[med-svn] [Git][med-team/rapmap][master] 2 commits: Add TODO about spdlog code copy

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / rapmap


Commits:
7243a997 by Andreas Tille at 2018-12-13T07:23:34Z
Add TODO about spdlog code copy

- - - - -
203ed6e5 by Andreas Tille at 2018-12-13T09:13:39Z
More missing headers for salmon

- - - - -


3 changed files:

- + debian/TODO
- debian/changelog
- debian/rapmap-dev.install


Changes:

=====================================
debian/TODO
=====================================
@@ -0,0 +1,4 @@
+Replace code copy of spdlog by Debian packaged version once either
+upstream might have switched (see
+  https://github.com/COMBINE-lab/RapMap/issues/44
+) or we can develop a patch to adapt RapMap code to Debian spdlog.


=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+rapmap (0.12.0+dfsg-2) UNRELEASED; urgency=medium
+
+  * Add further header files to rapmap-dev since these are used in salmon
+
+ -- Andreas Tille <tille at debian.org>  Wed, 12 Dec 2018 23:15:17 +0100
+
 rapmap (0.12.0+dfsg-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/rapmap-dev.install
=====================================
@@ -6,16 +6,23 @@ src/RapMapSAIndex.cpp   		usr/share/rapmap/src
 src/RapMapSAIndexer.cpp 		usr/share/rapmap/src
 src/RapMapUtils.cpp     		usr/share/rapmap/src
 
+include/bit_*.h				usr/include/rapmap
 include/kseq.h				usr/include/rapmap
 include/macros.h			usr/include/rapmap
 include/rank9b.h        		usr/include/rapmap
-include/chobo/small_vector.hpp		usr/include/chobo
+include/chobo/small_vector.hpp		usr/include/rapmap/chobo
 include/sparsepp/spp.h			usr/include/rapmap/sparsepp
 include/sparsepp/spp_config.h		usr/include/rapmap/sparsepp
 include/sparsepp/spp_stdint.h		usr/include/rapmap/sparsepp
 include/sparsepp/spp_traits.h		usr/include/rapmap/sparsepp
 include/sparsepp/spp_utils.h		usr/include/rapmap/sparsepp
+include/Boo*.hpp			usr/include/rapmap
+include/FrugalBooMap.hpp		usr/include/rapmap
+include/IndexHeader.hpp			usr/include/rapmap
 include/Kmer.hpp			usr/include/rapmap
+include/RapMapConfig.hpp		usr/include/rapmap
 include/RapMapFileSystem.hpp		usr/include/rapmap
+include/RapMapSAIndex.hpp		usr/include/rapmap
 include/RapMapUtils.hpp			usr/include/rapmap
 include/SparseHashSerializer.hpp	usr/include/rapmap
+include/SpinLock.hpp			usr/include/rapmap



View it on GitLab: https://salsa.debian.org/med-team/rapmap/compare/f50b9d72962e0ccad8e35d0942890cfd1ad65015...203ed6e583851f1eda3ad537d70dba73e4a81bde

-- 
View it on GitLab: https://salsa.debian.org/med-team/rapmap/compare/f50b9d72962e0ccad8e35d0942890cfd1ad65015...203ed6e583851f1eda3ad537d70dba73e4a81bde
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20181213/873b1147/attachment-0001.html>