[med-svn] [Git][med-team/libhpptools][master] 2 commits: Do not Build-Depend emacs just to convert org doc to html but rather use prepared file
Andreas Tille
gitlab at salsa.debian.org
Thu Dec 20 20:08:49 GMT 2018
Andreas Tille pushed to branch master at Debian Med / libhpptools
Commits:
583b9046 by Andreas Tille at 2018-12-20T20:02:54Z
Do not Build-Depend emacs just to convert org doc to html but rather use prepared file
- - - - -
519fb6c6 by Andreas Tille at 2018-12-20T20:03:39Z
Upload to unstable
- - - - -
6 changed files:
- + debian/README.html
- debian/changelog
- − debian/clean
- debian/control
- debian/docs
- debian/rules
Changes:
=====================================
debian/README.html
=====================================
@@ -0,0 +1,350 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
+"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
+<head>
+<title>README</title>
+<!-- 2018-12-20 Do 20:45 -->
+<meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
+<meta name="generator" content="Org-mode" />
+<meta name="author" content="Andreas Tille" />
+<style type="text/css">
+ <!--/*--><![CDATA[/*><!--*/
+ .title { text-align: center; }
+ .todo { font-family: monospace; color: red; }
+ .done { color: green; }
+ .tag { background-color: #eee; font-family: monospace;
+ padding: 2px; font-size: 80%; font-weight: normal; }
+ .timestamp { color: #bebebe; }
+ .timestamp-kwd { color: #5f9ea0; }
+ .right { margin-left: auto; margin-right: 0px; text-align: right; }
+ .left { margin-left: 0px; margin-right: auto; text-align: left; }
+ .center { margin-left: auto; margin-right: auto; text-align: center; }
+ .underline { text-decoration: underline; }
+ #postamble p, #preamble p { font-size: 90%; margin: .2em; }
+ p.verse { margin-left: 3%; }
+ pre {
+ border: 1px solid #ccc;
+ box-shadow: 3px 3px 3px #eee;
+ padding: 8pt;
+ font-family: monospace;
+ overflow: auto;
+ margin: 1.2em;
+ }
+ pre.src {
+ position: relative;
+ overflow: visible;
+ padding-top: 1.2em;
+ }
+ pre.src:before {
+ display: none;
+ position: absolute;
+ background-color: white;
+ top: -10px;
+ right: 10px;
+ padding: 3px;
+ border: 1px solid black;
+ }
+ pre.src:hover:before { display: inline;}
+ pre.src-sh:before { content: 'sh'; }
+ pre.src-bash:before { content: 'sh'; }
+ pre.src-emacs-lisp:before { content: 'Emacs Lisp'; }
+ pre.src-R:before { content: 'R'; }
+ pre.src-perl:before { content: 'Perl'; }
+ pre.src-java:before { content: 'Java'; }
+ pre.src-sql:before { content: 'SQL'; }
+
+ table { border-collapse:collapse; }
+ caption.t-above { caption-side: top; }
+ caption.t-bottom { caption-side: bottom; }
+ td, th { vertical-align:top; }
+ th.right { text-align: center; }
+ th.left { text-align: center; }
+ th.center { text-align: center; }
+ td.right { text-align: right; }
+ td.left { text-align: left; }
+ td.center { text-align: center; }
+ dt { font-weight: bold; }
+ .footpara:nth-child(2) { display: inline; }
+ .footpara { display: block; }
+ .footdef { margin-bottom: 1em; }
+ .figure { padding: 1em; }
+ .figure p { text-align: center; }
+ .inlinetask {
+ padding: 10px;
+ border: 2px solid gray;
+ margin: 10px;
+ background: #ffffcc;
+ }
+ #org-div-home-and-up
+ { text-align: right; font-size: 70%; white-space: nowrap; }
+ textarea { overflow-x: auto; }
+ .linenr { font-size: smaller }
+ .code-highlighted { background-color: #ffff00; }
+ .org-info-js_info-navigation { border-style: none; }
+ #org-info-js_console-label
+ { font-size: 10px; font-weight: bold; white-space: nowrap; }
+ .org-info-js_search-highlight
+ { background-color: #ffff00; color: #000000; font-weight: bold; }
+ /*]]>*/-->
+</style>
+<script type="text/javascript">
+/*
+ at licstart The following is the entire license notice for the
+JavaScript code in this tag.
