[med-svn] [Git][med-team/libfastahack][master] 5 commits: Fix Makefile.am (thanks to Adrian Bunk for the patch)
Andreas Tille
gitlab at salsa.debian.org
Sat Aug 18 06:57:31 BST 2018
Andreas Tille pushed to branch master at Debian Med / libfastahack
Commits:
c72f4489 by Andreas Tille at 2018-08-18T05:45:28Z
Fix Makefile.am (thanks to Adrian Bunk for the patch)
- - - - -
f952d8a7 by Andreas Tille at 2018-08-18T05:46:28Z
Standards-Version: 4.2.0
- - - - -
5b1a00b1 by Andreas Tille at 2018-08-18T05:52:36Z
Drop --no-parallel
- - - - -
b4e10caf by Andreas Tille at 2018-08-18T05:53:53Z
drop +dfsg from symbols file
- - - - -
ebba5c12 by Andreas Tille at 2018-08-18T05:57:05Z
Upload to unstable
- - - - -
5 changed files:
- debian/changelog
- debian/control
- debian/libfastahack0.symbols
- debian/patches/autoconf.patch
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,16 @@
+libfastahack (0.0+git20160702.bbc645f+dfsg-2) unstable; urgency=medium
+
+ [ Adrian Bunk ]
+ * Fix Makefile.am
+ Closes: #906481
+
+ [ Andreas Tille ]
+ * Standards-Version: 4.2.0
+ * d/rules: Drop --no-parallel
+ * drop +dfsg from symbols file
+
+ -- Andreas Tille <tille at debian.org> Sat, 18 Aug 2018 07:54:07 +0200
+
libfastahack (0.0+git20160702.bbc645f+dfsg-1) unstable; urgency=medium
* d/watch: Use git mode
=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -6,7 +6,7 @@ Priority: optional
Build-Depends: debhelper (>= 11~),
d-shlibs,
libdisorder-dev
-Standards-Version: 4.1.5
+Standards-Version: 4.2.0
Vcs-Browser: https://salsa.debian.org/med-team/libfastahack
Vcs-Git: https://salsa.debian.org/med-team/libfastahack.git
Homepage: https://github.com/ekg/fastahack
=====================================
debian/libfastahack0.symbols
=====================================
--- a/debian/libfastahack0.symbols
+++ b/debian/libfastahack0.symbols
@@ -1,51 +1,51 @@
libfastahack.so.0 libfastahack0 #MINVER#
- _Z22fastaIndexEntryCompare15FastaIndexEntryS_ at Base 0.0+git20160702.bbc645f+dfsg
- _Z5splitRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ at Base 0.0+git20160702.bbc645f+dfsg
- _Z5splitRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_RSt6vectorIS4_SaIS4_EE at Base 0.0+git20160702.bbc645f+dfsg
- _Z5splitRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEc at Base 0.0+git20160702.bbc645f+dfsg
- _Z5splitRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcRSt6vectorIS4_SaIS4_EE at Base 0.0+git20160702.bbc645f+dfsg
- _ZN10FastaIndex13readIndexFileENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f+dfsg
- _ZN10FastaIndex14indexReferenceENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f+dfsg
- _ZN10FastaIndex14writeIndexFileENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f+dfsg
- _ZN10FastaIndex17flushEntryToIndexER15FastaIndexEntry at Base 0.0+git20160702.bbc645f+dfsg
- _ZN10FastaIndex18indexFileExtensionB5cxx11Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZN10FastaIndex5entryENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f+dfsg
- _ZN10FastaIndexC1Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZN10FastaIndexC2Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZN10FastaIndexD1Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZN10FastaIndexD2Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZN14FastaReference11getSequenceENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f+dfsg
- _ZN14FastaReference14getSubSequenceENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii at Base 0.0+git20160702.bbc645f+dfsg
- _ZN14FastaReference14sequenceLengthENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f+dfsg
- _ZN14FastaReference20getTargetSubSequenceB5cxx11ER11FastaRegion at Base 0.0+git20160702.bbc645f+dfsg
- _ZN14FastaReference24sequenceNameStartingWithENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f+dfsg
- _ZN14FastaReference4openENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f+dfsg
- _ZN14FastaReferenceD1Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZN14FastaReferenceD2Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZN15FastaIndexEntry5clearEv at Base 0.0+git20160702.bbc645f+dfsg
