[med-svn] [ariba] 03/04: Update upstream source from tag 'upstream/2.11.0+ds'

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository ariba.

commit d63dc767a8c86441d895cfb5e162887e18217cef
Merge: 9d05111 110e4fe
Author: Sascha Steinbiss <satta at debian.org>
Date:   Mon Feb 5 09:46:36 2018 +0100

    Update upstream source from tag 'upstream/2.11.0+ds'
    
    Update to upstream version '2.11.0+ds'
    with Debian dir 7200ef6565e77a74e718f6d6ef70a60a1d8fc91a

 README.md                                          | 122 ++++++++---
 ariba/assembly.py                                  | 114 +++++++++-
 ariba/cluster.py                                   |  95 ++++++---
 ariba/clusters.py                                  | 199 +++++++++++-------
 ariba/common.py                                    |  10 +-
 ariba/external_progs.py                            |  16 +-
 ariba/mic_plotter.py                               |   2 +
 ariba/tasks/run.py                                 |   4 +-
 ariba/tests/assembly_test.py                       |  48 ++++-
 ariba/tests/cluster_test.py                        |  72 +++++--
 ...mbly_test_assemble_with_spades_fails_reads_1.fq |   4 +
 ...mbly_test_assemble_with_spades_fails_reads_2.fq |   5 +
 .../assembly_test_assemble_with_spades_reads_1.fq  | 232 +++++++++++++++++++++
 .../assembly_test_assemble_with_spades_reads_2.fq  | 232 +++++++++++++++++++++
 .../assembly_test_check_spades_log_file.log.bad    |   5 +
 .../assembly_test_check_spades_log_file.log.good   |   5 +
 scripts/ariba                                      |   6 +
 setup.py                                           |   2 +-
 18 files changed, 1012 insertions(+), 161 deletions(-)

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