[med-svn] [insighttoolkit] branch upstream updated (d48db90 -> 17b6cb1)
Gert Wollny
gewo at moszumanska.debian.org
Mon Feb 5 17:32:58 UTC 2018
This is an automated email from the git hooks/post-receive script.
gewo pushed a change to branch upstream
in repository insighttoolkit.
from d48db90 New upstream version 4.12.2-dfsg1
adds 17b6cb1 New upstream version 4.13.0-dfsg1
No new revisions were added by this update.
Summary of changes:
.circleci/config.yml | 80 +
CMake/CTestCustom.cmake.in | 3 +
CMake/FindGTest.cmake | 214 +++
CMake/FindICU.cmake | 350 ++++
CMake/GenerateExportHeader.cmake | 80 +-
CMake/GoogleTest.cmake | 73 +
CMake/ITKConfig.cmake.in | 32 +-
CMake/ITKInternalConfig.cmake | 47 +
CMake/ITKModuleAPI.cmake | 47 +-
CMake/ITKModuleEnablement.cmake | 2 +-
CMake/ITKModuleExternal.cmake | 17 +
CMake/ITKModuleInfo.cmake.in | 1 +
CMake/ITKModuleMacros.cmake | 55 +-
CMake/ITKModuleTest.cmake | 13 +-
CMake/UseITK.cmake | 143 +-
.../itkTargetLinkLibrariesWithDynamicLookup.cmake | 8 +-
CMakeLists.txt | 44 +-
CONTRIBUTING.md | 328 +++-
.../DigitallyReconstructedRadiograph1.cxx | 4 +-
.../DicomSliceReadPythonOutputBaseline.png.md5 | 2 +-
.../DicomSliceReadPythonOutputBaseline.png.sha512 | 2 +-
Examples/IO/test/CMakeLists.txt | 2 +-
Examples/Installation/CMakeLists.txt | 2 +-
Examples/RegistrationITKv3/BSplineWarping1.cxx | 4 +-
Examples/RegistrationITKv3/BSplineWarping2.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration12.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration13.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration14.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration15.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration16.cxx | 8 +-
.../RegistrationITKv3/DeformableRegistration17.cxx | 8 +-
.../RegistrationITKv3/DeformableRegistration2.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration3.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration5.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration7.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration8.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration1.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration10.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration11.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration12.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration13.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration14.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration15.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration16.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration17.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration18.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration19.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration2.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration20.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration3.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration4.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration5.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration6.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration7.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration8.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration9.cxx | 4 +-
.../RegistrationITKv3/IterativeClosestPoint1.cxx | 4 +-
.../ModelToImageRegistration1.cxx | 4 +-
.../ModelToImageRegistration2.cxx | 4 +-
.../MultiResImageRegistration1.cxx | 4 +-
.../MultiResImageRegistration2.cxx | 4 +-
.../MultiResImageRegistration3.cxx | 4 +-
.../MultiStageImageRegistration1.cxx | 2 +-
.../HoughTransform2DCirclesImageFilter.cxx | 16 +-
.../HoughTransform2DLinesImageFilter.cxx | 2 +-
Examples/Statistics/WeightedSampleStatistics.cxx | 2 +-
GettingStarted.md | 32 +
GettingStarted.txt | 29 -
ISSUE_TEMPLATE.md | 48 +
Modules/Bridge/VTK/include/itkVTKImageExportBase.h | 2 +-
.../Deprecated/include/itkBalloonForceFilter.h | 2 +-
.../Deprecated/include/itkDeformableMesh3DFilter.h | 2 +-
.../itkImageRegionMultidimensionalSplitter.h | 4 +-
.../include/itkNonThreadedShrinkImageFilter.h | 2 +-
.../Deprecated/include/itkReflectImageFilter.h | 2 +-
.../include/itkShiftScaleInPlaceImageFilter.h | 8 +-
.../itkTransformToDisplacementFieldSource.h | 8 +-
.../include/itkTwoOutputExampleImageFilter.h | 2 +-
.../include/itkAddConstantToImageFilter.h | 2 +-
.../itkDeformationFieldJacobianDeterminantFilter.h | 4 +-
.../include/itkDeformationFieldSource.h | 8 +-
.../include/itkDivideByConstantImageFilter.h | 2 +-
.../itkExponentialDeformationFieldImageFilter.h | 4 +-
.../include/itkGradientToMagnitudeImageFilter.h | 2 +-
.../include/itkImageToVectorImageFilter.h | 2 +-
.../itkInverseDeformationFieldImageFilter.h | 10 +-
...tkIterativeInverseDeformationFieldImageFilter.h | 4 +-
.../V3Compatibility/include/itkKernelFunction.h | 6 +-
.../include/itkMultiplyByConstantImageFilter.h | 2 +-
.../include/itkOtsuThresholdImageCalculator.h | 2 +-
.../include/itkSubtractConstantFromImageFilter.h | 2 +-
.../include/itkTransformToDeformationFieldSource.h | 10 +-
.../V3Compatibility/test/CMakeLists.txt | 2 +-
.../test/itkAddConstantToImageFilterTest.cxx | 93 +-
.../test/itkDivideByConstantImageFilterTest.cxx | 114 +-
...kExponentialDeformationFieldImageFilterTest.cxx | 4 +-
.../test/itkMultiplyByConstantImageFilterTest.cxx | 92 +-
.../itkSubtractConstantFromImageFilterTest.cxx | 93 +-
.../Common/CMake/itkCheckPrivateDynamicCast.cmake | 4 +-
Modules/Core/Common/ITKKWStyleOverwrite.txt | 1 +
.../include/compilers/ITK_COMPILER_INFO_MSVC_CXX.h | 2 +-
.../itkAtanRegularizedHeavisideStepFunction.h | 2 +-
.../include/itkAutoPointerDataObjectDecorator.h | 2 +-
.../include/itkBSplineDerivativeKernelFunction.h | 2 +-
.../itkBSplineInterpolationWeightFunction.h | 2 +-
.../Core/Common/include/itkBSplineKernelFunction.h | 2 +-
Modules/Core/Common/include/itkBarrier.h | 2 +-
.../Common/include/itkBinaryOperationConcept.h | 8 +-
.../include/itkBinaryThresholdSpatialFunction.h | 2 +-
Modules/Core/Common/include/itkBoundingBox.h | 2 +-
Modules/Core/Common/include/itkByteSwapper.h | 2 +-
Modules/Core/Common/include/itkCellInterface.h | 2 +-
.../Core/Common/include/itkCellInterfaceVisitor.h | 4 +-
Modules/Core/Common/include/itkCommand.h | 10 +-
Modules/Core/Common/include/itkConditionVariable.h | 2 +-
.../itkConicShellInteriorExteriorSpatialFunction.h | 2 +-
.../Core/Common/include/itkCreateObjectFunction.h | 2 +-
Modules/Core/Common/include/itkDataObject.h | 8 +-
.../Core/Common/include/itkDataObjectDecorator.h | 2 +-
Modules/Core/Common/include/itkDirectory.h | 2 +-
Modules/Core/Common/include/itkDomainThreader.h | 2 +-
Modules/Core/Common/include/itkDynamicLoader.h | 2 +-
.../itkEllipsoidInteriorExteriorSpatialFunction.h | 2 +-
Modules/Core/Common/include/itkEquivalencyTable.h | 2 +-
Modules/Core/Common/include/itkExceptionObject.h | 15 +-
