[med-svn] [Git][med-team/libsmithwaterman][master] 10 commits: use mode=git (remove debian/get-orig-source)
Andreas Tille
gitlab at salsa.debian.org
Wed Apr 11 13:53:31 BST 2018
Andreas Tille pushed to branch master at Debian Med / libsmithwaterman
Commits:
d07642ca by Andreas Tille at 2018-04-11T14:37:08+02:00
use mode=git (remove debian/get-orig-source)
- - - - -
08bd2f1f by Andreas Tille at 2018-04-11T14:38:52+02:00
New upstream version 0.0+git20160702.2610e25
- - - - -
b5c41fac by Andreas Tille at 2018-04-11T14:38:52+02:00
Update upstream source from tag 'upstream/0.0+git20160702.2610e25'
Update to upstream version '0.0+git20160702.2610e25'
with Debian dir 1cf4d282428dadd6bd8a38bc06df987d911c5352
- - - - -
cacaaf89 by Andreas Tille at 2018-04-11T14:39:09+02:00
Standards-Version: 4.1.4
- - - - -
12955353 by Andreas Tille at 2018-04-11T14:39:12+02:00
Point Vcs fields to salsa.debian.org
- - - - -
c6e6064e by Andreas Tille at 2018-04-11T14:42:05+02:00
do not parse changelog
- - - - -
c608da5c by Andreas Tille at 2018-04-11T14:43:06+02:00
debhelper 11
- - - - -
18ff8575 by Andreas Tille at 2018-04-11T14:43:48+02:00
hardening=+all
- - - - -
489270b5 by Andreas Tille at 2018-04-11T14:47:18+02:00
Add symbols file
- - - - -
606acdc9 by Andreas Tille at 2018-04-11T14:52:23+02:00
Disable parallel builds, upload to unstable
- - - - -
8 changed files:
- debian/changelog
- debian/compat
- debian/control
- debian/copyright
- − debian/get-orig-source
- + debian/libsmithwaterman0.symbols
- debian/rules
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,15 @@
+libsmithwaterman (0.0+git20160702.2610e25-1) unstable; urgency=medium
+
+ * d/watch: use mode=git (remove debian/get-orig-source)
+ * Standards-Version: 4.1.4
+ * Point Vcs fields to salsa.debian.org
+ * d/rules: do not parse changelog
+ * debhelper 11
+ * hardening=+all
+ * Add symbols file
+
+ -- Andreas Tille <tille at debian.org> Wed, 11 Apr 2018 14:47:20 +0200
+
libsmithwaterman (0.0+20160702-3) unstable; urgency=medium
* Team upload.
=====================================
debian/compat
=====================================
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-9
+11
=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -3,13 +3,12 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 9),
- dh-autoreconf,
+Build-Depends: debhelper (>= 11~),
d-shlibs,
libdisorder-dev
-Standards-Version: 4.0.0
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/libsmithwaterman.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/libsmithwaterman.git
+Standards-Version: 4.1.4
+Vcs-Browser: https://salsa.debian.org/med-team/libsmithwaterman
+Vcs-Git: https://salsa.debian.org/med-team/libsmithwaterman.git
Homepage: https://github.com/ekg/smithwaterman
Package: libsmithwaterman0
=====================================
debian/copyright
=====================================
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,6 +1,8 @@
Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: smithwaterman
Source: https://github.com/ekg/smithwaterman
+Files-Excluded: *disorder*
+ .git*
Files: *
Copyright: 2000-2016 Erik Garrison <erik.garrison at gmail.com>
=====================================
debian/get-orig-source deleted
=====================================
--- a/debian/get-orig-source
+++ /dev/null
@@ -1,26 +0,0 @@
-#!/bin/sh -e
-
-COMPRESS=xz
-
-NAME=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
-ORIGNAME=`echo $NAME | sed 's/^lib//'`
-MVERSION=`dpkg-parsechangelog | awk '/^Version:/ { print $2 }' | sed 's/^\([0-9\.]\+\)[+~][-0-9]\+$/\1/'`
-
-mkdir -p ../tarballs
-cd ../tarballs
-# need to clean up the tarballs dir first because upstream tarball might
-# contain a directory with unpredictable name
-rm -rf *
-git clone --quiet https://github.com/ekg/smithwaterman
-cd $ORIGNAME
-VERSION=${MVERSION}+`date -d @$(git show --format="%at" | head -n1) +%Y%m%d`
-# for esthetical reasons set file timestamps (if git-restore-mtime is installed)
-git restore-mtime || true
-cd ..
