[med-svn] [biomaj] branch master created (now 22d6de0)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository biomaj.

        at  22d6de0   Standards-Version: 4.1.0 (no changes needed)

This branch includes the following new commits:

       new  0418911   Create dir for BioMAJ packaging
       new  8a6d21d   First import Add debian dir
       new  2631dcf   set debian
       new  44718aa   Delete installed files of biomaj
       new  9467b26   Remove files which are cleaned up by clean target
       new  9164a0e   Template for biomaj-watcher package, please fix!!!
       new  d79503c   Rename {post,pre}{inst,rm} files to be used only by the biomaj package and not by the biomaj-watcher package
       new  d14258d   set multiple binary packages
       new  0a915c8   use var/tmp for temp files
       new  22eb41d   use var/tmp for temp files
       new  435b6bb   use biomaj lib in WEBINF instead of shared
       new  217ee43   set biomaj jar in tomcat shared libs
       new  96e1e28   moved biomajwatcher out  as a separate package
       new  4dae76c   wrong dir remved in tar
       new  fd8f600   update get orig source to handle errors
       new  0f75d00   var/tmp is of no use
       new  c3de607   add a message
       new  3dcb4ff   update desc
       new  bd0dc4c   include commons-cli2 dependency in biomaj source
       new  7a7a2bc   include commons-cli2 dependency in biomaj source
       new  ba67552   include commons-cli2 dependency in biomaj source
       new  cbe42b2   add openjdk as build depends
       new  eed1971   set JAVA_HOME
       new  34f1b32   change delete command
       new  47cfaba   Remove useless dh-make template comment, add get-orig-source target
       new  55a27d8   README.Debian is intendet for users who just have installed the package.  Because the content of this file was about creating the upstream source I simply merged this into README.source and deleted README.Debian.
       new  0937572   update rights of gif file to supress lintian warn
       new  b368f36   update copyright file regarding some files, add java compilation at build time
       new  0c674c1   modify clean to avoid an error in somes cases
       new  30392b6   add info on copyright updates
       new  7f46cef   After adding debian/copyright header information `config-edit -application dpkg-copyright -ui none` reports problems which is IMHO caused by missing "Copyright: (C) <Author>" fields
       new  0cc5663   Use short dh notation in debian/rules
       new  ff7faf4   update copyright, update pre/post scripts to manage arguments
       new  5a2a79c   update copyright
       new  7cc3f50   Syntax corrections for ‘config-edit -application dpkg-copyright -ui none’.
       new  1002120   Enable highest compression rate of orig.tar.gz
       new  84b003e   add translation for fix 623807
       new  4c01b10   patch fix623558_remove_pid for bug #623558
       new  a0810ec   wrong email in log
       new  af01e7c   change minor version
       new  ba08df9   update changelog entries for better readability
       new  53e33ea   update header of patch, update distrib of changelog
       new  8b710c0   apply dep-3 style to patch
       new  f589a12   fix bug 624284
       new  5b7dd6f   manage conf link via debian stuff
       new  d3c04b5   remove not required upgrade mngt in postrm
       new  02b023c   remove lintian warning on debconf
       new  6b42bfb   change priority in config
       new  c77453b   remove auto added comment
       new  2b35d72   add upstream metadata
       new  46654e8   fix pending bugs
       new  28e4f28   changes rules to remove openjdk dependency
       new  dad07ba   changes rules to remove openjdk dependency
       new  c32a9a7   change email address to remove nmu error
       new  2990862   set jdk gome automatically
       new  28ccf21   change url of dir once tagged
       new  3cf7153   updates for upstream 1.2
       new  4ddca71   missing help file
       new  50c8975   manage via watch file
       new  6a8daf9   remove get-orig-source, not needed anymore
       new  555a042   update standards version
       new  b487628   update sql patch, remove unnecessary params from postins
       new  a394d20   fix mysql-server package name in suggests
       new  1456086   set mysql as Depends instead of Suggests
       new  028726d   fix minor lintian warnings
       new  62dccc3   remove copyright info for commons-cli2, removed in v1.2
       new  65ed351   refer BSD license to debian file
       new  1d1316b   change Files format according to DEP5 spec
       new  a738b1f   Series of local changes accidentially left uncommitted before.  * somewhat neat but unnecessary formatting changes  * adding uploader from upstream to vina  * rosetta build instructions  * pynast more verbose README.Debian  * snap changelog mentions upload to PPA
