[med-svn] [dssp] branch upstream updated (48d8f78 -> 340276c)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository dssp.

      from  48d8f78   New upstream version 2.2.1
       new  340276c   New upstream version 3.0.0

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.txt            |    8 +-
 changelog             |    3 +
 src/align-2d.h        |  207 +--
 src/buffer.h          |   61 +-
 src/dssp.cpp          |  446 +++---
 src/dssp.h            |   10 +-
 src/iocif.cpp         |  748 +++++-----
 src/iocif.h           |  237 +--
 src/mas.cpp           | 2341 ++++++++++++++---------------
 src/mas.h             |   38 +-
 src/matrix.h          |  570 ++++----
 src/matrix.inl        |   16 -
 src/mkdssp.cpp        |  289 ++--
 src/primitives-3d.cpp |  571 ++++----
 src/primitives-3d.h   |  176 +--
 src/structure.cpp     | 3894 +++++++++++++++++++++++++------------------------
 src/structure.h       |  679 ++++-----
 src/utils.cpp         |  235 ++-
 src/utils.h           |   92 +-
 src/version.h         |    6 +
 20 files changed, 5474 insertions(+), 5153 deletions(-)
 mode change 100644 => 100755 src/align-2d.h
 mode change 100644 => 100755 src/dssp.cpp
 mode change 100644 => 100755 src/dssp.h
 mode change 100644 => 100755 src/iocif.cpp
 mode change 100644 => 100755 src/iocif.h
 mode change 100644 => 100755 src/mas.cpp
 mode change 100644 => 100755 src/mas.h
 mode change 100644 => 100755 src/matrix.h
 delete mode 100644 src/matrix.inl
 mode change 100644 => 100755 src/mkdssp.cpp
 mode change 100644 => 100755 src/primitives-3d.cpp
 mode change 100644 => 100755 src/primitives-3d.h
 mode change 100644 => 100755 src/structure.cpp
 mode change 100644 => 100755 src/structure.h
 mode change 100644 => 100755 src/utils.cpp
 mode change 100644 => 100755 src/utils.h
 create mode 100755 src/version.h

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