upstream.
      Stop using ITKV3_COMPATIBILITY because itkImageReadDICOMSeriesWriteWithDirection003Test fails.  Note also that ...001Test would also fail if it were enabled in the CMakeLists.
      build without system libraries.
      Tweak build flags and architectures.
      Remove build-dep on libgdcm2-dev.
      Remove gdcm dependency from -dev.
      Updates for new upstream 4.5.0.
      Make multi-arch.
      Final updates for 4.5.0-1.
      Remove obsoleted options ITK_USE_MINC2 and ITK_USE_REVIEW.
      Updated copyright
      Place all -DBUILD_ build options together, alphabetical order.
      Change USE_FFTWD --> ITK_USE_FFTWD, similarly for USE_FFTWF, USE_SYSTEM_FFTW
      Re-enable FFTW and Review module.
      Disable use of FFTW; remove build-dep on libfftw3-dev.
      Turn off ITK_USE_FFTW{D,F}.  The old rules with -DUSE_FFTWD:BOOL=ON, etc,
      Link libITKNrrdIO with -lm.
      Updates for release.
      Fix spelling of "unstable"
      Merge of Gert Wollny's itk4-enable-python branch into trunk.
      New upstream.
      Remove patches applied upstream.
      Modify rules to dump test log without using .ONESHELL.
      Update to newest gccxml.
      Tweak changelog entries, change distribution target to unstable for upload.
      add libhdf5-dev dep to -dev package.
      Enable ITKDeprecated module, to enable Elastix 4.7 to build.
      Need to turn on ITKV3 compatibility to enable module ITKDeprecated.
      Do not install doxygen sources.  Tweak changelog for upload to experimental.
      Upstream 4.7.2.
      Upstream patch to build VXL with GCC 5.
      Close the GCC 5 bug.
      Minimal changes to get new upstream 4.8.0 building.
      Remove obsolete patches.
      Set the location of the external data, from insighttoolkit4_4.8.0.orig-ExternalData.tar.xz.
      Remove outdated notes/todos.
      Remove obsolete comments
      Remove duplicate setting for CMAKE_VERBOSE_MAKEFILE.
      Move Module_ITKDeprecated into alphabetical order.
      Update ITK_WRAP_DIMS to new ITK_WRAP_IMAGE_DIMS.
      Sort ITK_USE_SYSTEM_*.  Remove ITK_USE_SYSTEM_LIBRARIES (redundant when we specify all libraries).
      Remove vtk build-dep.  Target the experimental distribution for the GCC5 transition.
      Remove libITKGDCM.a install rule, since stub libITKGDCM no longer built.
      Define __GCCXML__ while wrapping, for compatibility with previous builds.
      Do not use castxml-define-gccxml.patch; upstream fixed in different manner.
      Update for upstream 4.8.1.
      Set upload to unstable.
      Set to experimental.

locutusofborg-guest (1):
      Add how many GB are needed for the build prior to df in debian/rules, from smr

michi (1):
      ITKLibraryDepends.cmake: No absolute paths for libraries in default locations

paulnovo-guest (2):
      Add get-orig-source for downloading both sources
      Clean up get-orig-source in debian/rules

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