[med-svn] [Git][med-team/rapmap][master] Add rapmap-dev package to simplify building salmon and avoid code duplication in…

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / rapmap


Commits:
b2a5edcb by Andreas Tille at 2018-12-12T20:43:20Z
Add rapmap-dev package to simplify building salmon and avoid code duplication in salmon package source

- - - - -


3 changed files:

- debian/changelog
- debian/control
- + debian/rapmap-dev.install


Changes:

=====================================
debian/changelog
=====================================
@@ -9,6 +9,8 @@ rapmap (0.12.0+dfsg-1) UNRELEASED; urgency=medium
   * Do not exclude spdlog any more as long as it is not ported to
     version spdlog 1.2.x
     Closes: #909766
+  * Add rapmap-dev package to simplify building salmon and avoid code
+    duplication in salmon package source
 
  -- Andreas Tille <tille at debian.org>  Wed, 12 Dec 2018 20:47:27 +0100
 


=====================================
debian/control
=====================================
@@ -66,3 +66,23 @@ Description: example data for rapmap - rapid sensitive and accurate DNA read map
  other tools.
  .
  This package contains example data to test this program.
+
+Package: rapmap-dev
+Architecture: all
+Depends: ${misc:Depends}
+Description: rapmap - rapid sensitive and accurate DNA read mapping (some headers)
+ RapMap is a testing ground for ideas in quasi-mapping / (lightweight /
+ pseudo) transcriptome alignment. That means that, at this point, it is
+ somewhat experimental. The develop branch will have the latest
+ improvements and additions, but is not guaranteed to be stable between
+ commits. Breaking changes to the master branch will be accompanied by a
+ tag to the version before the breaking change. Currently, RapMap is a
+ stand-alone quasi-mapper that can be used with other tools. It is also
+ being used as part of Sailfish and Salmon. Eventually, the hope is to
+ create and stabilize an API so that it can be used as a library from
+ other tools.
+ .
+ This package contains some headers and C++ source files which are
+ included by package salmon and are provided here in an accessible
+ way to avoid code duplication.  Usually there is no reason to install
+ this package except to build the salmon package.


=====================================
debian/rapmap-dev.install
=====================================
@@ -0,0 +1,12 @@
+src/bit_array.c 		usr/share/rapmap/src
+src/HitManager.cpp      	usr/share/rapmap/src
+src/rank9b.cpp  		usr/share/rapmap/src
+src/RapMapFileSystem.cpp        usr/share/rapmap/src
+src/RapMapSAIndex.cpp   	usr/share/rapmap/src
+src/RapMapSAIndexer.cpp 	usr/share/rapmap/src
+src/RapMapUtils.cpp     	usr/share/rapmap/src
+
+include/macros.h        	usr/include/rapmap
+include/rank9b.h        	usr/include/rapmap
+include/Kmer.hpp		usr/include/rapmap
+include/RapMapFileSystem.hpp    usr/include/rapmap



View it on GitLab: https://salsa.debian.org/med-team/rapmap/commit/b2a5edcbb1f86062a01d6f12356eac9bc74af9af

-- 
View it on GitLab: https://salsa.debian.org/med-team/rapmap/commit/b2a5edcbb1f86062a01d6f12356eac9bc74af9af
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