       new  9bae22f   add portuguese translation
       new  c422e38   fix some debconf typo
       new  dcd2fe3   fix debconf typo
       new  e657a09   add extended description to templates
       new  7e68c07   fix whitespace typos
       new  925d73b   remove jdk_home from config
       new  a128026   remove jdk_home from config
       new  fa0d740   fix license typo
       new  bd0fb20   update after debian-l10-english review
       new  6022c95   update after debian-l10-english review
       new  0cd454a   update after debian-l10-english review
       new  8d088a3   update after debian-l10-english review
       new  0e74396   update after debian-l10-english review
       new  085cd5d   update after review
       new  93bc99f   add/update translations after review
       new  659c0a8   add portuguese po
       new  2f8eb38   Renamed debian/upstream-metadata.yaml to debian/upstream.
       new  1ce536a   final translation update after trnaslation teams review
       new  b3664c6   set to unstable for upload
       new  f055f9e   add missing console file for help option
       new  993547d   set to unstable for new upload, fix missing help bug
       new  5361b0b   debian/upstream: Moved DOI and PMID to the Reference namespace.
       new  910687a   Corrected the files that did not validate with YAML::XS.
       new  944c353   Enhances citation data
       new  0367f89   Fix Vcs fields globally in all remaining packages because I'm bored by warnings in logfiles when investigating machine readable files of not yet uploaded packages
       new  8cf387a   Update French Debconf translation
       new  0728d05   fix purge files left
       new  b99fa88   use debian.org address
       new  b978fed   Clean all generated data for purge
       new  38a0229   prepare for upload
       new  1806dff   update Standards Version
       new  09bbd8f   Apply Ubuntu patch to use default java runtime
       new  b5fbc3b   fix copyright URL for policy compliance
       new  3047622   fix conffile update, use template file
       new  23dc1c5   remove configure script
       new  87b1838   switch to standards 3.9.4
       new  9cfa7f2   Add patch to prevent shipped file update by program
       new  e2b5c15   upload new fix
       new  b0c30ba   Fix permissions on global.properties, containing sensitive data
       new  6ab75ef   New upstream release
       new  44f8165   fix perms on sql files
       new  f030907   add patches to fix API changed in jgoodies-form
       new  5336d0d   fix typo in changelog
       new  1ed760a   upload 1.2.1-2
       new  2d9839e   add patch to fix ant api change and increase required ant version
       new  010ac4b   upload patched release
       new  aa35634   new usptream release 1.2.2
       new  73383de   fix anonscm headers
       new  d2581c8   fix noninteractive install
       new  39dd0fb   new upstream release 1.2.3
       new  f01211c   fix browse url
       new  da7dfcb   fix for non interactive mode
       new  dd03e9c   update dependency on mysql
       new  9f47a26   Move debian/upstream to debian/upstream/metadata
       new  5ad5b28   Refreshed the package
       new  cabeb0d   Wrap and sort
       new  6bdcd2d   Replaced the dependency on libgnumail-java with libmail-java
       new  f90dd9d   Upload to unstable
       new  8ebe9e0   replace libcommons-net2-java by libcommons-net-java for Debian deprecation
       new  13e21af   upload 1.2.3-5
       new  9dee689   use libhttpclient-java to replace libcommons-httpclient-java
       new  1169b16   Replaced the dependency on libcommons-net2-java with libcommons-net-java on the binary package
       new  336c1ff   Replace dependency libsaxonb-java with libsaxonhe-java
       new  95965c5   use libcommons-net-java dep to fix #800767 removal
       new  531a52b   fix bug 826903
       new  9b31fb3   add portuguese Brazilian translation
       new  464c374   patch to use libjgoodies-form-java >= 1.6 for migration to a more recent release of this lib
       new  62571c3   upload patch release to match new libjgoodies-forms-java, not compatible with older versions
       new  57a4b02   update patch info
       new  7c285a9   cme fix dpkg-control
       new  9d29525   debhelper 10
       new  fccfb69   s/mysql-server/default-mysql-server | virtual-mysql-server/
       new  00ddfc6   s/mysql-client/default-mysql-client | virtual-mysql-client/
       new  45b37d7   New upstream version 1.2.3
       new  261b465   Updated version 1.2.3 from 'upstream/1.2.3'
       new  102144f   Moved packaging from SVN to Git
       new  22d6de0   Standards-Version: 4.1.0 (no changes needed)

The 146 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


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