[med-svn] [staden-io-lib] 01/04: Fix FTBFS on big endian: error: invalid operands to binary

[Andreas Tille]

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tille pushed a commit to branch master
in repository staden-io-lib.

commit 7322bbf948bca357b3b26018026ca00126e974a9
Author: Andreas Tille <tille at debian.org>
Date:   Thu Sep 28 16:12:17 2017 +0200

    Fix FTBFS on big endian: error: invalid operands to binary
---
 debian/changelog                                   |  8 +++++++
 .../0001-Bug-fix-bgzip-on-Big-Endian-systems.patch | 28 ++++++++++++++++++++++
 debian/patches/series                              |  1 +
 3 files changed, 37 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index f293230..e6d9c8e 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+staden-io-lib (1.14.9-3) UNRELEASED; urgency=medium
+
+  * Fix FTBFS on big endian: error: invalid operands to binary
+    (Thanks to James Bonfield and Christian Seiler)
+    Closes: #876839
+
+ -- Andreas Tille <tille at debian.org>  Thu, 28 Sep 2017 16:10:01 +0200
+
 staden-io-lib (1.14.9-2) unstable; urgency=medium
 
   * Update copyright
diff --git a/debian/patches/0001-Bug-fix-bgzip-on-Big-Endian-systems.patch b/debian/patches/0001-Bug-fix-bgzip-on-Big-Endian-systems.patch
new file mode 100644
index 0000000..d5204f1
--- /dev/null
+++ b/debian/patches/0001-Bug-fix-bgzip-on-Big-Endian-systems.patch
@@ -0,0 +1,28 @@
+From: James Bonfield <jkb at sanger.ac.uk>
+Date: Thu, 28 Sep 2017 09:50:12 +0100
+Bug-Debian: 
+Origin: upstream
+Subject: Bug fix bgzip on Big Endian systems.
+
+--- a/io_lib/bgzip.c
++++ b/io_lib/bgzip.c
+@@ -186,13 +186,15 @@ int gzi_index_dump(gzi *idx, const char
+ 	free(tmp);
+ 
+     int i;
+-    uint64_t n = idx->n;
+-    if (fwrite(le_int8(&n), sizeof(n), 1, idx_f) != 1)
++    uint64_t n = le_int8(idx->n);
++    if (fwrite(&n, sizeof(n), 1, idx_f) != 1)
+ 	goto fail;
+     for (i=0; i<idx->n; i++) {
+-	if (fwrite(le_int8(&idx->c_off[i]), sizeof idx->c_off[i], 1, idx_f) != 1)
++	n = le_int8(idx->c_off[i]);
++	if (fwrite(&n, sizeof idx->c_off[i], 1, idx_f) != 1)
+ 	    goto fail;
+-	if (fwrite(le_int8(&idx->u_off[i]), sizeof idx->u_off[i], 1, idx_f) != 1)
++	n = le_int8(idx->u_off[i]);
++	if (fwrite(&n, sizeof idx->u_off[i], 1, idx_f) != 1)
+ 	    goto fail;
+     }
+ 
diff --git a/debian/patches/series b/debian/patches/series
index 730b42e..710ecaa 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1 +1,2 @@
 pathmax.patch
+0001-Bug-fix-bgzip-on-Big-Endian-systems.patch

-- 
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