[med-svn] [Git][med-team/libbpp-raa][upstream] New upstream version 2.4.1
Julien Y. Dutheil
gitlab at salsa.debian.org
Wed Aug 22 15:34:29 BST 2018
Julien Y. Dutheil pushed to branch upstream at Debian Med / libbpp-raa
Commits:
7506d6dd by Julien Y. Dutheil at 2018-08-22T07:04:21Z
New upstream version 2.4.1
- - - - -
5 changed files:
- CMakeLists.txt
- Doxyfile
- bpp-raa.spec
- − header.html
- src/Bpp/Raa/RAA.cpp
Changes:
=====================================
CMakeLists.txt
=====================================
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -104,10 +104,10 @@ ENDIF(NO_DEP_CHECK)
# Packager
SET(CPACK_PACKAGE_NAME "libbpp-raa")
SET(CPACK_PACKAGE_VENDOR "Bio++ Development Team")
-SET(CPACK_PACKAGE_VERSION "2.4.0")
+SET(CPACK_PACKAGE_VERSION "2.4.1")
SET(CPACK_PACKAGE_VERSION_MAJOR "2")
SET(CPACK_PACKAGE_VERSION_MINOR "4")
-SET(CPACK_PACKAGE_VERSION_PATCH "0")
+SET(CPACK_PACKAGE_VERSION_PATCH "1")
SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "The Bio++ Remote Acnuc Access library")
SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_SOURCE_DIR}/COPYING.txt")
SET(CPACK_RESOURCE_FILE_AUTHORS "${CMAKE_SOURCE_DIR}/AUTHORS.txt")
=====================================
Doxyfile
=====================================
--- a/Doxyfile
+++ b/Doxyfile
@@ -38,7 +38,7 @@ PROJECT_NAME = bpp-raa
# could be handy for archiving the generated documentation or if some version
# control system is used.
-PROJECT_NUMBER = 2.4.0
+PROJECT_NUMBER = 2.4.1
# Using the PROJECT_BRIEF tag one can provide an optional one line description
# for a project that appears at the top of each page and should give viewer a
=====================================
bpp-raa.spec
=====================================
--- a/bpp-raa.spec
+++ b/bpp-raa.spec
@@ -3,7 +3,7 @@
URL: https://github.com/BioPP/bpp-raa
Name: bpp-raa
-Version: 2.4.0
+Version: 2.4.1
Release: 1%{?dist}
License: CECILL-2.0
Vendor: The Bio++ Project
@@ -90,8 +90,10 @@ rm -rf $RPM_BUILD_ROOT
%{_prefix}/include/*
%changelog
+* Mon Aug 13 2018 Julien Dutheil <julien.dutheil at univ-montp2.fr> 2.4.1-1
+- Compatibility gcc8.
* Mon Feb 26 2018 Julien Dutheil <julien.dutheil at univ-montp2.fr> 2.4.0-1
-- Increased interface number
+- Increased interface number.
- Removed dynamic exceptions specifications.
* Tue Jun 06 2017 Julien Dutheil <julien.dutheil at univ-montp2.fr> 2.3.1-1
- Increased interface number
=====================================
header.html deleted
=====================================
--- a/header.html
+++ /dev/null
@@ -1,27 +0,0 @@
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
- <head>
- <meta http-equiv="Content-Type" content="text/xhtml;charset=utf-8" />
- <meta http-equiv="Content-Style-Type" content="text/css" />
- <meta http-equiv="Content-Language" content="en" />
- <link href="doxygen.css" rel="stylesheet" type="text/css">
- <link href="tabs.css" rel="stylesheet" type="text/css">
- </head>
-
- <body>
- <div id="banner">
- <h1><a href="http://kimura.univ-montp2.fr/BioPP/" accesskey="1" target="_top">Bio++</a> Class documentation</h1>
- </div>
-
- <div class="tabs">
- <ul>
- <li><a href="http://kimura.univ-montp2.fr/BioPP/Documents/ClassDocumentation/Utils/html/index.html" target="_top"><span>Utils</span></a></li>
- <li><a href="http://kimura.univ-montp2.fr/BioPP/Documents/ClassDocumentation/NumCalc/html/index.html" target="_top"><span>NumCalc</span></a></li>
- <li><a href="http://kimura.univ-montp2.fr/BioPP/Documents/ClassDocumentation/Seq/html/index.html" target="_top"><span>SeqLib</span></a></li>
- <li><a href="http://kimura.univ-montp2.fr/BioPP/Documents/ClassDocumentation/Phyl/html/index.html" target="_top"><span>PhylLib</span></a></li>
- <li><a href="http://kimura.univ-montp2.fr/BioPP/Documents/ClassDocumentation/Pop/html/index.html" target="_top"><span>PopGenLib</span></a></li>
- <li><a href="http://kimura.univ-montp2.fr/BioPP/Documents/ClassDocumentation/Raa/html/index.html" target="_top"><span>Raa</span></a></li>
- </ul>
- </div>
-
- <br />
-
=====================================
src/Bpp/Raa/RAA.cpp
=====================================
--- a/src/Bpp/Raa/RAA.cpp
+++ b/src/Bpp/Raa/RAA.cpp
@@ -262,7 +262,7 @@ Sequence* RAA::translateCDS(int seqrank)
{
Sprot = new BasicSequence(*sname, *pstring, &AlphabetTools::PROTEIN_ALPHABET );
}
- catch (BadCharException e)
+ catch (BadCharException& e)
{
delete sname;
delete pstring;
@@ -283,14 +283,7 @@ Sequence* RAA::translateCDS(const string& name)
if (rank == 0)
return NULL;
Sequence* Sprot;
- try
- {
- Sprot = translateCDS(rank);
- }
- catch (BadCharException e)
- {
- throw e;
- }
+ Sprot = translateCDS(rank);
return Sprot;
}
View it on GitLab: https://salsa.debian.org/med-team/libbpp-raa/commit/7506d6dd0e2d1ba1e3e922649c2aebe3ddd528e6
--
View it on GitLab: https://salsa.debian.org/med-team/libbpp-raa/commit/7506d6dd0e2d1ba1e3e922649c2aebe3ddd528e6
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