.../Core/Common/include/itkExtractImageFilter.h | 2 +-
Modules/Core/Common/include/itkFastMutexLock.h | 2 +-
Modules/Core/Common/include/itkFileOutputWindow.h | 2 +-
.../include/itkFiniteCylinderSpatialFunction.h | 2 +-
.../Common/include/itkFrustumSpatialFunction.h | 2 +-
Modules/Core/Common/include/itkFunctionBase.h | 2 +-
.../include/itkGaussianDerivativeSpatialFunction.h | 2 +-
.../Common/include/itkGaussianKernelFunction.h | 2 +-
Modules/Core/Common/include/itkGaussianOperator.h | 4 +-
.../Common/include/itkGaussianSpatialFunction.h | 2 +-
.../Core/Common/include/itkHeavisideStepFunction.h | 2 +-
.../Common/include/itkHeavisideStepFunctionBase.h | 2 +-
Modules/Core/Common/include/itkHexahedronCell.h | 2 +-
Modules/Core/Common/include/itkImage.h | 2 +-
Modules/Core/Common/include/itkImageBase.h | 13 +-
Modules/Core/Common/include/itkImageBase.hxx | 13 +
Modules/Core/Common/include/itkImageDuplicator.h | 2 +-
Modules/Core/Common/include/itkImageIORegion.h | 2 +-
Modules/Core/Common/include/itkImageRegion.h | 2 +-
Modules/Core/Common/include/itkImageSource.h | 2 +-
.../Core/Common/include/itkImageToImageFilter.h | 2 +-
.../Common/include/itkImageToImageFilterDetail.h | 105 ++
Modules/Core/Common/include/itkImageTransformer.h | 2 +-
.../Core/Common/include/itkImportImageContainer.h | 2 +-
Modules/Core/Common/include/itkImportImageFilter.h | 2 +-
.../Core/Common/include/itkInPlaceImageFilter.h | 2 +-
.../include/itkInteriorExteriorSpatialFunction.h | 2 +-
.../Core/Common/include/itkKernelFunctionBase.h | 2 +-
Modules/Core/Common/include/itkLightObject.h | 2 +-
.../Core/Common/include/itkLightProcessObject.h | 2 +-
Modules/Core/Common/include/itkLineCell.h | 2 +-
Modules/Core/Common/include/itkLineIterator.h | 2 +-
Modules/Core/Common/include/itkLogger.h | 2 +-
Modules/Core/Common/include/itkLoggerBase.h | 2 +-
Modules/Core/Common/include/itkLoggerManager.h | 2 +-
Modules/Core/Common/include/itkLoggerOutput.h | 2 +-
.../Core/Common/include/itkLoggerThreadWrapper.h | 2 +-
Modules/Core/Common/include/itkMacro.h | 28 +-
Modules/Core/Common/include/itkMath.h | 4 +-
.../Common/include/itkMatrixResizeableDataObject.h | 2 +-
Modules/Core/Common/include/itkMemoryProbe.h | 2 +-
.../Core/Common/include/itkMemoryUsageObserver.h | 4 +-
.../itkMersenneTwisterRandomVariateGenerator.h | 16 +-
Modules/Core/Common/include/itkMetaDataObject.h | 5 +-
.../Core/Common/include/itkMetaDataObjectBase.h | 2 +-
.../include/itkMinimumMaximumImageCalculator.h | 2 +-
Modules/Core/Common/include/itkMultiThreader.h | 36 +-
Modules/Core/Common/include/itkMultipleLogOutput.h | 2 +-
Modules/Core/Common/include/itkMutexLock.h | 2 +-
.../Core/Common/include/itkNeighborhoodIterator.h | 113 +-
Modules/Core/Common/include/itkObject.h | 2 +-
Modules/Core/Common/include/itkObjectFactoryBase.h | 15 +-
Modules/Core/Common/include/itkObjectStore.h | 2 +-
Modules/Core/Common/include/itkOctree.h | 2 +-
Modules/Core/Common/include/itkOutputWindow.h | 2 +-
.../itkPhasedArray3DSpecialCoordinatesImage.h | 2 +-
Modules/Core/Common/include/itkPoint.hxx | 1 -
Modules/Core/Common/include/itkPointSet.h | 2 +-
.../Core/Common/include/itkPointSetToImageFilter.h | 2 +-
Modules/Core/Common/include/itkPolygonCell.h | 2 +-
.../Common/include/itkPriorityQueueContainer.h | 2 +-
Modules/Core/Common/include/itkProcessObject.h | 43 +-
.../Core/Common/include/itkProgressAccumulator.h | 2 +-
Modules/Core/Common/include/itkQuadraticEdgeCell.h | 2 +-
.../Core/Common/include/itkQuadraticTriangleCell.h | 2 +-
Modules/Core/Common/include/itkQuadrilateralCell.h | 2 +-
.../Common/include/itkRandomVariateGeneratorBase.h | 2 +-
Modules/Core/Common/include/itkRealTimeClock.h | 2 +-
Modules/Core/Common/include/itkResourceProbe.h | 11 +
Modules/Core/Common/include/itkResourceProbe.hxx | 114 +-
.../include/itkResourceProbesCollectorBase.h | 16 +-
.../include/itkResourceProbesCollectorBase.hxx | 77 +-
.../Common/include/itkSimpleDataObjectDecorator.h | 2 +-
.../itkSinRegularizedHeavisideStepFunction.h | 2 +-
Modules/Core/Common/include/itkSmapsFileParser.h | 4 +-
Modules/Core/Common/include/itkSparseFieldLayer.h | 2 +-
Modules/Core/Common/include/itkSparseImage.h | 2 +-
Modules/Core/Common/include/itkSpatialFunction.h | 2 +-
.../Common/include/itkSpecialCoordinatesImage.h | 2 +-
.../Core/Common/include/itkSphereSpatialFunction.h | 2 +-
.../Core/Common/include/itkStdStreamLogOutput.h | 2 +-
.../Core/Common/include/itkStoppingCriterionBase.h | 2 +-
.../Core/Common/include/itkStreamingImageFilter.h | 2 +-
.../Common/include/itkSymmetricEigenAnalysis.hxx | 94 +-
...etricEllipsoidInteriorExteriorSpatialFunction.h | 2 +-
Modules/Core/Common/include/itkTetrahedronCell.h | 2 +-
Modules/Core/Common/include/itkTextOutput.h | 2 +-
Modules/Core/Common/include/itkThreadJob.h | 66 +-
Modules/Core/Common/include/itkThreadLogger.h | 2 +-
Modules/Core/Common/include/itkThreadPool.h | 285 +---
Modules/Core/Common/include/itkThreadSupport.h | 4 +-
.../Common/include/itkThreadedDomainPartitioner.h | 2 +-
.../include/itkThreadedImageRegionPartitioner.h | 2 +-
.../itkThreadedIndexedContainerPartitioner.h | 2 +-
.../include/itkThreadedIteratorRangePartitioner.h | 2 +-
Modules/Core/Common/include/itkTimeProbe.h | 2 +-
.../itkTorusInteriorExteriorSpatialFunction.h | 2 +-
Modules/Core/Common/include/itkTreeChangeEvent.h | 2 +-
Modules/Core/Common/include/itkTreeContainer.h | 2 +-
Modules/Core/Common/include/itkTreeContainerBase.h | 2 +-
Modules/Core/Common/include/itkTreeNode.h | 2 +-
Modules/Core/Common/include/itkTriangleCell.h | 2 +-
.../Common/include/itkUnaryFunctorImageFilter.h | 2 +-
.../Common/include/itkUnaryFunctorImageFilter.hxx | 80 +-
.../Core/Common/include/itkVariableLengthVector.h | 108 +-
.../Common/include/itkVariableLengthVector.hxx | 26 +-
Modules/Core/Common/include/itkVectorImage.h | 2 +-
Modules/Core/Common/include/itkVersion.h | 2 +-
Modules/Core/Common/include/itkVersor.hxx | 2 +-
Modules/Core/Common/include/itkVertexCell.h | 2 +-
.../Core/Common/include/itkXMLFileOutputWindow.h | 2 +-
.../Core/Common/include/itk_compiler_detection.h | 4 +-
Modules/Core/Common/src/CMakeLists.txt | 4 +-
Modules/Core/Common/src/itkExceptionObject.cxx | 19 +-
.../Core/Common/src/itkFloatingPointExceptions.cxx | 4 +-
Modules/Core/Common/src/itkMetaDataObject.cxx | 2 +
Modules/Core/Common/src/itkMultiThreader.cxx | 188 +--
.../Core/Common/src/itkMultiThreaderNoThreads.cxx | 72 +-
.../Core/Common/src/itkMultiThreaderPThreads.cxx | 54 -
.../Core/Common/src/itkMultiThreaderWinThreads.cxx | 43 +-
Modules/Core/Common/src/itkObjectFactoryBase.cxx | 308 +++-
Modules/Core/Common/src/itkPThreadPool.cxx | 187 ---
Modules/Core/Common/src/itkProcessObject.cxx | 59 +-
Modules/Core/Common/src/itkThreadPool.cxx | 406 ++---
Modules/Core/Common/src/itkThreadPoolPosix.cxx | 154 ++
Modules/Core/Common/src/itkThreadPoolWin32.cxx | 126 ++
Modules/Core/Common/src/itkTimeStamp.cxx | 2 +-
