[med-svn] [r-cran-rentrez] 01/05: Inject r-cran-rentrez
Andreas Tille
tille at debian.org
Sat Sep 30 08:37:58 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-rentrez.
commit 00410c868488ac8f11440f8bbf154c743f62efa2
Author: Andreas Tille <tille at debian.org>
Date: Sun Nov 13 20:50:24 2016 +0000
Inject r-cran-rentrez
---
debian/README.test | 8 ++++++++
debian/changelog | 5 +++++
debian/compat | 1 +
debian/control | 26 ++++++++++++++++++++++++++
debian/copyright | 32 ++++++++++++++++++++++++++++++++
debian/docs | 3 +++
debian/rules | 5 +++++
debian/source/format | 1 +
debian/tests/control | 3 +++
debian/tests/run-unit-test | 13 +++++++++++++
debian/watch | 2 ++
11 files changed, 99 insertions(+)
diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..55a9142
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you can do
+
+ sh run-unit-test
+
+in this directory.
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..1e9e65b
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-cran-rentrez (1.0.4-1) UNRELEASED; urgency=medium
+
+ * Initial release (closes: #xxxxxx)
+
+ -- Andreas Tille <tille at debian.org> Sun, 13 Nov 2016 21:23:17 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..04dcdc4
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,26 @@
+Source: r-cran-rentrez
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ dh-r,
+ r-base-dev,
+ r-cran-xml,
+ r-cran-httr,
+ r-cran-jsonlite
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-rentrez/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-rentrez/trunk/
+Homepage: https://cran.r-project.org/package=rentrez
+
+Package: r-cran-rentrez
+Architecture: all
+Depends: ${R:Depends},
+ ${misc:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
+Description: GNU R interface to the NCBI's EUtils API
+ Provides an R interface to the NCBI's EUtils API allowing users to
+ search databases like GenBank and PubMed, process the results of those
+ searches and pull data into their R sessions.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..198ef62
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,32 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: rentrez
+Upstream-Contact: David Winter <david.winter at gmail.com>
+Source: https://cran.r-project.org/package=rentrez
+
+Files: *
+Copyright: 2012-2016 David Winter, Scott Chamberlain, Han Guangchun
+License: MIT
+
+Files: debian/*
+Copyright: 2016 Andreas Tille <tille at debian.org>
+License: MIT
+
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining
+ a copy of this software and associated documentation files (the
+ "Software"), to deal in the Software without restriction, including
+ without limitation the rights to use, copy, modify, merge, publish,
+ distribute, sublicense, and/or sell copies of the Software, and to
+ permit persons to whom the Software is furnished to do so, subject to
+ the following conditions:
+ .
+ The above copyright notice and this permission notice shall be
+ included in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+ LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+ OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+ WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..960011c
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,3 @@
+tests
+debian/README.test
+debian/tests/run-unit-test
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..529c38a
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,5 @@
+#!/usr/bin/make -f
+
+%:
+ dh $@ --buildsystem R
+
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..b044b0c
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-testthat
+Restrictions: allow-stderr
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
new file mode 100644
index 0000000..79b98d7
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,13 @@
+#!/bin/sh -e
+
+oname=rentrez
+pkg=r-cran-`echo $oname | tr '[A-Z]' '[a-z]'`
+
+if [ "$ADTTMP" = "" ] ; then
+ ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+ trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
+fi
+cd $ADTTMP
+cp -a /usr/share/doc/${pkg}/tests/* $ADTTMP
+find . -name "*.gz" -exec gunzip \{\} \;
+LC_ALL=C R --no-save < test-all.R
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..af7ceec
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=4
+https://cran.r-project.org/src/contrib/rentrez_([-\d.]*)\.tar\.gz
--
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