[med-svn] [ariba] branch master updated (a72b2ea -> 587424c)

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

satta pushed a change to branch master
in repository ariba.

      from  a72b2ea   use debhelper 10
       new  9d05111   new upstream release
       new  110e4fe   New upstream version 2.11.0+ds
       new  d63dc76   Update upstream source from tag 'upstream/2.11.0+ds'
       new  587424c   dch -r

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.md                                          | 122 ++++++++++---
 ariba/assembly.py                                  | 114 +++++++++++-
 ariba/cluster.py                                   |  95 +++++++---
 ariba/clusters.py                                  | 199 +++++++++++++--------
 ariba/common.py                                    |  10 +-
 ariba/external_progs.py                            |  16 +-
 ariba/mic_plotter.py                               |   2 +
 ariba/tasks/run.py                                 |   4 +-
 ariba/tests/assembly_test.py                       |  48 ++++-
 ariba/tests/cluster_test.py                        |  72 +++++---
 ...mbly_test_assemble_with_spades_fails_reads_1.fq |   4 +
 ...mbly_test_assemble_with_spades_fails_reads_2.fq |   5 +
 ... assembly_test_assemble_with_spades_reads_1.fq} |   0
 ... assembly_test_assemble_with_spades_reads_2.fq} |   0
 .../assembly_test_check_spades_log_file.log.bad    |   5 +
 .../assembly_test_check_spades_log_file.log.good   |   5 +
 debian/changelog                                   |   6 +
 scripts/ariba                                      |   6 +
 setup.py                                           |   2 +-
 19 files changed, 554 insertions(+), 161 deletions(-)
 create mode 100644 ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq
 create mode 100644 ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq
 copy ariba/tests/data/{assembly_assemble_with_fermilite.reads_1.fq => assembly_test_assemble_with_spades_reads_1.fq} (100%)
 copy ariba/tests/data/{assembly_assemble_with_fermilite.reads_2.fq => assembly_test_assemble_with_spades_reads_2.fq} (100%)
 create mode 100644 ariba/tests/data/assembly_test_check_spades_log_file.log.bad
 create mode 100644 ariba/tests/data/assembly_test_check_spades_log_file.log.good

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