[med-svn] [kraken] branch upstream updated (1e43ce8 -> db23a36)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository kraken.

      from  1e43ce8   New upstream version 1.0
       new  db23a36   New upstream version 1.1

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CHANGELOG                  |  10 +++
 docs/MANUAL.html           | 218 +++++++++++++++++++++++++--------------------
 scripts/kraken             |  17 +++-
 scripts/read_merger.pl     |  59 +++++++++---
 scripts/rsync_from_ncbi.pl |   2 +-
 src/classify.cpp           | 200 ++++++++++++++++++++++++++++++++++++-----
 6 files changed, 374 insertions(+), 132 deletions(-)

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