Modules/Core/Common/src/itkWinThreadPool.cxx | 188 ---
Modules/Core/Common/test/CMakeLists.txt | 3 +-
Modules/Core/Common/test/itkBarrierTest.cxx | 25 +-
Modules/Core/Common/test/itkByteSwapTest.cxx | 26 +
Modules/Core/Common/test/itkColorTableTest.cxx | 2 +
.../test/itkDataObjectAndProcessObjectTest.cxx | 53 +
Modules/Core/Common/test/itkDataObjectTest.cxx | 2 +-
Modules/Core/Common/test/itkFactoryTestLib.cxx | 1 +
Modules/Core/Common/test/itkFilterDispatchTest.cxx | 2 +-
Modules/Core/Common/test/itkFixedArrayTest.cxx | 4 +
.../test/itkGaussianDerivativeOperatorTest.cxx | 7 +-
Modules/Core/Common/test/itkLightObjectTest.cxx | 2 +
.../Common/test/itkLoggerThreadWrapperTest.cxx | 2 +-
.../test/itkMemoryProbesCollecterBaseTest.cxx | 7 +-
Modules/Core/Common/test/itkMetaDataObjectTest.cxx | 2 +
Modules/Core/Common/test/itkObjectFactoryTest.cxx | 8 +-
Modules/Core/Common/test/itkObjectFactoryTest2.cxx | 1 +
Modules/Core/Common/test/itkPromoteType.cxx | 2 +
.../Common/test/itkSimpleFilterWatcherTest.cxx | 2 +-
Modules/Core/Common/test/itkTimeProbeTest2.cxx | 3 +
Modules/Core/Common/test/itkTimeProbesTest.cxx | 11 +
Modules/Core/Common/wrapping/ITKCommonBase.wrap | 6 +
.../wrapping/itkFloatingPointExceptions.wrap | 1 +
.../wrapping/itkImageConstIterator.notwrapped | 4 +-
.../itkImageConstIteratorWithIndex.notwrapped | 4 +-
.../Common/wrapping/itkImageIterator.notwrapped | 4 +-
.../wrapping/itkImageIteratorWithIndex.notwrapped | 4 +-
...itkImageLinearConstIteratorWithIndex.notwrapped | 4 +-
.../itkImageLinearIteratorWithIndex.notwrapped | 4 +-
...itkImageRandomConstIteratorWithIndex.notwrapped | 4 +-
.../itkImageRandomIteratorWithIndex.notwrapped | 4 +-
...omNonRepeatingConstIteratorWithIndex.notwrapped | 4 +-
...eRandomNonRepeatingIteratorWithIndex.notwrapped | 4 +-
.../itkImageRegionConstIterator.notwrapped | 4 +-
...itkImageRegionConstIteratorWithIndex.notwrapped | 4 +-
.../wrapping/itkImageRegionIterator.notwrapped | 4 +-
.../itkImageRegionIteratorWithIndex.notwrapped | 4 +-
.../include/itkDenseFiniteDifferenceImageFilter.h | 2 +-
.../include/itkFiniteDifferenceFunction.h | 2 +-
.../include/itkFiniteDifferenceImageFilter.h | 2 +-
.../include/itkFiniteDifferenceSparseImageFilter.h | 2 +-
.../itkFiniteDifferenceSparseImageFunction.h | 2 +-
Modules/Core/GPUCommon/include/itkGPUDataManager.h | 2 +-
Modules/Core/GPUCommon/include/itkGPUImage.h | 2 +-
.../GPUCommon/include/itkGPUImageDataManager.h | 2 +-
.../GPUCommon/include/itkGPUImageToImageFilter.h | 2 +-
.../GPUCommon/include/itkGPUInPlaceImageFilter.h | 2 +-
.../Core/GPUCommon/include/itkGPUKernelManager.h | 2 +-
Modules/Core/GPUCommon/include/itkGPUReduction.h | 2 +-
.../include/itkGPUUnaryFunctorImageFilter.h | 3 +-
Modules/Core/GPUCommon/src/itkGPUKernelManager.cxx | 4 +-
.../itkGPUDenseFiniteDifferenceImageFilter.h | 3 +-
.../include/itkGPUFiniteDifferenceFunction.h | 3 +-
.../include/itkGPUFiniteDifferenceImageFilter.h | 2 +-
.../ImageAdaptors/include/itkAbsImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkAcosImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkAddImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkAsinImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkAtanImageAdaptor.h | 2 +-
.../include/itkComplexConjugateImageAdaptor.h | 2 +-
.../include/itkComplexToImaginaryImageAdaptor.h | 2 +-
.../include/itkComplexToModulusImageAdaptor.h | 2 +-
.../include/itkComplexToPhaseImageAdaptor.h | 2 +-
.../include/itkComplexToRealImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkCosImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkExpImageAdaptor.h | 2 +-
.../include/itkExpNegativeImageAdaptor.h | 2 +-
.../Core/ImageAdaptors/include/itkImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkLog10ImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkLogImageAdaptor.h | 2 +-
.../include/itkNthElementImageAdaptor.h | 2 +-
.../include/itkRGBToLuminanceImageAdaptor.h | 2 +-
.../include/itkRGBToVectorImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkSinImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkSqrtImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkTanImageAdaptor.h | 2 +-
.../include/itkVectorImageToImageAdaptor.h | 2 +-
.../include/itkVectorToRGBImageAdaptor.h | 2 +-
.../include/itkBSplineDecompositionImageFilter.h | 2 +-
.../include/itkBSplineInterpolateImageFunction.h | 4 +-
.../include/itkBSplineResampleImageFunction.h | 2 +-
.../include/itkBinaryThresholdImageFunction.h | 2 +-
.../include/itkCentralDifferenceImageFunction.h | 2 +-
.../include/itkCovarianceImageFunction.h | 2 +-
.../include/itkExtrapolateImageFunction.h | 2 +-
.../include/itkGaussianBlurImageFunction.h | 2 +-
.../include/itkGaussianDerivativeImageFunction.h | 2 +-
.../include/itkGaussianInterpolateImageFunction.h | 32 +-
.../itkGaussianInterpolateImageFunction.hxx | 43 +-
.../Core/ImageFunction/include/itkImageFunction.h | 2 +-
.../include/itkInterpolateImageFunction.h | 2 +-
...itkLabelImageGaussianInterpolateImageFunction.h | 32 +-
...kLabelImageGaussianInterpolateImageFunction.hxx | 43 +-
.../include/itkLinearInterpolateImageFunction.h | 2 +-
.../itkMahalanobisDistanceThresholdImageFunction.h | 2 +-
.../ImageFunction/include/itkMeanImageFunction.h | 2 +-
.../ImageFunction/include/itkMedianImageFunction.h | 2 +-
.../itkNearestNeighborExtrapolateImageFunction.h | 2 +-
.../itkNearestNeighborInterpolateImageFunction.h | 2 +-
.../itkNeighborhoodBinaryThresholdImageFunction.h | 2 +-
.../include/itkNeighborhoodOperatorImageFunction.h | 2 +-
.../include/itkRayCastInterpolateImageFunction.h | 31 +-
.../include/itkRayCastInterpolateImageFunction.hxx | 14 +-
.../include/itkScatterMatrixImageFunction.h | 2 +-
.../include/itkSumOfSquaresImageFunction.h | 2 +-
.../include/itkVarianceImageFunction.h | 2 +-
.../include/itkVectorInterpolateImageFunction.h | 2 +-
.../itkVectorLinearInterpolateImageFunction.h | 2 +-
...polateNearestNeighborExtrapolateImageFunction.h | 2 +-
.../include/itkVectorMeanImageFunction.h | 2 +-
...VectorNearestNeighborInterpolateImageFunction.h | 2 +-
.../itkWindowedSincInterpolateImageFunction.h | 2 +-
.../itkRayCastInterpolateImageFunctionTest.cxx | 9 +-
.../Mesh/include/itkAutomaticTopologyMeshSource.h | 2 +-
.../Core/Mesh/include/itkBinaryMask3DMeshSource.h | 2 +-
.../Mesh/include/itkConnectedRegionsMeshFilter.h | 2 +-
Modules/Core/Mesh/include/itkImageToMeshFilter.h | 2 +-
.../Mesh/include/itkImageToParametricSpaceFilter.h | 2 +-
.../Mesh/include/itkInteriorExteriorMeshFilter.h | 2 +-
Modules/Core/Mesh/include/itkMesh.h | 2 +-
Modules/Core/Mesh/include/itkMeshRegion.h | 2 +-
Modules/Core/Mesh/include/itkMeshSource.h | 2 +-
Modules/Core/Mesh/include/itkMeshToMeshFilter.h | 2 +-
.../itkParametricSpaceToImageSpaceMeshFilter.h | 2 +-
.../Core/Mesh/include/itkRegularSphereMeshSource.h | 2 +-
Modules/Core/Mesh/include/itkSimplexMesh.h | 2 +-
.../include/itkSimplexMeshAdaptTopologyFilter.h | 2 +-
