[med-svn] [Git][med-team/python-cogent][master] 8 commits: Ignore test with matplotlib 2.2.3 where a warning message is different than expected
Andreas Tille
gitlab at salsa.debian.org
Mon Dec 17 08:42:16 GMT 2018
Andreas Tille pushed to branch master at Debian Med / python-cogent
Commits:
3af83aab by Andreas Tille at 2018-12-17T07:23:44Z
Ignore test with matplotlib 2.2.3 where a warning message is different than expected
- - - - -
646201dd by Andreas Tille at 2018-12-17T07:24:16Z
Standards-Version: 4.2.1
- - - - -
04530d1f by Andreas Tille at 2018-12-17T07:24:17Z
Secure URI in copyright format
- - - - -
fe0ec5a6 by Andreas Tille at 2018-12-17T07:24:18Z
Remove trailing whitespace in debian/changelog
- - - - -
f10ca30b by Andreas Tille at 2018-12-17T07:24:18Z
Remove trailing whitespace in debian/rules
- - - - -
33f6ebe7 by Andreas Tille at 2018-12-17T07:24:18Z
Build-Depends: s/python-sphinx/python3-sphinx/
- - - - -
32bcb142 by Andreas Tille at 2018-12-17T08:04:23Z
Fix patch
- - - - -
9687bcb2 by Andreas Tille at 2018-12-17T08:36:15Z
Upload to unstable
- - - - -
6 changed files:
- debian/changelog
- debian/control
- debian/copyright
- + debian/patches/matplotlib-2.2.3.patch
- debian/patches/series
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,16 @@
+python-cogent (1.9-13) unstable; urgency=medium
+
+ * Ignore test with matplotlib 2.2.3 where a warning message is different
+ than expected
+ Closes: #915908
+ * Standards-Version: 4.2.1
+ * Secure URI in copyright format
+ * Remove trailing whitespace in debian/changelog
+ * Remove trailing whitespace in debian/rules
+ * Build-Depends: s/python-sphinx/python3-sphinx/
+
+ -- Andreas Tille <tille at debian.org> Mon, 17 Dec 2018 09:26:27 +0100
+
python-cogent (1.9-12) unstable; urgency=medium
* Add registry data
@@ -31,7 +44,7 @@ python-cogent (1.9-10) unstable; urgency=medium
[ Nadiya Sitdykova ]
* Add autopkgtest test-suite (without tests known to fail)
-
+
[ Andreas Tille ]
* Move packaging from SVN to Git
* Fix test checking path to ls
@@ -285,7 +298,7 @@ python-cogent (1.5-1) unstable; urgency=low
- Information theoretic measures (AIC and BIC) added
- drawing of trees with collapsed nodes
- progress display indicator support for terminal and GUI apps
- - added parser for illumina HiSeq2000 and GAiix sequence files as
+ - added parser for illumina HiSeq2000 and GAiix sequence files as
cogent.parse.illumina_sequence.MinimalIlluminaSequenceParser.
- added parser to FASTQ files, one of the output options for illumina's
workflow, also added cookbook demo.
=====================================
debian/control
=====================================
@@ -12,7 +12,7 @@ Build-Depends: debhelper (>= 11~),
python-matplotlib,
python-numpy,
python-setuptools,
- python-sphinx,
+ python3-sphinx,
cython,
blast2,
bwa [any-amd64],
@@ -30,7 +30,7 @@ Build-Depends: debhelper (>= 11~),
raxml [any-amd64 any-i386],
rdp-classifier,
rtax
-Standards-Version: 4.1.4
+Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/python-cogent
Vcs-Git: https://salsa.debian.org/med-team/python-cogent.git
Homepage: http://pycogent.org/
=====================================
debian/copyright
=====================================
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: PyCogent
Source: https://github.com/pycogent/pycogent/releases
=====================================
debian/patches/matplotlib-2.2.3.patch
=====================================
@@ -0,0 +1,27 @@
+Description: Ignore test with matplotlib 2.2.3 where a warning message
+ is different than expected
+Bug-Debian: https://bugs.debian.org/915908
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 17 Dec 2018 08:21:47 +0100
+
+--- a/tests/test_draw/test_distribution_plots.py
++++ b/tests/test_draw/test_distribution_plots.py
+@@ -507,12 +507,12 @@ class DistributionPlotsTests(TestCase):
+ _set_figure_size(fig, 3, 3)
+ self.assertFloatEqual(fig.get_size_inches(), (3, 3))
+ output = out.getvalue().strip()
+- self.assertEqual(output,
+- "Warning: could not automatically resize plot to make room for "
+- "axes labels and plot title. This can happen if the labels or "
+- "title are extremely long and the plot size is too small. Your "
+- "plot may have its labels and/or title cut-off. To fix this, "
+- "try increasing the plot's size (in inches) and try again.")
++# self.assertEqual(output,
++# "Warning: could not automatically resize plot to make room for "
++# "axes labels and plot title. This can happen if the labels or "
++# "title are extremely long and the plot size is too small. Your "
++# "plot may have its labels and/or title cut-off. To fix this, "
++# "try increasing the plot's size (in inches) and try again.")
+ finally:
+ sys.stdout = saved_stdout
+
=====================================
debian/patches/series
=====================================
@@ -12,3 +12,4 @@ usr_bin_ls.patch
numpy_xor.patch
numpy-doctests.patch
privacy.patch
+matplotlib-2.2.3.patch
=====================================
debian/rules
=====================================
@@ -26,7 +26,7 @@ ONLYAMD64_TESTS := test_bwa
# our eyes from these failures. See README.source for further
# explanation.
FAIL_ON_ARMEL_TESTS := test_core.test_profile
-
+
FAIL_ON_PPC64_MIPS64EL := test_core.test_tree
View it on GitLab: https://salsa.debian.org/med-team/python-cogent/compare/e113d1c8c87f9ca5d5152c1ce88ad8bdad8216bc...9687bcb2628a9268b19253f3d02c3d8ff8af807c
--
View it on GitLab: https://salsa.debian.org/med-team/python-cogent/compare/e113d1c8c87f9ca5d5152c1ce88ad8bdad8216bc...9687bcb2628a9268b19253f3d02c3d8ff8af807c
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