[med-svn] [daligner] branch upstream updated (3c46bb0 -> 153de3c)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch upstream
in repository daligner.

      from  3c46bb0   New upstream version 1.0+20171010
       new  153de3c   New upstream version 1.0+20180108

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DB.c           | 325 +++++++++++++++++++++++++++++++++++++++++++--------------
 DB.h           | 208 +++++++++++++++++++++++++++++-------
 HPC.daligner.c |  20 ++--
 LAcat.c        |  16 +--
 LAcheck.c      |  12 +--
 LAdump.c       |  30 +++---
 LAindex.c      |   4 +-
 LAmerge.c      |  12 +--
 LAshow.c       |  17 ++-
 LAsort.c       |  14 +--
 LAsplit.c      |  18 ++--
 align.c        | 128 +++++++++++++++++------
 align.h        |  13 ++-
 daligner.c     |  38 +++----
 filter.c       |  20 ++--
 filter.h       |   4 +-
 16 files changed, 638 insertions(+), 241 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/daligner.git