[med-svn] [Git][med-team/freebayes][master] 5 commits: New upstream version 1.2.0

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / freebayes


Commits:
92a5438a by Andreas Tille at 2018-04-26T15:30:40+02:00
New upstream version 1.2.0
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36c8ca5b by Andreas Tille at 2018-04-26T15:30:48+02:00
Update upstream source from tag 'upstream/1.2.0'

Update to upstream version '1.2.0'
with Debian dir 727e85e14ee6dd41cf823526bda1e03e0b1c4090
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fe7dfdee by Andreas Tille at 2018-04-26T15:30:48+02:00
New upstream version

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e28b6645 by Andreas Tille at 2018-04-26T15:30:55+02:00
Point Vcs fields to salsa.debian.org

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69e916e4 by Andreas Tille at 2018-04-26T15:30:56+02:00
Standards-Version: 4.1.4

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30 changed files:

- Makefile
- README.md
- debian/changelog
- debian/control
- paper/main.blg
- src/Allele.cpp
- src/Allele.h
- src/AlleleParser.cpp
- src/AlleleParser.h
- src/CNV.cpp
- src/CNV.h
- src/DataLikelihood.cpp
- src/DataLikelihood.h
- src/Fasta.cpp
- src/LargeFileSupport.h
- src/LeftAlign.h
- + src/Logging.h
- src/Makefile
- + src/Makefile.bamtools
- src/Parameters.cpp
- src/Sample.cpp
- src/Sample.h
- src/SegfaultHandler.cpp
- src/SegfaultHandler.h
- src/alleles.cpp
- src/bamleftalign.cpp
- src/freebayes.cpp
- test/t/00_region_and_target_handling.t
- test/t/01_call_variants.t
- test/t/02_multi_bam.t


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/freebayes/compare/a0c0b33a25580f0adcc9bcd3eae50469140ef800...69e916e4710cb2950c2d3b4921f2e43be0d5ec06

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View it on GitLab: https://salsa.debian.org/med-team/freebayes/compare/a0c0b33a25580f0adcc9bcd3eae50469140ef800...69e916e4710cb2950c2d3b4921f2e43be0d5ec06
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