.../include/itkSimplexMeshToTriangleMeshFilter.h | 2 +-
.../Mesh/include/itkSimplexMeshVolumeCalculator.h | 2 +-
Modules/Core/Mesh/include/itkSphereMeshSource.h | 2 +-
Modules/Core/Mesh/include/itkTransformMeshFilter.h | 2 +-
.../include/itkTriangleMeshToBinaryImageFilter.h | 2 +-
.../include/itkTriangleMeshToSimplexMeshFilter.h | 2 +-
Modules/Core/Mesh/include/itkVTKPolyDataReader.h | 2 +-
Modules/Core/Mesh/include/itkVTKPolyDataWriter.h | 2 +-
Modules/Core/Mesh/include/itkWarpMeshFilter.h | 2 +-
Modules/Core/Mesh/test/CMakeLists.txt | 17 +
.../Mesh/test/itkMeshSourceGraftOutputTest.cxx | 2 +-
.../Core/QuadEdgeMesh/include/itkQuadEdgeMesh.h | 2 +-
...geMeshEulerOperatorCreateCenterVertexFunction.h | 2 +-
...geMeshEulerOperatorDeleteCenterVertexFunction.h | 2 +-
.../itkQuadEdgeMeshEulerOperatorFlipEdgeFunction.h | 2 +-
...itkQuadEdgeMeshEulerOperatorJoinFacetFunction.h | 2 +-
...tkQuadEdgeMeshEulerOperatorJoinVertexFunction.h | 2 +-
...itkQuadEdgeMeshEulerOperatorSplitEdgeFunction.h | 2 +-
...tkQuadEdgeMeshEulerOperatorSplitFacetFunction.h | 2 +-
...kQuadEdgeMeshEulerOperatorSplitVertexFunction.h | 2 +-
.../include/itkQuadEdgeMeshFunctionBase.h | 2 +-
.../QuadEdgeMesh/include/itkQuadEdgeMeshLineCell.h | 2 +-
.../include/itkQuadEdgeMeshPolygonCell.h | 2 +-
.../itkQuadEdgeMeshScalarDataVTKPolyDataWriter.h | 2 +-
.../include/itkQuadEdgeMeshToQuadEdgeMeshFilter.h | 2 +-
.../include/itkQuadEdgeMeshTopologyChecker.h | 2 +-
.../include/itkQuadEdgeMeshZipMeshFunction.h | 2 +-
.../include/itkAffineGeometryFrame.h | 2 +-
.../SpatialObjects/include/itkArrowSpatialObject.h | 2 +-
.../SpatialObjects/include/itkBlobSpatialObject.h | 2 +-
.../SpatialObjects/include/itkBoxSpatialObject.h | 2 +-
.../include/itkContourSpatialObject.h | 2 +-
.../include/itkContourSpatialObjectPoint.h | 2 +-
.../include/itkCylinderSpatialObject.h | 2 +-
.../include/itkDTITubeSpatialObject.h | 2 +-
.../include/itkDTITubeSpatialObjectPoint.h | 2 +-
.../include/itkEllipseSpatialObject.h | 2 +-
.../include/itkGaussianSpatialObject.h | 2 +-
.../SpatialObjects/include/itkGroupSpatialObject.h | 2 +-
.../include/itkImageMaskSpatialObject.h | 2 +-
.../SpatialObjects/include/itkImageSpatialObject.h | 2 +-
.../include/itkLandmarkSpatialObject.h | 2 +-
.../SpatialObjects/include/itkLineSpatialObject.h | 2 +-
.../include/itkLineSpatialObjectPoint.h | 2 +-
.../SpatialObjects/include/itkMeshSpatialObject.h | 2 +-
.../SpatialObjects/include/itkMetaArrowConverter.h | 2 +-
.../SpatialObjects/include/itkMetaBlobConverter.h | 2 +-
.../include/itkMetaContourConverter.h | 2 +-
.../include/itkMetaDTITubeConverter.h | 2 +-
.../include/itkMetaEllipseConverter.h | 2 +-
.../include/itkMetaGaussianConverter.h | 2 +-
.../SpatialObjects/include/itkMetaGroupConverter.h | 2 +-
.../SpatialObjects/include/itkMetaImageConverter.h | 2 +-
.../include/itkMetaImageMaskConverter.h | 2 +-
.../include/itkMetaLandmarkConverter.h | 2 +-
.../SpatialObjects/include/itkMetaLineConverter.h | 2 +-
.../SpatialObjects/include/itkMetaMeshConverter.h | 2 +-
.../include/itkMetaSurfaceConverter.h | 2 +-
.../SpatialObjects/include/itkMetaTubeConverter.h | 2 +-
.../include/itkMetaVesselTubeConverter.h | 2 +-
.../SpatialObjects/include/itkPlaneSpatialObject.h | 2 +-
.../include/itkPointBasedSpatialObject.h | 2 +-
.../include/itkPolygonGroupSpatialObject.h | 2 +-
.../SpatialObjects/include/itkSceneSpatialObject.h | 2 +-
.../Core/SpatialObjects/include/itkSpatialObject.h | 8 +-
.../SpatialObjects/include/itkSpatialObject.hxx | 17 +-
.../include/itkSpatialObjectDuplicator.h | 2 +-
.../include/itkSpatialObjectFactoryBase.h | 2 +-
.../include/itkSpatialObjectProperty.h | 2 +-
.../include/itkSpatialObjectToImageFilter.h | 2 +-
.../itkSpatialObjectToImageStatisticsCalculator.h | 2 +-
.../include/itkSpatialObjectToPointSetFilter.h | 2 +-
.../include/itkSpatialObjectTreeContainer.h | 2 +-
.../include/itkSpatialObjectTreeNode.h | 2 +-
.../include/itkSurfaceSpatialObject.h | 2 +-
.../include/itkSurfaceSpatialObjectPoint.h | 2 +-
.../SpatialObjects/include/itkTubeSpatialObject.h | 2 +-
.../include/itkTubeSpatialObjectPoint.h | 2 +-
.../include/itkVesselTubeSpatialObject.h | 2 +-
.../include/itkVesselTubeSpatialObjectPoint.h | 2 +-
.../test/itkNewMetaObjectTypeTest.cxx | 4 +-
Modules/Core/TestKernel/include/itkGTest.h | 41 +
.../Core/TestKernel/include/itkGTestPredicate.h | 100 ++
.../include/itkGTestTypedefsAndConstructors.h | 149 ++
.../Core/TestKernel/include/itkRandomImageSource.h | 2 +-
.../TestKernel/include/itkTestDriverAfterTest.inc | 10 +-
.../Core/TestKernel/include/itkTestDriverInclude.h | 174 +-
.../include/itkTestingComparisonImageFilter.h | 36 +-
.../include/itkTestingComparisonImageFilter.hxx | 78 +-
.../include/itkTestingExtractSliceImageFilter.h | 2 +-
.../itkTestingStretchIntensityImageFilter.h | 2 +-
.../itkTestingStretchIntensityImageFilter.hxx | 4 +-
Modules/Core/TestKernel/itk-module.cmake | 1 +
Modules/Core/TestKernel/src/CMakeLists.txt | 5 +-
Modules/Core/TestKernel/test/CMakeLists.txt | 10 +
Modules/Core/TestKernel/test/itkGoogleTest.cxx | 96 ++
.../Core/TestKernel/test/itkGoogleTestFixture.cxx | 44 +
.../Core/Transform/include/itkAffineTransform.h | 2 +-
.../itkAzimuthElevationToCartesianTransform.h | 2 +-
.../Transform/include/itkBSplineBaseTransform.h | 4 +-
.../include/itkBSplineDeformableTransform.h | 2 +-
.../Core/Transform/include/itkBSplineTransform.h | 2 +-
.../include/itkBSplineTransformInitializer.h | 2 +-
.../Transform/include/itkCenteredAffineTransform.h | 2 +-
.../include/itkCenteredEuler3DTransform.h | 2 +-
.../include/itkCenteredRigid2DTransform.h | 4 +-
.../include/itkCenteredSimilarity2DTransform.h | 2 +-
.../include/itkCenteredSimilarity2DTransform.hxx | 5 +
.../Core/Transform/include/itkCompositeTransform.h | 2 +-
.../Transform/include/itkCompositeTransform.hxx | 4 +-
...itkElasticBodyReciprocalSplineKernelTransform.h | 2 +-
.../include/itkElasticBodySplineKernelTransform.h | 2 +-
.../Core/Transform/include/itkEuler2DTransform.h | 2 +-
.../Core/Transform/include/itkEuler3DTransform.h | 4 +-
.../itkFixedCenterOfRotationAffineTransform.h | 2 +-
.../Core/Transform/include/itkIdentityTransform.h | 4 +-
.../Core/Transform/include/itkKernelTransform.h | 2 +-
.../include/itkMatrixOffsetTransformBase.h | 3 +-
Modules/Core/Transform/include/itkMultiTransform.h | 2 +-
.../Core/Transform/include/itkMultiTransform.hxx | 2 +-
.../include/itkQuaternionRigidTransform.h | 4 +-
.../Core/Transform/include/itkRigid2DTransform.h | 2 +-
.../include/itkRigid3DPerspectiveTransform.h | 2 +-
.../Core/Transform/include/itkRigid3DTransform.h | 4 +-
.../Transform/include/itkScalableAffineTransform.h | 2 +-
.../include/itkScaleLogarithmicTransform.h | 2 +-
.../include/itkScaleSkewVersor3DTransform.h | 4 +-
Modules/Core/Transform/include/itkScaleTransform.h | 2 +-
.../Transform/include/itkScaleVersor3DTransform.h | 2 +-
.../Transform/include/itkSimilarity2DTransform.h | 4 +-
