[med-svn] [Git][med-team/rna-star][upstream] New upstream version 2.6.1a+dfsg

[Sascha Steinbiss]

Sascha Steinbiss pushed to branch upstream at Debian Med / rna-star


Commits:
ecb17f91 by Sascha Steinbiss at 2018-08-18T14:13:42Z
New upstream version 2.6.1a+dfsg
- - - - -


30 changed files:

- CHANGES.md
- README.md
- doc/STARmanual.pdf
- extras/doc-latex/STARmanual.tex
- extras/doc-latex/parametersDefault.tex
- extras/scripts/filterCirc.awk
- + extras/scripts/mergeGeneCounts.awk
- extras/scripts/sjFromSAMcollapseUandM.awk
- extras/scripts/sjFromSAMcollapseUandM_inclOverlaps.awk
- source/BAMbinSortByCoordinate.cpp
- source/BAMbinSortUnmapped.cpp
- source/Genome.cpp
- source/Genome.h
- source/Genome_genomeGenerate.cpp
- source/InOutStreams.cpp
- source/Parameters.cpp
- source/ParametersChimeric.h
- source/Parameters_readSAMheader.cpp
- source/ReadAlignChunk_processChunks.cpp
- source/ReadAlign_peOverlapMergeMap.cpp
- source/STAR.cpp
- source/SequenceFuns.cpp
- source/SequenceFuns.h
- source/Stats.cpp
- source/Stats.h
- source/Transcript_alignScore.cpp
- source/VERSION
- source/Variation.cpp
- source/Variation.h
- source/genomeParametersWrite.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/rna-star/commit/ecb17f9178c76308cee678cf0207ad968b86cea8

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