[med-svn] [Git][med-team/artemis][master] 2 commits: Restricted set of tests
Andreas Tille
gitlab at salsa.debian.org
Mon Aug 6 09:35:54 BST 2018
Andreas Tille pushed to branch master at Debian Med / artemis
Commits:
b6834336 by Andreas Tille at 2018-08-05T15:36:29Z
Restricted set of tests
- - - - -
35bedc44 by Andreas Tille at 2018-08-06T07:56:45Z
Fix names, fix patch
- - - - -
6 changed files:
- debian/artemis.install
- debian/artemis.links
- debian/artemis.manifest.in
- debian/patches/jar-rules.patch
- debian/patches/series
- debian/rules
Changes:
=====================================
debian/artemis.install
=====================================
--- a/debian/artemis.install
+++ b/debian/artemis.install
@@ -1,6 +1,6 @@
jar_build/artemis.jar usr/share/java/
jar_build/act.jar usr/share/java/
-jar_build/BamView.jar usr/share/java/
+jar_build/bamview.jar usr/share/java/
jar_build/DNAPlotter.jar usr/share/java/
-debian/desktop/*.desktop usr/share/applications/
+debian/desktop/*.desktop usr/share/applications/
images/helix.png usr/share/icons/hicolor/96x96/apps/
=====================================
debian/artemis.links
=====================================
--- a/debian/artemis.links
+++ b/debian/artemis.links
@@ -1,4 +1,4 @@
usr/share/java/artemis.jar usr/bin/art
usr/share/java/act.jar usr/bin/act
usr/share/java/DNAPlotter.jar usr/bin/dnaplotter
-usr/share/java/BamView.jar usr/bin/bamview
+usr/share/java/bamview.jar usr/bin/bamview
=====================================
debian/artemis.manifest.in
=====================================
--- a/debian/artemis.manifest.in
+++ b/debian/artemis.manifest.in
@@ -6,7 +6,7 @@
Class-Path: @CLASSPATH@
Main-Class: uk.ac.sanger.artemis.components.ActMain
Permissions: all-permissions
-/usr/share/java/BamView.jar:
+/usr/share/java/bamview.jar:
Class-Path: @CLASSPATH@
Main-Class: uk.ac.sanger.artemis.components.alignment.BamView
Permissions: all-permissions
=====================================
debian/patches/jar-rules.patch
=====================================
--- a/debian/patches/jar-rules.patch
+++ b/debian/patches/jar-rules.patch
@@ -50,7 +50,7 @@ Last-Update: Sun, 05 Aug 2018 07:16:40 +0200
echo "Main-Class: uk.ac.sanger.artemis.circular.DNADraw\nPermissions: all-permissions" > manifest-circular; \
jar cmf manifest-circular ../DNAPlotter.jar images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg README.md etc \
- org uk com net htsjdk picard gov joptsimple ngs freemarker LICENSE.Apache LICENSE.Picard LICENSE.JDBC LICENSE j2ssh.properties; \
-+ org uk joptsimple ngs freemarker ; \
++ org uk ; \
echo "Main-Class: uk.ac.sanger.artemis.components.alignment.BamView\nPermissions: all-permissions" > manifest-bamview; \
- jar cmf manifest-bamview ../bamview.jar META-INF/services etc org uk com net htsjdk picard gov joptsimple ngs freemarker LICENSE.Apache LICENSE.Picard LICENSE.JDBC LICENSE; \
+ jar cmf manifest-bamview ../bamview.jar etc org uk ; \
=====================================
debian/patches/series
=====================================
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -3,3 +3,4 @@ jar-rules.patch
test-classpath.patch
samreader.patch
use-lang3.patch
+fix-test.patch
=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -44,7 +44,7 @@ override_dh_auto_build:
convert images/helix.gif -resize 96x96\! images/helix.png
override_dh_auto_test:
- cd test && ant -f build-test.xml -DEMBOSS_ROOT=/usr
+ cd test && ant -f build-test.xml run-manual-tests-headless -DEMBOSS_ROOT=/usr
override_dh_auto_clean:
dh_auto_clean
View it on GitLab: https://salsa.debian.org/med-team/artemis/compare/551ab850a0023d1cc4ffba2839d2b3fe3b21dbe8...35bedc44b0e44b8dd79b01a8f20dcc3a2f4cfeef
--
View it on GitLab: https://salsa.debian.org/med-team/artemis/compare/551ab850a0023d1cc4ffba2839d2b3fe3b21dbe8...35bedc44b0e44b8dd79b01a8f20dcc3a2f4cfeef
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