[med-svn] [Git][med-team/circlator][master] 4 commits: debhelper 11
Andreas Tille
gitlab at salsa.debian.org
Mon Dec 3 07:26:52 GMT 2018
Andreas Tille pushed to branch master at Debian Med / circlator
Commits:
8025ee41 by Andreas Tille at 2018-12-03T07:15:39Z
debhelper 11
- - - - -
62436fdf by Andreas Tille at 2018-12-03T07:18:03Z
Point Vcs fields to salsa.debian.org
- - - - -
99b3691c by Andreas Tille at 2018-12-03T07:18:03Z
Standards-Version: 4.2.1
- - - - -
525fbc04 by Andreas Tille at 2018-12-03T07:18:23Z
Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
- - - - -
4 changed files:
- debian/changelog
- debian/compat
- debian/control
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+circlator (1.5.5-2) UNRELEASED; urgency=medium
+
+ * Team upload.
+ * debhelper 11
+ * Point Vcs fields to salsa.debian.org
+ * Standards-Version: 4.2.1
+ * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
+
+ -- Andreas Tille <tille at debian.org> Mon, 03 Dec 2018 08:15:39 +0100
+
circlator (1.5.5-1) unstable; urgency=medium
* Team upload.
=====================================
debian/compat
=====================================
@@ -1 +1 @@
-10
+11
=====================================
debian/control
=====================================
@@ -1,39 +1,37 @@
Source: circlator
-Section: science
-Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Afif Elghraoui <afif at debian.org>
-Build-Depends:
- debhelper (>= 10),
- dh-python,
- python3-all,
- python3-setuptools,
- python3-openpyxl,
- python3-jdcal,
- fastaq (>= 3.12.1),
- python3-pysam (>= 0.8.1),
- python3-pymummer (>= 0.9.0),
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 11~),
+ dh-python,
+ python3-all,
+ python3-setuptools,
+ python3-openpyxl,
+ python3-jdcal,
+ fastaq (>= 3.12.1),
+ python3-pysam,
+ python3-pymummer,
# Test-Depends:
- python3-nose,
- spades,
- bwa (>= 0.7.12),
- prodigal,
- canu
-Standards-Version: 4.1.3
+ python3-nose,
+ spades,
+ bwa (>= 0.7.12),
+ prodigal,
+ canu
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/circlator
+Vcs-Git: https://salsa.debian.org/med-team/circlator.git
Homepage: http://sanger-pathogens.github.io/circlator/
-Vcs-Git: https://anonscm.debian.org/git/debian-med/circlator.git
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/circlator.git
Package: circlator
Architecture: all
-Depends:
- ${misc:Depends},
- ${python3:Depends},
- prodigal,
- bwa (>= 0.7.12),
- mummer,
- samtools,
- spades
+Depends: ${misc:Depends},
+ ${python3:Depends},
+ prodigal,
+ bwa (>= 0.7.12),
+ mummer,
+ samtools,
+ spades
Suggests: canu
Description: circularize genome assemblies
Circlator is a tool to automate assembly circularization for bacterial and
=====================================
debian/rules
=====================================
@@ -9,4 +9,6 @@ export LC_ALL=C.UTF-8
dh $@ --with python3 --buildsystem=pybuild
override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
PYTHONPATH=$(CURDIR) nosetests3 -v --where=circlator/tests
+endif
View it on GitLab: https://salsa.debian.org/med-team/circlator/compare/834e1edfaf36eb88b5d3443093d98af607493e9c...525fbc0428aafe5dae1fc5687a1ec0d270520a1d
--
View it on GitLab: https://salsa.debian.org/med-team/circlator/compare/834e1edfaf36eb88b5d3443093d98af607493e9c...525fbc0428aafe5dae1fc5687a1ec0d270520a1d
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