- _ZN15FastaIndexEntryC1ENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEixii at Base 0.0+git20160702.bbc645f+dfsg
- _ZN15FastaIndexEntryC1Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZN15FastaIndexEntryC2ENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEixii at Base 0.0+git20160702.bbc645f+dfsg
- _ZN15FastaIndexEntryC2Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZN15FastaIndexEntryD1Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZN15FastaIndexEntryD2Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZNKSt5ctypeIcE8do_widenEc at Base 0.0+git20160702.bbc645f+dfsg
- _ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED1Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED2Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_ at Base 0.0+git20160702.bbc645f+dfsg
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 0.0+git20160702.bbc645f+dfsg
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 0.0+git20160702.bbc645f+dfsg
- _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE16_M_insert_uniqueIS6_IS5_S8_EEES6_ISt17_Rb_tree_iteratorIS9_EbEOT_ at Base 0.0+git20160702.bbc645f+dfsg
- _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_ at Base 0.0+git20160702.bbc645f+dfsg
- _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_ at Base 0.0+git20160702.bbc645f+dfsg
- _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE8_M_eraseEPSt13_Rb_tree_nodeIS9_E at Base 0.0+git20160702.bbc645f+dfsg
- _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E at Base 0.0+git20160702.bbc645f+dfsg
- _ZSt11__push_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops14_Iter_comp_valIPFbS2_S2_EEEEvT_T0_SE_T1_RT2_ at Base 0.0+git20160702.bbc645f+dfsg
- _ZSt11__remove_ifIPcN9__gnu_cxx5__ops16_Iter_equals_valIKcEEET_S6_S6_T0_ at Base 0.0+git20160702.bbc645f+dfsg
- _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_T0_SE_T1_T2_ at Base 0.0+git20160702.bbc645f+dfsg
- _ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_ at Base 0.0+git20160702.bbc645f+dfsg
- _ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElNS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_T1_ at Base 0.0+git20160702.bbc645f+dfsg
- _ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_comp_iterIPFbS2_S2_EEEEvT_T0_ at Base 0.0+git20160702.bbc645f+dfsg
- _ZlsRSoR10FastaIndex at Base 0.0+git20160702.bbc645f+dfsg
- _ZlsRSoRK15FastaIndexEntry at Base 0.0+git20160702.bbc645f+dfsg
+ _Z22fastaIndexEntryCompare15FastaIndexEntryS_ at Base 0.0+git20160702.bbc645f
+ _Z5splitRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ at Base 0.0+git20160702.bbc645f
+ _Z5splitRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_RSt6vectorIS4_SaIS4_EE at Base 0.0+git20160702.bbc645f
+ _Z5splitRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEc at Base 0.0+git20160702.bbc645f
+ _Z5splitRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcRSt6vectorIS4_SaIS4_EE at Base 0.0+git20160702.bbc645f
+ _ZN10FastaIndex13readIndexFileENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f
+ _ZN10FastaIndex14indexReferenceENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f
+ _ZN10FastaIndex14writeIndexFileENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f
+ _ZN10FastaIndex17flushEntryToIndexER15FastaIndexEntry at Base 0.0+git20160702.bbc645f
+ _ZN10FastaIndex18indexFileExtensionB5cxx11Ev at Base 0.0+git20160702.bbc645f
+ _ZN10FastaIndex5entryENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f
+ _ZN10FastaIndexC1Ev at Base 0.0+git20160702.bbc645f
+ _ZN10FastaIndexC2Ev at Base 0.0+git20160702.bbc645f
+ _ZN10FastaIndexD1Ev at Base 0.0+git20160702.bbc645f
+ _ZN10FastaIndexD2Ev at Base 0.0+git20160702.bbc645f
+ _ZN14FastaReference11getSequenceENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f
+ _ZN14FastaReference14getSubSequenceENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii at Base 0.0+git20160702.bbc645f
+ _ZN14FastaReference14sequenceLengthENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f
+ _ZN14FastaReference20getTargetSubSequenceB5cxx11ER11FastaRegion at Base 0.0+git20160702.bbc645f
+ _ZN14FastaReference24sequenceNameStartingWithENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f
