[med-svn] [Git][med-team/pilon][master] Fix packaging - thanks again to Markus Koschany

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / pilon


Commits:
e666094d by Andreas Tille at 2018-08-03T06:07:47Z
Fix packaging - thanks again to Markus Koschany

- - - - -


3 changed files:

- debian/control
- debian/manifest
- debian/rules


Changes:

=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -7,7 +7,7 @@ Build-Depends: debhelper (>= 11~),
                javahelper,
                scala,
                libhtsjdk-java
-Standards-Version: 4.1.4
+Standards-Version: 4.2.0
 Vcs-Browser: https://salsa.debian.org/med-team/pilon
 Vcs-Git: https://salsa.debian.org/med-team/pilon.git
 Homepage: https://github.com/broadinstitute/pilon/wiki
@@ -15,7 +15,8 @@ Homepage: https://github.com/broadinstitute/pilon/wiki
 Package: pilon
 Architecture: all
 Depends: ${misc:Depends},
-         libhtsjdk-java
+         libhtsjdk-java,
+         libcommons-lang-java
 Conflicts: pilon-non-free
 Replaces: pilon-non-free
 Description: automated genome assembly improvement and variant detection tool


=====================================
debian/manifest
=====================================
--- a/debian/manifest
+++ b/debian/manifest
@@ -1,4 +1,4 @@
 usr/share/java/pilon.jar:
     Main-Class: org.broadinstitute.pilon.Pilon
     Manifest-Version: 1.0
-    Class-Path: /usr/share/java/htsjdk.jar
+    Class-Path: /usr/share/java/htsjdk.jar /usr/share/java/scala-library.jar /usr/share/java/commons-lang.jar


=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -8,3 +8,6 @@ export LC_ALL=C.UTF-8
 
 override_dh_auto_build:
 	scalac -classpath /usr/share/java/htsjdk.jar -d pilon.jar src/main/scala/org/broadinstitute/pilon/*
+
+override_jh_depends:
+	# do nothing here



View it on GitLab: https://salsa.debian.org/med-team/pilon/commit/e666094d03e0f3011551fa4adbd20b1b212f6f9e

-- 
View it on GitLab: https://salsa.debian.org/med-team/pilon/commit/e666094d03e0f3011551fa4adbd20b1b212f6f9e
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