.../Transform/include/itkSimilarity2DTransform.hxx | 5 +
.../Transform/include/itkSimilarity3DTransform.h | 4 +-
.../itkThinPlateR2LogRSplineKernelTransform.h | 2 +-
.../include/itkThinPlateSplineKernelTransform.h | 2 +-
Modules/Core/Transform/include/itkTransform.h | 4 +-
Modules/Core/Transform/include/itkTransformBase.h | 2 +-
.../Transform/include/itkTranslationTransform.h | 2 +-
.../Transform/include/itkVersorRigid3DTransform.h | 4 +-
.../Core/Transform/include/itkVersorTransform.h | 6 +-
.../include/itkVolumeSplineKernelTransform.h | 2 +-
.../Core/Transform/test/itkMultiTransformTest.cxx | 21 +-
.../Transform/test/itkRigid3DTransformTest.cxx | 2 +-
.../test/itkSimilarity2DTransformTest.cxx | 13 +
.../include/itkAnisotropicDiffusionFunction.h | 4 +-
.../include/itkAnisotropicDiffusionImageFilter.h | 2 +-
.../itkCurvatureAnisotropicDiffusionImageFilter.h | 2 +-
.../itkCurvatureNDAnisotropicDiffusionFunction.h | 2 +-
.../itkGradientAnisotropicDiffusionImageFilter.h | 4 +-
.../itkGradientNDAnisotropicDiffusionFunction.h | 2 +-
.../itkScalarAnisotropicDiffusionFunction.h | 2 +-
.../itkVectorAnisotropicDiffusionFunction.h | 2 +-
...ectorCurvatureAnisotropicDiffusionImageFilter.h | 2 +-
...VectorCurvatureNDAnisotropicDiffusionFunction.h | 2 +-
...VectorGradientAnisotropicDiffusionImageFilter.h | 2 +-
...kVectorGradientNDAnisotropicDiffusionFunction.h | 2 +-
.../include/itkAntiAliasBinaryImageFilter.h | 4 +-
.../include/itkCompositeValleyFunction.h | 2 +-
.../BiasCorrection/include/itkMRASlabIdentifier.h | 2 +-
.../include/itkMRIBiasFieldCorrectionFilter.h | 10 +-
.../include/itkMRIBiasFieldCorrectionFilter.hxx | 2 -
.../include/itkN4BiasFieldCorrectionImageFilter.h | 5 +-
.../itkN4BiasFieldCorrectionImageFilter.hxx | 47 +-
.../itkBinaryClosingByReconstructionImageFilter.h | 2 +-
.../include/itkBinaryDilateImageFilter.h | 2 +-
.../include/itkBinaryErodeImageFilter.h | 2 +-
.../itkBinaryMorphologicalClosingImageFilter.h | 2 +-
.../itkBinaryMorphologicalOpeningImageFilter.h | 2 +-
.../include/itkBinaryMorphologyImageFilter.h | 2 +-
.../itkBinaryOpeningByReconstructionImageFilter.h | 2 +-
.../include/itkBinaryPruningImageFilter.h | 2 +-
.../include/itkBinaryThinningImageFilter.h | 2 +-
.../include/itkDilateObjectMorphologyImageFilter.h | 2 +-
.../include/itkErodeObjectMorphologyImageFilter.h | 2 +-
.../itkFastIncrementalBinaryDilateImageFilter.h | 2 +-
.../include/itkObjectMorphologyImageFilter.h | 2 +-
.../Colormap/include/itkAutumnColormapFunction.h | 2 +-
.../Colormap/include/itkBlueColormapFunction.h | 2 +-
.../Colormap/include/itkColormapFunction.h | 2 +-
.../Colormap/include/itkCoolColormapFunction.h | 2 +-
.../Colormap/include/itkCopperColormapFunction.h | 2 +-
.../Colormap/include/itkCustomColormapFunction.h | 2 +-
.../Colormap/include/itkGreenColormapFunction.h | 2 +-
.../Colormap/include/itkGreyColormapFunction.h | 2 +-
.../Colormap/include/itkHSVColormapFunction.h | 2 +-
.../Colormap/include/itkHotColormapFunction.h | 2 +-
.../Colormap/include/itkJetColormapFunction.h | 2 +-
.../include/itkOverUnderColormapFunction.h | 2 +-
.../Colormap/include/itkRedColormapFunction.h | 2 +-
.../include/itkScalarToRGBColormapImageFilter.h | 2 +-
.../Colormap/include/itkSpringColormapFunction.h | 2 +-
.../Colormap/include/itkSummerColormapFunction.h | 2 +-
.../Colormap/include/itkWinterColormapFunction.h | 2 +-
.../include/itkConvolutionImageFilter.h | 2 +-
.../include/itkConvolutionImageFilterBase.h | 2 +-
.../include/itkFFTConvolutionImageFilter.h | 2 +-
.../itkFFTNormalizedCorrelationImageFilter.h | 8 +-
.../itkMaskedFFTNormalizedCorrelationImageFilter.h | 55 +-
.../include/itkNormalizedCorrelationImageFilter.h | 2 +-
.../include/itkBinaryMinMaxCurvatureFlowFunction.h | 2 +-
.../itkBinaryMinMaxCurvatureFlowImageFilter.h | 2 +-
.../include/itkCurvatureFlowFunction.h | 2 +-
.../include/itkCurvatureFlowImageFilter.h | 2 +-
.../include/itkMinMaxCurvatureFlowFunction.h | 2 +-
.../include/itkMinMaxCurvatureFlowImageFilter.h | 2 +-
.../CurvatureFlow/test/itkCurvatureFlowTest.cxx | 2 +-
.../include/itkInverseDeconvolutionImageFilter.h | 2 +-
.../include/itkIterativeDeconvolutionImageFilter.h | 2 +-
.../include/itkLandweberDeconvolutionImageFilter.h | 2 +-
...tricBlindLeastSquaresDeconvolutionImageFilter.h | 2 +-
...itkProjectedIterativeDeconvolutionImageFilter.h | 2 +-
...itkProjectedLandweberDeconvolutionImageFilter.h | 2 +-
.../itkRichardsonLucyDeconvolutionImageFilter.h | 2 +-
.../include/itkTikhonovDeconvolutionImageFilter.h | 2 +-
.../include/itkWienerDeconvolutionImageFilter.h | 2 +-
...erGaussianKernelNonNullImageOriginTest.nrrd.md5 | 1 +
...aussianKernelNonNullImageOriginTest.nrrd.sha512 | 1 +
.../Filtering/Deconvolution/test/CMakeLists.txt | 3 +-
...indLeastSquaresDeconvolutionImageFilterTest.cxx | 2 +-
.../itkPatchBasedDenoisingBaseImageFilter.h | 2 +-
.../include/itkPatchBasedDenoisingImageFilter.h | 2 +-
...itkDiffusionTensor3DReconstructionImageFilter.h | 2 +-
.../itkTensorFractionalAnisotropyImageFilter.h | 2 +-
.../itkTensorRelativeAnisotropyImageFilter.h | 2 +-
.../itkBSplineExponentialDiffeomorphicTransform.h | 2 +-
...neSmoothingOnUpdateDisplacementFieldTransform.h | 2 +-
.../itkComposeDisplacementFieldsImageFilter.h | 2 +-
.../include/itkConstantVelocityFieldTransform.h | 2 +-
...itkDisplacementFieldJacobianDeterminantFilter.h | 2 +-
.../itkDisplacementFieldToBSplineImageFilter.h | 2 +-
.../include/itkDisplacementFieldTransform.h | 2 +-
.../itkExponentialDisplacementFieldImageFilter.h | 2 +-
.../itkGaussianExponentialDiffeomorphicTransform.h | 2 +-
...anSmoothingOnUpdateDisplacementFieldTransform.h | 2 +-
...hingOnUpdateTimeVaryingVelocityFieldTransform.h | 2 +-
.../itkInverseDisplacementFieldImageFilter.h | 2 +-
.../itkInvertDisplacementFieldImageFilter.h | 2 +-
...kIterativeInverseDisplacementFieldImageFilter.h | 2 +-
.../include/itkLandmarkDisplacementFieldSource.h | 2 +-
.../itkTimeVaryingBSplineVelocityFieldTransform.h | 2 +-
...imeVaryingVelocityFieldIntegrationImageFilter.h | 2 +-
.../include/itkTimeVaryingVelocityFieldTransform.h | 2 +-
.../itkTransformToDisplacementFieldFilter.h | 2 +-
.../itkTransformToDisplacementFieldFilter.hxx | 4 +-
.../include/itkVelocityFieldTransform.h | 2 +-
.../itkApproximateSignedDistanceMapImageFilter.h | 4 +-
.../itkContourDirectedMeanDistanceImageFilter.h | 2 +-
.../include/itkContourMeanDistanceImageFilter.h | 2 +-
.../include/itkDanielssonDistanceMapImageFilter.h | 2 +-
.../itkDirectedHausdorffDistanceImageFilter.h | 2 +-
.../include/itkFastChamferDistanceImageFilter.h | 2 +-
.../include/itkHausdorffDistanceImageFilter.h | 2 +-
.../include/itkIsoContourDistanceImageFilter.h | 2 +-
.../itkSignedDanielssonDistanceMapImageFilter.h | 2 +-
.../itkSignedMaurerDistanceMapImageFilter.h | 2 +-
.../itkSignedMaurerDistanceMapImageFilter.hxx | 8 +-
...ApproximateSignedDistanceMapImageFilterTest.cxx | 153 +-