+
+Copyright (C) 2012-2013 Free Software Foundation, Inc.
+
+The JavaScript code in this tag is free software: you can
+redistribute it and/or modify it under the terms of the GNU
+General Public License (GNU GPL) as published by the Free Software
+Foundation, either version 3 of the License, or (at your option)
+any later version. The code is distributed WITHOUT ANY WARRANTY;
+without even the implied warranty of MERCHANTABILITY or FITNESS
+FOR A PARTICULAR PURPOSE. See the GNU GPL for more details.
+
+As additional permission under GNU GPL version 3 section 7, you
+may distribute non-source (e.g., minimized or compacted) forms of
+that code without the copy of the GNU GPL normally required by
+section 4, provided you include this license notice and a URL
+through which recipients can access the Corresponding Source.
+
+
+ at licend The above is the entire license notice
+for the JavaScript code in this tag.
+*/
+<!--/*--><![CDATA[/*><!--*/
+ function CodeHighlightOn(elem, id)
+ {
+ var target = document.getElementById(id);
+ if(null != target) {
+ elem.cacheClassElem = elem.className;
+ elem.cacheClassTarget = target.className;
+ target.className = "code-highlighted";
+ elem.className = "code-highlighted";
+ }
+ }
+ function CodeHighlightOff(elem, id)
+ {
+ var target = document.getElementById(id);
+ if(elem.cacheClassElem)
+ elem.className = elem.cacheClassElem;
+ if(elem.cacheClassTarget)
+ target.className = elem.cacheClassTarget;
+ }
+/*]]>*///-->
+</script>
+</head>
+<body>
+<div id="content">
+<h1 class="title">README</h1>
+<div id="table-of-contents">
+<h2>Table of Contents</h2>
+<div id="text-table-of-contents">
+<ul>
+<li><a href="#sec-1">1. C++ Header Tools</a>
+<ul>
+<li><a href="#sec-1-1">1.1. Examples</a>
+<ul>
+<li><a href="#sec-1-1-1">1.1.1. logger</a></li>
+<li><a href="#sec-1-1-2">1.1.2. zstr</a></li>
+<li><a href="#sec-1-1-3">1.1.3. alg</a></li>
+<li><a href="#sec-1-1-4">1.1.4. logsum</a></li>
+<li><a href="#sec-1-1-5">1.1.5. pfor</a></li>
+<li><a href="#sec-1-1-6">1.1.6. tpool</a></li>
+</ul>
+</li>
+<li><a href="#sec-1-2">1.2. License</a></li>
+</ul>
+</li>
+</ul>
+</div>
+</div>
+
+<div id="outline-container-sec-1" class="outline-2">
+<h2 id="sec-1"><span class="section-number-2">1</span> C++ Header Tools</h2>
+<div class="outline-text-2" id="text-1">
+<p>
+A collection of C++ (mostly, C++11) header-only utility libraries.
+</p>
+</div>
+
+<div id="outline-container-sec-1-1" class="outline-3">
+<h3 id="sec-1-1"><span class="section-number-3">1.1</span> Examples</h3>
+<div class="outline-text-3" id="text-1-1">
+<p>
+Below you can find code snippets. For full examples and some tests, see the <i>examples</i> folder. In some cases, sample programs are included in the header files themselves, and they can be enabled by specific CPP defines.
+</p>
+</div>
+
+<div id="outline-container-sec-1-1-1" class="outline-4">
+<h4 id="sec-1-1-1"><span class="section-number-4">1.1.1</span> logger</h4>
+<div class="outline-text-4" id="text-1-1-1">
+<p>
+A thread-safe facility-based logging mechanism.
+</p>
+
+<pre class="example">
+#include "logger.hpp"
+...