-TARDIR=${NAME}-${VERSION}
-mv ${ORIGNAME} ${TARDIR}
-rm -rf ${TARDIR}/.git*
-rm -rf ${TARDIR}/*disorder*
-
-GZIP="--best --no-name" tar --owner=root --group=root --mode=a+rX -caf "$NAME"_"$VERSION".orig.tar.${COMPRESS} "${TARDIR}"
-rm -rf ${TARDIR}
=====================================
debian/libsmithwaterman0.symbols
=====================================
--- /dev/null
+++ b/debian/libsmithwaterman0.symbols
@@ -0,0 +1,77 @@
+libsmithwaterman.so.0 libsmithwaterman0 #MINVER#
+ _Z10mergeCIGARRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ at Base 0.0+git20160702.2610e25
+ _Z10splitCIGARRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.2610e25
+ _Z11homopolymerNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.2610e25
+ _Z12isRepeatUnitRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ at Base 0.0+git20160702.2610e25
+ _Z12repeatCountslRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi at Base 0.0+git20160702.2610e25
+ _Z15countMismatchesRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_S4_ at Base 0.0+git20160702.2610e25
+ _Z15stablyLeftAlignNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERS4_S4_Riib at Base 0.0+git20160702.2610e25
+ _Z9joinCIGARRKSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE at Base 0.0+git20160702.2610e25
+ _Z9leftAlignRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_S5_Rib at Base 0.0+git20160702.2610e25
+ _ZN11IndelAllele10readLengthEv at Base 0.0+git20160702.2610e25
+ _ZN11IndelAllele11homopolymerEv at Base 0.0+git20160702.2610e25
+ _ZN11IndelAllele15referenceLengthEv at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotoh13Directions_UPE at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotoh15Directions_LEFTE at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotoh15Directions_STOPE at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotoh15repeat_size_maxE at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotoh19CreateScoringMatrixEv at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotoh19Directions_DIAGONALE at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotoh23EnableEntropyGapPenaltyEf at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotoh23FLOAT_NEGATIVE_INFINITYE at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotoh26CorrectHomopolymerGapOrderEjj at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotoh27EnableHomoPolymerGapPenaltyEf at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotoh31EnableRepeatGapExtensionPenaltyEff at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotoh5AlignERjRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKS6_S9_ at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotohC1Effff at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotohC2Effff at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotohD1Ev at Base 0.0+git20160702.2610e25
+ _ZN19CSmithWatermanGotohD2Ev at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman13Directions_UPE at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman14CalculateScoreERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_jjRfjj at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman15Directions_LEFTE at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman15Directions_STOPE at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman17Position_REF_ZEROE at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman19CreateScoringMatrixEv at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman19Directions_DIAGONALE at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman19Position_QUERY_ZEROE at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman20ReinitializeMatricesERKhRKjS3_St4pairIS4_IjjES5_E at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman23FLOAT_NEGATIVE_INFINITYE at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman26CorrectHomopolymerGapOrderEjj at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman27EnableHomoPolymerGapPenaltyEf at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman27Position_REF_AND_QUERY_ZEROE at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman30Position_REF_AND_QUERO_NONZEROE at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman5AlignERjRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKS6_S9_RSt4pairISA_IjjESB_E at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWaterman9TracebackERjRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKS6_S9_jjjj at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWatermanC1Effffj at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWatermanC2Effffj at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWatermanD1Ev at Base 0.0+git20160702.2610e25
+ _ZN20CBandedSmithWatermanD2Ev at Base 0.0+git20160702.2610e25
+ _ZNKSt5ctypeIcE8do_widenEc at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorI11IndelAlleleSaIS0_EE12emplace_backIJS0_EEEvDpOT_ at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_ at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_ at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorI11IndelAlleleSaIS0_EED1Ev at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorI11IndelAlleleSaIS0_EED2Ev at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE12emplace_backIJSD_EEEvDpOT_ at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EE17_M_realloc_insertIJSD_EEEvN9__gnu_cxx17__normal_iteratorIPSD_SF_EEDpOT_ at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EED1Ev at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4lessIS6_ESaISt4pairIKS6_iEEESaISD_EED2Ev at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE12emplace_backIJS7_EEEvDpOT_ at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE17_M_realloc_insertIJRKS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_ at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EE17_M_realloc_insertIJS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_ at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EED1Ev at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorISt4pairIiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESaIS7_EED2Ev at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorIfSaIfEE12emplace_backIJfEEEvDpOT_ at Base 0.0+git20160702.2610e25
+ _ZNSt6vectorIfSaIfEE17_M_realloc_insertIJfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_ at Base 0.0+git20160702.2610e25
+ _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev at Base 0.0+git20160702.2610e25
+ _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev at Base 0.0+git20160702.2610e25
+ _ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev at Base 0.0+git20160702.2610e25
+ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE12_M_erase_auxESt23_Rb_tree_const_iteratorIS8_E at Base 0.0+git20160702.2610e25
+ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_ at Base 0.0+git20160702.2610e25
+ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_ at Base 0.0+git20160702.2610e25
+ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E at Base 0.0+git20160702.2610e25
+ _ZeqRK11IndelAlleleS1_ at Base 0.0+git20160702.2610e25
+ _ZlsRSoRK11IndelAllele at Base 0.0+git20160702.2610e25
+ _ZltRK11IndelAlleleS1_ at Base 0.0+git20160702.2610e25
+ _ZneRK11IndelAlleleS1_ at Base 0.0+git20160702.2610e25
=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -2,13 +2,10 @@
# DH_VERBOSE := 1
-DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
-
-# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
-export DEB_BUILD_MAINT_OPTIONS = hardening=+bindnow
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
%:
- dh $@ --with autoreconf
+ dh $@ --no-parallel
override_dh_install:
dh_install
@@ -18,7 +15,4 @@ override_dh_install:
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig \
- debian/tmp/usr/lib/*/$(DEBPKGNAME).so
-
-get-orig-source:
- . debian/get-orig-source
+ debian/tmp/usr/lib/*/*.so
=====================================
debian/watch
=====================================
--- a/debian/watch
+++ b/debian/watch
@@ -1,4 +1,4 @@
version=4
-opts="mode=git,uversionmangle=s/^/0.0+/" \
+opts="mode=git,pretty=0.0+git%cd.%h" \
https://github.com/ekg/smithwaterman.git HEAD
View it on GitLab: https://salsa.debian.org/med-team/libsmithwaterman/compare/dfe0d8db7088b627014340b7953c873774084390...606acdc9cc0c20046690d9e53cc8d7f3ac23fe4c
---
View it on GitLab: https://salsa.debian.org/med-team/libsmithwaterman/compare/dfe0d8db7088b627014340b7953c873774084390...606acdc9cc0c20046690d9e53cc8d7f3ac23fe4c
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.alioth.debian.org/pipermail/debian-med-commit/attachments/20180411/fdc6573f/attachment-0001.html>
More information about the debian-med-commit
mailing list