.../Filtering/FFT/include/itkFFTPadImageFilter.h | 2 +-
.../Filtering/FFT/include/itkFFTShiftImageFilter.h | 4 +-
.../include/itkFullToHalfHermitianImageFilter.h | 2 +-
.../include/itkHalfToFullHermitianImageFilter.h | 2 +-
.../include/itkVnlComplexToComplexFFTImageFilter.h | 2 +-
.../FFT/include/itkVnlForwardFFTImageFilter.h | 2 +-
...tkVnlHalfHermitianToRealInverseFFTImageFilter.h | 2 +-
.../FFT/include/itkVnlInverseFFTImageFilter.h | 2 +-
...tkVnlRealToHalfHermitianForwardFFTImageFilter.h | 2 +-
.../FastMarching/include/itkFastMarchingBase.h | 6 +-
.../include/itkFastMarchingExtensionImageFilter.h | 2 +-
.../itkFastMarchingExtensionImageFilterBase.h | 2 +-
.../include/itkFastMarchingImageFilter.h | 4 +-
.../include/itkFastMarchingImageFilterBase.h | 29 +-
.../include/itkFastMarchingImageFilterBase.hxx | 259 ++-
...tkFastMarchingImageToNodePairContainerAdaptor.h | 2 +-
...FastMarchingNumberOfElementsStoppingCriterion.h | 2 +-
.../itkFastMarchingQuadEdgeMeshFilterBase.h | 2 +-
...stMarchingReachedTargetNodesStoppingCriterion.h | 2 +-
.../include/itkFastMarchingStoppingCriterionBase.h | 2 +-
.../itkFastMarchingThresholdStoppingCriterion.h | 2 +-
.../itkFastMarchingUpwindGradientImageFilter.h | 2 +-
.../itkFastMarchingUpwindGradientImageFilterBase.h | 2 +-
.../FastMarching/test/itkFastMarchingBaseTest.cxx | 2 +-
.../itkFastMarchingStoppingCriterionBaseTest.cxx | 2 +-
.../include/itkGPUAnisotropicDiffusionFunction.h | 3 +-
.../itkGPUAnisotropicDiffusionImageFilter.h | 6 +-
...itkGPUGradientAnisotropicDiffusionImageFilter.h | 3 +-
.../itkGPUGradientNDAnisotropicDiffusionFunction.h | 3 +-
.../itkGPUScalarAnisotropicDiffusionFunction.h | 3 +-
.../include/itkGPUBoxImageFilter.h | 3 +-
.../itkGPUNeighborhoodOperatorImageFilter.h | 3 +-
.../include/itkGPUDiscreteGaussianImageFilter.h | 3 +-
.../GPUSmoothing/include/itkGPUMeanImageFilter.h | 2 +-
.../include/itkGPUBinaryThresholdImageFilter.h | 3 +-
.../itkAbsoluteValueDifferenceImageFilter.h | 2 +-
.../include/itkCheckerBoardImageFilter.h | 2 +-
.../ImageCompare/include/itkSTAPLEImageFilter.h | 2 +-
.../include/itkSimilarityIndexImageFilter.h | 2 +-
.../include/itkSquaredDifferenceImageFilter.h | 2 +-
Modules/Filtering/ImageCompare/test/CMakeLists.txt | 2 +-
.../itkAbsoluteValueDifferenceImageFilterTest.cxx | 2 +-
.../ImageCompare/test/itkSTAPLEImageFilterTest.cxx | 2 +-
.../test/itkSquaredDifferenceImageFilterTest.cxx | 2 +-
.../test/itkTestingComparisonImageFilterTest.cxx | 84 +-
.../ImageCompose/include/itkJoinImageFilter.h | 2 +-
.../include/itkJoinSeriesImageFilter.h | 2 +-
.../ImageFeature/include/itkBilateralImageFilter.h | 2 +-
.../include/itkCannyEdgeDetectionImageFilter.h | 2 +-
.../include/itkDerivativeImageFilter.h | 2 +-
.../include/itkGradientVectorFlowImageFilter.h | 2 +-
.../itkHessian3DToVesselnessMeasureImageFilter.h | 2 +-
.../itkHessianRecursiveGaussianImageFilter.h | 2 +-
.../itkHessianToObjectnessMeasureImageFilter.h | 2 +-
.../itkHoughTransform2DCirclesImageFilter.h | 40 +-
.../itkHoughTransform2DCirclesImageFilter.hxx | 230 ++-
.../include/itkHoughTransform2DLinesImageFilter.h | 9 +-
.../itkHoughTransform2DLinesImageFilter.hxx | 216 +--
.../ImageFeature/include/itkLaplacianImageFilter.h | 2 +-
.../itkLaplacianRecursiveGaussianImageFilter.h | 2 +-
.../include/itkLaplacianSharpeningImageFilter.h | 2 +-
.../include/itkMaskFeaturePointSelectionFilter.h | 4 +-
.../include/itkMaskFeaturePointSelectionFilter.hxx | 2 +-
.../include/itkSimpleContourExtractorImageFilter.h | 4 +-
.../include/itkSobelEdgeDetectionImageFilter.h | 2 +-
.../include/itkUnsharpMaskImageFilter.h | 2 +-
.../itkZeroCrossingBasedEdgeDetectionImageFilter.h | 2 +-
.../include/itkZeroCrossingImageFilter.h | 2 +-
.../test/itkHoughTransform2DCirclesImageTest.cxx | 265 ++-
.../test/itkHoughTransform2DLinesImageTest.cxx | 94 +-
.../include/itkBinaryFunctorImageFilter.h | 2 +-
.../ImageFilterBase/include/itkBoxImageFilter.h | 2 +-
.../ImageFilterBase/include/itkCastImageFilter.h | 16 +-
.../ImageFilterBase/include/itkCastImageFilter.hxx | 32 +
.../ImageFilterBase/include/itkKernelImageFilter.h | 2 +-
.../itkMaskNeighborhoodOperatorImageFilter.h | 2 +-
.../include/itkMovingHistogramImageFilter.h | 2 +-
.../include/itkMovingHistogramImageFilterBase.h | 2 +-
.../include/itkNeighborhoodOperatorImageFilter.h | 2 +-
.../ImageFilterBase/include/itkNoiseImageFilter.h | 2 +-
.../include/itkNullImageToImageFilterDriver.hxx | 4 +-
.../include/itkRecursiveSeparableImageFilter.h | 2 +-
.../include/itkTernaryFunctorImageFilter.h | 2 +-
.../include/itkVectorCastImageFilter.h | 2 +-
.../itkVectorNeighborhoodOperatorImageFilter.h | 2 +-
.../include/itkLabelMapContourOverlayImageFilter.h | 2 +-
.../include/itkLabelMapOverlayImageFilter.h | 2 +-
.../include/itkLabelMapToRGBImageFilter.h | 2 +-
.../include/itkLabelOverlayImageFilter.h | 2 +-
.../ImageFusion/include/itkLabelToRGBImageFilter.h | 2 +-
.../itkDifferenceOfGaussiansGradientImageFilter.h | 2 +-
.../ImageGradient/include/itkGradientImageFilter.h | 4 +-
.../include/itkGradientMagnitudeImageFilter.h | 2 +-
...GradientMagnitudeRecursiveGaussianImageFilter.h | 2 +-
.../itkGradientRecursiveGaussianImageFilter.h | 4 +-
.../itkVectorGradientMagnitudeImageFilter.h | 2 +-
.../itkBSplineCenteredL2ResampleImageFilterBase.h | 2 +-
.../itkBSplineCenteredResampleImageFilterBase.h | 2 +-
.../include/itkBSplineControlPointImageFilter.h | 2 +-
.../include/itkBSplineControlPointImageFunction.h | 2 +-
.../include/itkBSplineDownsampleImageFilter.h | 2 +-
.../include/itkBSplineL2ResampleImageFilterBase.h | 2 +-
.../include/itkBSplineResampleImageFilterBase.h | 2 +-
.../include/itkBSplineResampleImageFilterBase.hxx | 4 +-
.../itkBSplineScatteredDataPointSetToImageFilter.h | 2 +-
.../include/itkBSplineUpsampleImageFilter.h | 2 +-
.../ImageGrid/include/itkBinShrinkImageFilter.hxx | 18 +-
.../ImageGrid/include/itkConstantPadImageFilter.h | 2 +-
.../include/itkCoxDeBoorBSplineKernelFunction.h | 2 +-
.../ImageGrid/include/itkCropImageFilter.h | 2 +-
.../ImageGrid/include/itkCyclicShiftImageFilter.h | 2 +-
.../ImageGrid/include/itkExpandImageFilter.h | 2 +-
.../ImageGrid/include/itkExpandImageFilter.hxx | 23 +-
.../ImageGrid/include/itkFlipImageFilter.h | 4 +-
.../ImageGrid/include/itkInterpolateImageFilter.h | 2 +-
.../ImageGrid/include/itkMirrorPadImageFilter.h | 2 +-
.../ImageGrid/include/itkOrientImageFilter.h | 2 +-
.../ImageGrid/include/itkPadImageFilter.h | 2 +-
.../ImageGrid/include/itkPadImageFilterBase.h | 2 +-
.../ImageGrid/include/itkPasteImageFilter.h | 2 +-
.../ImageGrid/include/itkPermuteAxesImageFilter.h | 2 +-
.../include/itkRegionOfInterestImageFilter.h | 2 +-
.../ImageGrid/include/itkResampleImageFilter.h | 3 +-
.../ImageGrid/include/itkShrinkImageFilter.h | 2 +-
.../ImageGrid/include/itkShrinkImageFilter.hxx | 21 +-
.../ImageGrid/include/itkSliceBySliceImageFilter.h | 4 +-
.../include/itkSliceBySliceImageFilter.hxx | 39 +-
