[med-svn] [Git][med-team/libucsc][master] 14 commits: New upstream checkout

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / libucsc


Commits:
d3d22638 by Andreas Tille at 2018-12-05T09:20:03Z
New upstream checkout

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bb245128 by Andreas Tille at 2018-12-05T10:13:17Z
Keep general license

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f1e7a302 by Andreas Tille at 2018-12-05T10:13:38Z
New upstream version 0.0+git20181204.8fcb9fa0+dfsg
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189887bc by Andreas Tille at 2018-12-05T10:13:46Z
Update upstream source from tag 'upstream/0.0+git20181204.8fcb9fa0+dfsg'

Update to upstream version '0.0+git20181204.8fcb9fa0+dfsg'
with Debian dir 60a15ddf7a8ce395dce3ca3f7989e4e25ad12d71
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4d0fa18b by Andreas Tille at 2018-12-05T10:43:32Z
New upstream commit, for the moment llive with code copy of htslib, Build-Depends: uuid-dev

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53ca51c6 by Andreas Tille at 2018-12-08T19:55:37Z
Add license to code copy of htslib

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a8fb06ec by Andreas Tille at 2018-12-08T19:58:22Z
Remove configure generated files

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fe542e5d by Andreas Tille at 2018-12-08T20:02:19Z
Fix path

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49405195 by Andreas Tille at 2018-12-08T20:03:16Z
mysqldb is outdated thus Build-Depends: libmariadb-java

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e38a6e12 by Andreas Tille at 2018-12-08T20:04:06Z
Build htslib, no parallel build

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7d2bc6e5 by Andreas Tille at 2018-12-08T20:05:17Z
Fix Section

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bf9c9fb7 by Andreas Tille at 2018-12-08T20:12:25Z
New upstream version 0.0+git20181204.8fcb9fa0+dfsg
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510e2c7c by Andreas Tille at 2018-12-08T20:12:35Z
Update upstream source from tag 'upstream/0.0+git20181204.8fcb9fa0+dfsg'

Update to upstream version '0.0+git20181204.8fcb9fa0+dfsg'
with Debian dir 3e003dad6df51e4ba1a3fa9284d9107d9cb8de64
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2b5b375e by Andreas Tille at 2018-12-08T20:22:23Z
Fix typo

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30 changed files:

- debian/changelog
- debian/control
- debian/copyright
- debian/rules
- + src/LICENSE
- + src/blat/blat.c
- + src/blat/hCrea.geno
- + src/blat/hCrea.mrna
- + src/blat/hCrea.pep
- + src/blat/mCrea.geno
- + src/blat/mCrea.mrna
- + src/blat/mCrea.pep
- + src/blat/makefile
- + src/blat/refFine.psl
- + src/blat/refProt.psl
- + src/blat/refProtX.psl
- + src/blat/refRna.psl
- + src/blat/refRnaX.psl
- + src/blat/test/badSplice/chr16part.fa
- + src/blat/test/badSplice/small2.fa
- + src/blat/test/badSplice/test
- + src/blat/test/dupeTargetName/q.fa
- + src/blat/test/dupeTargetName/t.fa
- + src/blat/test/intron50k/expected/test1.psl
- + src/blat/test/intron50k/expected/test2.psl
- + src/blat/test/intron50k/expected/test3.psl
- + src/blat/test/intron50k/query.fa
- + src/blat/test/intron50k/target.fa
- + src/blat/test/makefile
- + src/blat/test/missBlastOut/C57_0005_A6_BB_5.fa


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libucsc/compare/6eba386e173fc491d5d8c113017c8dc1ee8037ff...2b5b375e0189f8e206967dca47e935e8a460119b

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View it on GitLab: https://salsa.debian.org/med-team/libucsc/compare/6eba386e173fc491d5d8c113017c8dc1ee8037ff...2b5b375e0189f8e206967dca47e935e8a460119b
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