+ _ZN14FastaReference4openENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 0.0+git20160702.bbc645f
+ _ZN14FastaReferenceD1Ev at Base 0.0+git20160702.bbc645f
+ _ZN14FastaReferenceD2Ev at Base 0.0+git20160702.bbc645f
+ _ZN15FastaIndexEntry5clearEv at Base 0.0+git20160702.bbc645f
+ _ZN15FastaIndexEntryC1ENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEixii at Base 0.0+git20160702.bbc645f
+ _ZN15FastaIndexEntryC1Ev at Base 0.0+git20160702.bbc645f
+ _ZN15FastaIndexEntryC2ENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEixii at Base 0.0+git20160702.bbc645f
+ _ZN15FastaIndexEntryC2Ev at Base 0.0+git20160702.bbc645f
+ _ZN15FastaIndexEntryD1Ev at Base 0.0+git20160702.bbc645f
+ _ZN15FastaIndexEntryD2Ev at Base 0.0+git20160702.bbc645f
+ _ZNKSt5ctypeIcE8do_widenEc at Base 0.0+git20160702.bbc645f
+ _ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED1Ev at Base 0.0+git20160702.bbc645f
+ _ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED2Ev at Base 0.0+git20160702.bbc645f
+ _ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_ at Base 0.0+git20160702.bbc645f
+ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 0.0+git20160702.bbc645f
+ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 0.0+git20160702.bbc645f
+ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 0.0+git20160702.bbc645f
+ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE16_M_insert_uniqueIS6_IS5_S8_EEES6_ISt17_Rb_tree_iteratorIS9_EbEOT_ at Base 0.0+git20160702.bbc645f
+ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_ at Base 0.0+git20160702.bbc645f
+ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_ at Base 0.0+git20160702.bbc645f
+ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE8_M_eraseEPSt13_Rb_tree_nodeIS9_E at Base 0.0+git20160702.bbc645f
+ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E at Base 0.0+git20160702.bbc645f
+ _ZSt11__push_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops14_Iter_comp_valIPFbS2_S2_EEEEvT_T0_SE_T1_RT2_ at Base 0.0+git20160702.bbc645f
+ _ZSt11__remove_ifIPcN9__gnu_cxx5__ops16_Iter_equals_valIKcEEET_S6_S6_T0_ at Base 0.0+git20160702.bbc645f
+ _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_T0_SE_T1_T2_ at Base 0.0+git20160702.bbc645f
+ _ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_ at Base 0.0+git20160702.bbc645f
+ _ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElNS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_T1_ at Base 0.0+git20160702.bbc645f
+ _ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_comp_iterIPFbS2_S2_EEEEvT_T0_ at Base 0.0+git20160702.bbc645f
+ _ZlsRSoR10FastaIndex at Base 0.0+git20160702.bbc645f
+ _ZlsRSoRK15FastaIndexEntry at Base 0.0+git20160702.bbc645f
=====================================
debian/patches/autoconf.patch
=====================================
--- a/debian/patches/autoconf.patch
+++ b/debian/patches/autoconf.patch
@@ -1,5 +1,6 @@
-Author: Andreas Tille <tille at debian.org>
-Last-Update: Wed, 22 Jun 2016 16:27:46 +0200
+Author: Andreas Tille <tille at debian.org>,
+ Adrian Bunk <bunk at debian.org>
+Last-Update: Sat, 18 Aug 2018 02:26:01 +0300
Description: Add autoconf stuff to enable simple library creation
--- /dev/null
@@ -16,7 +17,7 @@ Description: Add autoconf stuff to enable simple library creation
+
+bin_PROGRAMS = fastahack
+fastahack_SOURCES = FastaHack.cpp
-+LDADD = -lfastahack -ldisorder
++LDADD = libfastahack.la -ldisorder
+
+pkgconfigdir=$(libdir)/pkgconfig
+pkgconfig_DATA = libfastahack.pc
=====================================
debian/rules
=====================================
--- a/debian/rules
+++ b/debian/rules
@@ -5,7 +5,7 @@
export DEB_BUILD_MAINT_OPTIONS=hardening=+all
%:
- dh $@ --no-parallel
+ dh $@
override_dh_install:
dh_install
View it on GitLab: https://salsa.debian.org/med-team/libfastahack/compare/70f44c31826669330fbc08665b10febd77e01db7...ebba5c1294f7f8a6dad29503d4f221b42a605864
--
View it on GitLab: https://salsa.debian.org/med-team/libfastahack/compare/70f44c31826669330fbc08665b10febd77e01db7...ebba5c1294f7f8a6dad29503d4f221b42a605864
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20180818/756a8a09/attachment-0001.html>
More information about the debian-med-commit
mailing list