.../ImageGrid/include/itkSliceImageFilter.h | 166 ++
.../ImageGrid/include/itkSliceImageFilter.hxx | 346 ++++
.../include/itkVectorResampleImageFilter.h | 2 +-
.../ImageGrid/include/itkWarpImageFilter.h | 8 +-
.../ImageGrid/include/itkWarpImageFilter.hxx | 57 +-
.../ImageGrid/include/itkWarpVectorImageFilter.h | 2 +-
.../ImageGrid/include/itkWrapPadImageFilter.h | 2 +-
.../include/itkZeroFluxNeumannPadImageFilter.h | 2 +-
.../test/Baseline/ResampleImageTest5.png.md5 | 2 +-
.../test/Baseline/ResampleImageTest5.png.sha512 | 2 +-
.../test/Baseline/ResampleImageTest6.png.md5 | 2 +-
.../test/Baseline/ResampleImageTest6.png.sha512 | 2 +-
Modules/Filtering/ImageGrid/test/CMakeLists.txt | 4 +
.../test/itkBinShrinkImageFilterTest1.cxx | 10 +-
.../test/itkSliceBySliceImageFilterTest.cxx | 11 +-
.../ImageGrid/test/itkSliceImageFilterTest.cxx | 370 +++++
.../wrapping/itkRegionOfInterestImageFilter.wrap | 7 +
.../ImageIntensity/include/itkAbsImageFilter.h | 2 +-
.../ImageIntensity/include/itkAcosImageFilter.h | 2 +-
.../ImageIntensity/include/itkAdaptImageFilter.h | 2 +-
.../ImageIntensity/include/itkAddImageFilter.h | 31 +-
.../ImageIntensity/include/itkAndImageFilter.h | 31 +-
.../include/itkArithmeticOpsFunctors.h | 392 +++++
.../ImageIntensity/include/itkAsinImageFilter.h | 2 +-
.../ImageIntensity/include/itkAtan2ImageFilter.h | 2 +-
.../ImageIntensity/include/itkAtanImageFilter.h | 2 +-
.../include/itkBinaryMagnitudeImageFilter.h | 2 +-
.../ImageIntensity/include/itkBitwiseOpsFunctors.h | 139 ++
.../include/itkBoundedReciprocalImageFilter.h | 2 +-
.../ImageIntensity/include/itkClampImageFilter.h | 2 +-
.../include/itkComplexToImaginaryImageFilter.h | 2 +-
.../include/itkComplexToModulusImageFilter.h | 2 +-
.../include/itkComplexToPhaseImageFilter.h | 2 +-
.../include/itkComplexToRealImageFilter.h | 2 +-
.../itkConstrainedValueAdditionImageFilter.h | 2 +-
.../itkConstrainedValueDifferenceImageFilter.h | 2 +-
.../ImageIntensity/include/itkCosImageFilter.h | 2 +-
.../ImageIntensity/include/itkDivideImageFilter.h | 38 +-
.../include/itkDivideOrZeroOutImageFilter.h | 42 +-
.../include/itkEdgePotentialImageFilter.h | 2 +-
.../ImageIntensity/include/itkExpImageFilter.h | 2 +-
.../include/itkExpNegativeImageFilter.h | 2 +-
.../include/itkHistogramMatchingImageFilter.h | 2 +-
.../include/itkIntensityWindowingImageFilter.h | 4 +-
.../include/itkInvertIntensityImageFilter.h | 2 +-
.../ImageIntensity/include/itkLog10ImageFilter.h | 2 +-
.../ImageIntensity/include/itkLogImageFilter.h | 2 +-
.../ImageIntensity/include/itkLogicOpsFunctors.h | 102 +-
.../itkMagnitudeAndPhaseToComplexImageFilter.h | 2 +-
.../ImageIntensity/include/itkMaskImageFilter.h | 2 +-
.../include/itkMaskNegatedImageFilter.h | 2 +-
.../include/itkMatrixIndexSelectionImageFilter.h | 2 +-
.../ImageIntensity/include/itkMaximumImageFilter.h | 2 +-
.../ImageIntensity/include/itkMinimumImageFilter.h | 2 +-
.../ImageIntensity/include/itkModulusImageFilter.h | 83 +-
.../include/itkMultiplyImageFilter.h | 30 +-
.../ImageIntensity/include/itkNaryAddImageFilter.h | 2 +-
.../include/itkNaryFunctorImageFilter.h | 2 +-
.../include/itkNaryMaximumImageFilter.h | 2 +-
.../include/itkNormalizeToConstantImageFilter.h | 2 +-
.../ImageIntensity/include/itkNotImageFilter.h | 82 +-
.../ImageIntensity/include/itkOrImageFilter.h | 32 +-
.../include/itkPolylineMask2DImageFilter.h | 2 +-
.../include/itkPolylineMaskImageFilter.h | 2 +-
.../include/itkRGBToLuminanceImageFilter.h | 2 +-
.../include/itkRescaleIntensityImageFilter.h | 4 +-
.../ImageIntensity/include/itkRoundImageFilter.h | 2 +-
.../include/itkShiftScaleImageFilter.h | 4 +-
.../ImageIntensity/include/itkSigmoidImageFilter.h | 4 +-
.../ImageIntensity/include/itkSinImageFilter.h | 2 +-
.../ImageIntensity/include/itkSqrtImageFilter.h | 2 +-
.../ImageIntensity/include/itkSquareImageFilter.h | 2 +-
.../include/itkSubtractImageFilter.h | 30 +-
.../include/itkSymmetricEigenAnalysisImageFilter.h | 2 +-
.../ImageIntensity/include/itkTanImageFilter.h | 2 +-
.../include/itkTernaryAddImageFilter.h | 29 +-
.../include/itkTernaryMagnitudeImageFilter.h | 2 +-
.../itkTernaryMagnitudeSquaredImageFilter.h | 2 +-
.../include/itkTernaryOperatorImageFilter.h | 40 +-
.../include/itkVectorExpandImageFilter.h | 2 +-
.../itkVectorIndexSelectionCastImageFilter.h | 2 +-
.../include/itkVectorMagnitudeImageFilter.h | 2 +-
.../include/itkVectorRescaleIntensityImageFilter.h | 4 +-
.../include/itkWeightedAddImageFilter.h | 2 +-
.../ImageIntensity/include/itkXorImageFilter.h | 32 +-
Modules/Filtering/ImageIntensity/itk-module.cmake | 1 +
.../Filtering/ImageIntensity/test/CMakeLists.txt | 16 +
.../test/itkArithmeticOpsFunctorsTest.cxx | 91 +
.../test/itkBitwiseOpsFunctorsTest.cxx | 39 +
.../Filtering/ImageIntensity/test/itkEqualTest.cxx | 4 +
.../ImageIntensity/test/itkNotImageFilterTest.cxx | 10 +-
.../include/itkBinaryContourImageFilter.h | 2 +-
.../ImageLabel/include/itkChangeLabelImageFilter.h | 2 +-
.../include/itkLabelContourImageFilter.h | 2 +-
.../include/itkAdditiveGaussianNoiseImageFilter.h | 3 +-
.../itkAdditiveGaussianNoiseImageFilter.hxx | 2 +-
.../ImageNoise/include/itkNoiseBaseImageFilter.h | 2 +-
.../include/itkSaltAndPepperNoiseImageFilter.h | 3 +-
.../ImageNoise/include/itkShotNoiseImageFilter.h | 3 +-
.../ImageNoise/include/itkShotNoiseImageFilter.hxx | 2 +-
.../include/itkSpeckleNoiseImageFilter.h | 3 +-
.../test/itkPeakSignalToNoiseRatioCalculator.h | 3 +-
.../ImageSources/include/itkGaborKernelFunction.h | 2 +-
.../include/itkGenerateImageSource.hxx | 3 +-
.../include/itkParametricImageSource.h | 2 +-
.../include/itkPhysicalPointImageSource.h | 2 +-
.../include/itkAccumulateImageFilter.h | 2 +-
.../itkAdaptiveHistogramEqualizationImageFilter.h | 2 +-
.../include/itkBinaryProjectionImageFilter.h | 2 +-
.../include/itkGetAverageSliceImageFilter.h | 2 +-
.../include/itkHistogramAlgorithmBase.h | 2 +-
.../include/itkImageMomentsCalculator.h | 2 +-
.../include/itkImagePCADecompositionCalculator.h | 2 +-
.../include/itkImagePCAShapeModelEstimator.h | 2 +-
.../include/itkImageShapeModelEstimatorBase.h | 2 +-
.../include/itkLabelOverlapMeasuresImageFilter.h | 2 +-
.../include/itkLabelStatisticsImageFilter.h | 6 +-
.../include/itkMaximumProjectionImageFilter.h | 2 +-
.../include/itkMeanProjectionImageFilter.h | 2 +-
.../include/itkMedianProjectionImageFilter.h | 2 +-
.../include/itkMinimumMaximumImageFilter.h | 2 +-
.../include/itkMinimumProjectionImageFilter.h | 2 +-
.../include/itkProjectionImageFilter.h | 2 +-
.../include/itkProjectionImageFilter.hxx | 2 +-
.../itkStandardDeviationProjectionImageFilter.h | 2 +-
.../include/itkStatisticsImageFilter.h | 2 +-
.../include/itkSumProjectionImageFilter.h | 2 +-
.../test/itkMaximumProjectionImageFilterTest2.cxx | 3 +
.../LabelMap/include/itkAggregateLabelMapFilter.h | 2 +-
.../itkAttributeKeepNObjectsLabelMapFilter.h | 2 +-
.../include/itkAttributeOpeningLabelMapFilter.h | 2 +-