+logger::Logger::set_default_level("info");
+int c = 0;
+LOG(info) << "now you see me; c=" << ++c << "\n";
+assert(c == 1);
+LOG(debug) << "now you don't; c=" << ++c << "\n";
+assert(c == 1);
+</pre>
+</div>
+</div>
+
+<div id="outline-container-sec-1-1-2" class="outline-4">
+<h4 id="sec-1-1-2"><span class="section-number-4">1.1.2</span> zstr</h4>
+<div class="outline-text-4" id="text-1-1-2">
+<p>
+A ZLib wrapper.
+</p>
+
+<pre class="example">
+#include "zstr.hpp"
+...
+zstr::ifstream(argv[1]) >> i;
+</pre>
+</div>
+</div>
+
+<div id="outline-container-sec-1-1-3" class="outline-4">
+<h4 id="sec-1-1-3"><span class="section-number-4">1.1.3</span> alg</h4>
+<div class="outline-text-4" id="text-1-1-3">
+<p>
+Collection of new and extended SL algorithms. Contents:
+</p>
+
+<ul class="org-ul">
+<li><code>for_each[_it][_advance]</code>: Apply functor to elements in range. Options: take iterator pair or range as input; pass iterator instead of element to functor; store next iterator prior to applying functor (e.g. use: remove elements from a list in one pass.)
+</li>
+
+<li><code>(min|max|minmax)[_value]_of</code>: Find min and/or max in range. Options: take iterator pair or range as input; optionally use functor to extract key; return iterator(s) or value(s).
+</li>
+
+<li><code>mean_stdv_of</code>: Find mean and sample stdv of elements in range. Options: take iterator pair or range as input; optionally use functor to extract key.
+</li>
+
+<li><code>(equal|all|any)_of</code>: Check that all elements in a range are equal, or that all are true, or that at least one is true. Options: take iterator pair or range as input; optionally use functor to extract key.
+</li>
+
+<li><code>os_join</code>: Use <code>operator <<</code> overloads to print range or to convert it to string using a custom separator. Options: take iterator pair or range as input; optionally use functor to extract key.
+</li>
+</ul>
+
+<pre class="example">
+#include "alg.hpp"
+...
+std::list<int> l{3, 6, 10, 18};
+// erase elements == 0 mod 5 => l == {3, 6, 18}
+alg::for_each_it_advance(l, [&l] (std::list<int>::iterator it) { if (*it%5 == 0) l.erase(it); });
+// iterator to minimum value mod 5 => iterator to 6
+auto it_min_val_mod_5 = alg::min_of(l, [] (int i) { return i%5; });
+// all equal mod 3 => true
+bool equal_mod_3 = alg::equal_of(l, [] (int i) { return i%3; });
+// to ostream => "l: 3, 6, 18"
+std::cout << "l: " << alg::os_join(l, ", ") << std::endl;
+</pre>
+</div>
+</div>
+
+<div id="outline-container-sec-1-1-4" class="outline-4">
+<h4 id="sec-1-1-4"><span class="section-number-4">1.1.4</span> logsum</h4>
+<div class="outline-text-4" id="text-1-1-4">
+<p>
+Floating point additions in logarithmic space using table lookup.
+</p>
+
+<p>
+<b>Note</b>: This library is based on Sean Eddy's code, originall part of HMMER. The version included in here is header-only, and it using implicit table initialization (no need to explicitly call <code>p7_FLogsumInit()</code>).
+</p>
+
+<pre class="example">
+#include "logsum.hpp"
+...
+float r = p7_FLogsum(.5, .3); // ~= log(exp(.5) + exp(.3))
+</pre>
+</div>
+</div>
+
+<div id="outline-container-sec-1-1-5" class="outline-4">
+<h4 id="sec-1-1-5"><span class="section-number-4">1.1.5</span> pfor</h4>
+<div class="outline-text-4" id="text-1-1-5">
+<p>
+A C++11-based parallel for, with optional output sorting.
+</p>
+
+<pre class="example">
+#include "pfor.hpp"
+...
