[med-svn] [r-cran-vioplot] 01/10: Vioplots - providing violin plots

Andreas Tille tille at debian.org
Fri Sep 29 21:00:44 UTC 2017 

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r-cran-vioplot.

commit 7c58b1e628dc25c1ae6a646273602f71855c37cf
Author: Steffen Moeller <moeller at debian.org>
Date:   Mon Sep 15 12:20:48 2014 +0000

    Vioplots - providing violin plots
    
    The package seeks a maintainer for its upload. It was last
    updated in 2005, so not too much effort is expected.
    
    W: r-cran-vioplot: new-package-should-close-itp-bug
    W: r-cran-vioplot: extra-license-file usr/lib/R/site-library/vioplot/LICENSE
---
 debian/README.test       |  5 +++++
 debian/changelog         |  5 +++++
 debian/compat            |  1 +
 debian/control           | 19 +++++++++++++++++++
 debian/copyright         | 37 +++++++++++++++++++++++++++++++++++++
 debian/docs              |  0
 debian/rules             | 12 ++++++++++++
 debian/source/format     |  1 +
 debian/upstream/metadata | 15 +++++++++++++++
 debian/watch             |  3 +++
 10 files changed, 98 insertions(+)

diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..31258d3
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,5 @@
+Notes on how this package can be tested.
+========================================
+
+This package can be tested by loading it into R with the command
+'library(vioplot)' in order to confirm its integrity.
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..7a00346
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-cran-vioplot (0.2-1) UNRELEASED; urgency=low
+
+  * Initial release.
+
+ -- Steffen Moeller <moeller at debian.org>  Mon, 15 Sep 2014 13:57:49 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..b0f844e
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,19 @@
+Source: r-cran-vioplot
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev (>= 3.0)
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-vioplot/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-vioplot/trunk/
+Homepage: http://cran.r-project.org/web/packages/vioplot/index.html
+
+Package: r-cran-vioplot
+Architecture: all
+Depends: ${R:Depends},
+         ${shlib:Depends}
+Description: GNU R toolbox for violin plots
+ A violin plot is a combination of a box plot and a kernel density plot.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..4ded845
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,37 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: vioplot
+Upstream-Contact: Daniel Adler  <adler at uni-goettingen.de>
+Source: http://cran.r-project.org/web/packages/vioplot/index.html
+
+Files: *
+Copyright: © 20065 Daniel Adler  <adler at uni-goettingen.de>
+License: BSD-3-Clause
+
+Files: debian/*
+Copyright: 2014 Steffen Moeller <moeller at debian.org>
+License: BSD-3-Clause
+
+License: BSD-3-Clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ 1. Redistributions of source code must retain the above copyright
+    notice, this list of conditions and the following disclaimer.
+ 2. Redistributions in binary form must reproduce the above copyright
+    notice, this list of conditions and the following disclaimer in the
+    documentation and/or other materials provided with the distribution.
+ 3. Neither the name of the University nor the names of its contributors
+    may be used to endorse or promote products derived from this software
+    without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT 
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR 
+ A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE HOLDERS OR
+ CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, 
+ EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, 
+ PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR 
+ PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF 
+ LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING 
+ NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..e69de29
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..b771357
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,12 @@
+#!/usr/bin/make -f
+
+export DEB_BUILD_HARDENING=1
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+debRreposname=cran
+include /usr/share/R/debian/r-cran.mk
+
+clean::
+	find . -name "*.pdf" -o -name "*.tex" -o -name "*-eps" -o -name "*.log" -o -name "*.ps" -o -name "*.txt" | xargs -r chmod -x
+
+get-orig-source:
+	uscan --verbose --force-download --repack --compression xz
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..3da110f
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,15 @@
+Contact: Andrzej Oles <andrzej.oles at embl.de> 
+Name: EBImage
+Reference:
+ article: Pau20100201
+ author: Grégoire Pau and Florian Fuchs and Oleg Sklyar and Michael Boutros and Wolfgang Huber
+ title: EBImage.an R package for image processing with applications to cellular phenotypes
+ journal: Bioinformatics
+ volume: 26
+ number: 7
+ pages: 979-981
+ doi: 10.1093/bioinformatics/btq046
+ PMID: 20338898
+ year: 2010
+ URL: http://bioinformatics.oxfordjournals.org/content/26/7/979.full
+ eprint: http://bioinformatics.oxfordjournals.org/content/26/7/979.full.pdf+html
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..5df2747
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/vioplot_([-0-9\.]*)\.tar\.gz
+

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-cran-vioplot.git

More information about the debian-med-commit mailing list