[med-svn] [Git][med-team/pbsuite][master] 4 commits: debhelper 11

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / pbsuite


Commits:
22c59995 by Andreas Tille at 2018-08-17T14:15:22Z
debhelper 11

- - - - -
17db5485 by Andreas Tille at 2018-08-17T14:17:03Z
Point Vcs fields to salsa.debian.org

- - - - -
231d3d2e by Andreas Tille at 2018-08-17T14:17:04Z
Standards-Version: 4.2.0

- - - - -
d3557a90 by Andreas Tille at 2018-08-17T14:20:46Z
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/compat
- debian/control


Changes:

=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,12 @@
+pbsuite (15.8.24+dfsg-3) unstable; urgency=medium
+
+  * Team upload.
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.0
+
+ -- Andreas Tille <tille at debian.org>  Fri, 17 Aug 2018 16:17:04 +0200
+
 pbsuite (15.8.24+dfsg-2) unstable; urgency=medium
 
   * Update pbsuite for compatibility with blasr 5 (Closes: #844034)


=====================================
debian/compat
=====================================
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-9
+11


=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -1,25 +1,22 @@
 Source: pbsuite
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Afif Elghraoui <afif at debian.org>
 Section: science
 Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders:
-	Afif Elghraoui <afif at debian.org>
-Build-Depends:
-	debhelper (>= 9),
-	dh-python,
-	python-all,
-Standards-Version: 3.9.8
+Build-Depends: debhelper (>= 11~),
+               dh-python,
+               python-all
+Standards-Version: 4.2.0
+Vcs-Browser: https://salsa.debian.org/med-team/pbsuite
+Vcs-Git: https://salsa.debian.org/med-team/pbsuite.git
 Homepage: http://sourceforge.net/projects/pb-jelly
-Vcs-Git: https://anonscm.debian.org/git/debian-med/pbsuite.git
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pbsuite.git
 
 Package: pbsuite
-Section: metapackages
 Architecture: all
-Depends:
-	${misc:Depends},
-	pbjelly,
-	pbhoney,
+Section: metapackages
+Depends: ${misc:Depends},
+         pbjelly,
+         pbhoney
 Description: software for Pacific Biosciences sequencing data
  The PBSuite contains two projects created for analysis of
  Pacific Biosciences long-read sequencing data.
@@ -27,12 +24,11 @@ Description: software for Pacific Biosciences sequencing data
   * PBHoney - structural variation discovery
 
 Package: python-pbsuite-utils
-Section: python
 Architecture: all
-Depends:
-	${misc:Depends},
-	${python:Depends},
-	python-pysam (>= 0.8.0),
+Section: python
+Depends: ${misc:Depends},
+         ${python:Depends},
+         python-pysam (>= 0.8.0)
 Description: software for Pacific Biosciences sequencing data -- Python utilities
  The PBSuite currently contains two projects created and maintained
  by Adam English for analysis of Pacific Biosciences long-read
@@ -44,12 +40,11 @@ Description: software for Pacific Biosciences sequencing data -- Python utilitie
 
 Package: pbjelly
 Architecture: all
-Depends:
-	${misc:Depends},
-	${python:Depends},
-	python-pbsuite-utils (= ${source:Version}),
-	python-networkx,
-	blasr (>= 5.3),
+Depends: ${misc:Depends},
+         ${python:Depends},
+         python-pbsuite-utils (= ${source:Version}),
+         python-networkx,
+         blasr (>= 5.3)
 Description: genome assembly upgrading tool
  PBJelly is a highly automated pipeline that aligns long sequencing
  reads (such as PacBio RS reads or long 454 reads in fasta format)
@@ -60,20 +55,18 @@ Description: genome assembly upgrading tool
 
 Package: pbhoney
 Architecture: all
-Depends:
-	${misc:Depends},
-	${python:Depends},
-	python-pbsuite-utils (= ${source:Version}),
-	python-pbbanana (= ${source:Version}),
-	python-pysam (>= 0.8.0),
-	python-networkx,
-	python-h5py (>= 2.0.1),
-	python-numpy,
-	python-intervaltree-bio,
-	blasr (>= 5.3),
-	samtools,
-Recommends:
-	pbdagcon,
+Depends: ${misc:Depends},
+         ${python:Depends},
+         python-pbsuite-utils (= ${source:Version}),
+         python-pbbanana (= ${source:Version}),
+         python-pysam (>= 0.8.0),
+         python-networkx,
+         python-h5py,
+         python-numpy,
+         python-intervaltree-bio,
+         blasr (>= 5.3),
+         samtools
+Recommends: pbdagcon
 Description: genomic structural variation discovery
  PBHoney is an implementation of two variant-identification
  approaches designed to exploit the high mappability of long reads
@@ -84,15 +77,14 @@ Description: genomic structural variation discovery
  PBHoney is part of the PBSuite.
 
 Package: python-pbbanana
-Section: python
-Depends:
-	${misc:Depends},
-	${python:Depends},
-	python-pbsuite-utils (= ${source:Version}),
-	python-networkx,
-	pbjelly (= ${source:Version}),
-	blasr,
 Architecture: all
+Section: python
+Depends: ${misc:Depends},
+         ${python:Depends},
+         python-pbsuite-utils (= ${source:Version}),
+         python-networkx,
+         pbjelly (= ${source:Version}),
+         blasr
 Description: additional utilities for the pbsuite
  PBBanana contains some assembly and consensus utilities
  for the PBSuite.



View it on GitLab: https://salsa.debian.org/med-team/pbsuite/compare/e6b27a04f3e75d0b749f0e8eb91300b9fa3f33a1...d3557a908f508c8808f88a206ad7e179b67a2af9

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