+std::vector< unsigned > v(1000);
+unsigned crt_idx = 0;
+pfor::pfor< unsigned >(
+ 4, // num_threads
+ 10, // chunk_size
+ [&] (unsigned& i) // get_item
+ {
+ if (crt_idx >= v.size()) return false;
+ i = crt_idx++; return true;
+ },
+ [&] (unsigned& i) // process_item
+ {
+ v[i] = i*i;
+ });
+</pre>
+</div>
+</div>
+
+<div id="outline-container-sec-1-1-6" class="outline-4">
+<h4 id="sec-1-1-6"><span class="section-number-4">1.1.6</span> tpool</h4>
+<div class="outline-text-4" id="text-1-1-6">
+<p>
+A C++11-based thread pool.
+</p>
+
+<pre class="example">
+#include "tpool.hpp"
+...
+void some_work(unsigned tid, unsigned i);
+...
+// create a pool of 4 worker threads
+tpool::tpool p(4);
+// perform 10 rounds of work
+for (int unsigned = 0; round < 10; ++round)
+{
+ // in each round, work on n items
+ for (unsigned i = 0; i < n; i += 2)
+ {
+ p.add_job(std::bind(some_work, std::placeholders::_1, i));
+ // Note: the lambda must capture i by value, not by reference
+ p.add_job([&,i] (unsigned tid) { some_work(tid, i + 1); });
+ }
+ p.wait_jobs();
+}
+</pre>
+</div>
+</div>
+</div>
+
+<div id="outline-container-sec-1-2" class="outline-3">
+<h3 id="sec-1-2"><span class="section-number-3">1.2</span> License</h3>
+<div class="outline-text-3" id="text-1-2">
+<p>
+<i>MIT License</i>.
+</p>
+</div>
+</div>
+</div>
+</div>
+<div id="postamble" class="status">
+<p class="author">Author: Andreas Tille</p>
+<p class="date">Created: 2018-12-20 Do 20:45</p>
+<p class="creator"><a href="http://www.gnu.org/software/emacs/">Emacs</a> 25.2.2 (<a href="http://orgmode.org">Org</a> mode 8.2.10)</p>
+<p class="validation"><a href="http://validator.w3.org/check?uri=referer">Validate</a></p>
+</div>
+</body>
+</html>
=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+libhpptools (1.1.1-3) unstable; urgency=medium
+
+ * Do not Build-Depend emacs just to convert org doc to html but
+ rather use prepared file
+ Closes: #916872
+
+ -- Andreas Tille <tille at debian.org> Thu, 20 Dec 2018 21:03:16 +0100
+
libhpptools (1.1.1-2) unstable; urgency=medium
* debhelper 11
=====================================
debian/clean deleted
=====================================
@@ -1 +0,0 @@
-README.html
=====================================
debian/control
=====================================
@@ -3,8 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Andreas Tille <tille at debian.org>
Section: libdevel
Priority: optional
-Build-Depends: debhelper (>= 11~),
- emacs
+Build-Depends: debhelper (>= 11~)
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/libhpptools
Vcs-Git: https://salsa.debian.org/med-team/libhpptools.git
=====================================
debian/docs
=====================================
@@ -1 +1 @@
-README.html
+debian/README.html
=====================================
debian/rules
=====================================
@@ -6,5 +6,9 @@
dh $@
override_dh_installdocs:
- emacs README.org --batch -f org-html-export-to-html --kill
+ if [ `md5sum README.org | cut -d' ' -f1` != 8553f5ef47e0cba27a789b3386ab59fd ] ; then \
+ echo "Upstream has changed README.org" ; \
+ echo "Please call 'emacs README.org --batch -f org-html-export-to-html --kill'" ; \
+ exit -1 ; \
+ fi
dh_installdocs
View it on GitLab: https://salsa.debian.org/med-team/libhpptools/compare/ae4f35f7420fa8b75386d125643246ede9ec5f8b...519fb6c6ae65b462f8b66affb6b41d41aaf82ea3
--
View it on GitLab: https://salsa.debian.org/med-team/libhpptools/compare/ae4f35f7420fa8b75386d125643246ede9ec5f8b...519fb6c6ae65b462f8b66affb6b41d41aaf82ea3
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