.../include/itkAttributePositionLabelMapFilter.h | 2 +-
.../include/itkAttributeRelabelLabelMapFilter.h | 2 +-
.../include/itkAttributeSelectionLabelMapFilter.h | 2 +-
.../include/itkAttributeUniqueLabelMapFilter.h | 2 +-
.../LabelMap/include/itkAutoCropLabelMapFilter.h | 2 +-
.../include/itkBinaryFillholeImageFilter.h | 2 +-
.../include/itkBinaryGrindPeakImageFilter.h | 2 +-
.../include/itkBinaryImageToLabelMapFilter.h | 2 +-
.../include/itkBinaryImageToLabelMapFilter.hxx | 6 +-
.../include/itkBinaryImageToShapeLabelMapFilter.h | 2 +-
.../itkBinaryImageToStatisticsLabelMapFilter.h | 2 +-
.../LabelMap/include/itkBinaryNotImageFilter.h | 2 +-
.../itkBinaryReconstructionByDilationImageFilter.h | 2 +-
.../itkBinaryReconstructionByErosionImageFilter.h | 2 +-
.../itkBinaryReconstructionLabelMapFilter.h | 2 +-
.../itkBinaryShapeKeepNObjectsImageFilter.h | 2 +-
.../include/itkBinaryShapeOpeningImageFilter.h | 2 +-
.../itkBinaryStatisticsKeepNObjectsImageFilter.h | 2 +-
.../itkBinaryStatisticsOpeningImageFilter.h | 2 +-
.../include/itkChangeLabelLabelMapFilter.h | 9 +-
.../include/itkChangeRegionLabelMapFilter.h | 2 +-
.../LabelMap/include/itkConvertLabelMapFilter.h | 2 +-
.../LabelMap/include/itkCropLabelMapFilter.h | 2 +-
.../LabelMap/include/itkInPlaceLabelMapFilter.h | 2 +-
.../include/itkLabelImageToLabelMapFilter.h | 2 +-
.../include/itkLabelImageToShapeLabelMapFilter.h | 2 +-
.../itkLabelImageToStatisticsLabelMapFilter.h | 2 +-
Modules/Filtering/LabelMap/include/itkLabelMap.h | 2 +-
.../Filtering/LabelMap/include/itkLabelMapFilter.h | 2 +-
.../LabelMap/include/itkLabelMapMaskImageFilter.h | 2 +-
.../include/itkLabelMapToAttributeImageFilter.h | 2 +-
.../include/itkLabelMapToBinaryImageFilter.h | 2 +-
.../include/itkLabelMapToLabelImageFilter.h | 2 +-
.../include/itkLabelSelectionLabelMapFilter.h | 2 +-
.../include/itkLabelShapeKeepNObjectsImageFilter.h | 2 +-
.../include/itkLabelShapeOpeningImageFilter.h | 2 +-
.../itkLabelStatisticsKeepNObjectsImageFilter.h | 2 +-
.../include/itkLabelStatisticsOpeningImageFilter.h | 2 +-
.../include/itkLabelUniqueLabelMapFilter.h | 2 +-
.../LabelMap/include/itkMergeLabelMapFilter.h | 2 +-
.../include/itkObjectByObjectLabelMapFilter.h | 2 +-
.../LabelMap/include/itkPadLabelMapFilter.h | 2 +-
.../include/itkRegionFromReferenceLabelMapFilter.h | 2 +-
.../LabelMap/include/itkRelabelLabelMapFilter.h | 2 +-
.../include/itkShapeKeepNObjectsLabelMapFilter.h | 2 +-
.../LabelMap/include/itkShapeLabelMapFilter.h | 2 +-
.../LabelMap/include/itkShapeLabelMapFilter.hxx | 73 +-
.../LabelMap/include/itkShapeLabelObject.h | 10 +-
.../include/itkShapeOpeningLabelMapFilter.h | 2 +-
.../include/itkShapePositionLabelMapFilter.h | 2 +-
.../LabelMap/include/itkShapeRelabelImageFilter.h | 2 +-
.../include/itkShapeRelabelLabelMapFilter.h | 2 +-
.../include/itkShapeUniqueLabelMapFilter.h | 2 +-
.../LabelMap/include/itkShiftScaleLabelMapFilter.h | 2 +-
.../itkStatisticsKeepNObjectsLabelMapFilter.h | 2 +-
.../LabelMap/include/itkStatisticsLabelMapFilter.h | 2 +-
.../include/itkStatisticsOpeningLabelMapFilter.h | 2 +-
.../include/itkStatisticsPositionLabelMapFilter.h | 2 +-
.../include/itkStatisticsRelabelImageFilter.h | 2 +-
.../include/itkStatisticsRelabelLabelMapFilter.h | 2 +-
.../include/itkStatisticsUniqueLabelMapFilter.h | 2 +-
Modules/Filtering/LabelMap/itk-module.cmake | 1 +
Modules/Filtering/LabelMap/test/CMakeLists.txt | 9 +-
.../test/itkBinaryImageToLabelMapFilterTest2.cxx | 3 +
.../itkLabelImageToShapeLabelMapFilterTest2.cxx | 162 --
.../LabelMap/test/itkShapeLabelMapFilterGTest.cxx | 453 +++++
.../test/itkShapeLabelObjectAccessorsTest1.cxx | 18 +
.../include/itkAnchorCloseImageFilter.h | 2 +-
.../include/itkAnchorDilateImageFilter.h | 2 +-
.../include/itkAnchorErodeDilateImageFilter.h | 2 +-
.../include/itkAnchorErodeImageFilter.h | 2 +-
.../include/itkAnchorOpenCloseImageFilter.h | 2 +-
.../include/itkAnchorOpenImageFilter.h | 2 +-
.../include/itkBasicDilateImageFilter.h | 2 +-
.../include/itkBasicErodeImageFilter.h | 2 +-
.../include/itkBlackTopHatImageFilter.h | 2 +-
.../itkClosingByReconstructionImageFilter.h | 2 +-
.../include/itkDoubleThresholdImageFilter.h | 2 +-
.../include/itkFlatStructuringElement.h | 2 +-
.../itkGrayscaleConnectedClosingImageFilter.h | 2 +-
.../itkGrayscaleConnectedOpeningImageFilter.h | 2 +-
.../include/itkGrayscaleDilateImageFilter.h | 2 +-
.../include/itkGrayscaleErodeImageFilter.h | 2 +-
.../include/itkGrayscaleFillholeImageFilter.h | 2 +-
.../itkGrayscaleFunctionDilateImageFilter.h | 2 +-
.../include/itkGrayscaleFunctionErodeImageFilter.h | 2 +-
.../itkGrayscaleGeodesicDilateImageFilter.h | 2 +-
.../include/itkGrayscaleGeodesicErodeImageFilter.h | 2 +-
.../include/itkGrayscaleGrindPeakImageFilter.h | 2 +-
.../itkGrayscaleMorphologicalClosingImageFilter.h | 2 +-
.../itkGrayscaleMorphologicalOpeningImageFilter.h | 2 +-
.../include/itkHConcaveImageFilter.h | 2 +-
.../include/itkHConvexImageFilter.h | 2 +-
.../include/itkHMaximaImageFilter.h | 2 +-
.../include/itkHMinimaImageFilter.h | 2 +-
.../include/itkMaskedMovingHistogramImageFilter.h | 181 ++
.../itkMaskedMovingHistogramImageFilter.hxx | 0
.../include/itkMaskedRankImageFilter.h | 140 ++
.../include/itkMaskedRankImageFilter.hxx | 0
.../include/itkMorphologicalGradientImageFilter.h | 2 +-
.../include/itkMorphologyImageFilter.h | 2 +-
.../include/itkMovingHistogramDilateImageFilter.h | 2 +-
.../include/itkMovingHistogramErodeImageFilter.h | 2 +-
...vingHistogramMorphologicalGradientImageFilter.h | 2 +-
.../itkMovingHistogramMorphologyImageFilter.h | 2 +-
.../itkOpeningByReconstructionImageFilter.h | 2 +-
.../include/itkRankHistogram.h | 402 +++++
.../include/itkRankImageFilter.h | 143 ++
.../include/itkRankImageFilter.hxx | 0
.../itkReconstructionByDilationImageFilter.h | 2 +-
.../itkReconstructionByErosionImageFilter.h | 2 +-
.../include/itkReconstructionImageFilter.h | 2 +-
.../include/itkRegionalMaximaImageFilter.h | 2 +-
.../include/itkRegionalMinimaImageFilter.h | 2 +-
.../include/itkValuedRegionalExtremaImageFilter.h | 4 +-
.../include/itkValuedRegionalMaximaImageFilter.h | 2 +-
.../include/itkValuedRegionalMinimaImageFilter.h | 2 +-
.../include/itkVanHerkGilWermanDilateImageFilter.h | 2 +-
.../itkVanHerkGilWermanErodeDilateImageFilter.h | 2 +-
.../include/itkVanHerkGilWermanErodeImageFilter.h | 2 +-
.../include/itkWhiteTopHatImageFilter.h | 2 +-
...gByReconstructionImageFilterTestNoInput.png.md5 | 2 +-
...ReconstructionImageFilterTestNoInput.png.sha512 | 2 +-
...ByReconstructionImageFilterTestNoInput2.png.md5 | 2 +-
...econstructionImageFilterTestNoInput2.png.sha512 | 2 +-
.../cthead1RegionalMaximal-ref1.png.sha512 | 1 +
.../cthead1RegionalMaximal-ref2.png.sha512 | 1 +
.../cthead1RegionalMaximal-ref2_1.png.sha512 | 1 -
.../cthead1RegionalMaximal-ref2_2.png.sha512 | 1 -
.../cthead1RegionalMinimal-ref1.png.sha512 | 1 +
.../cthead1RegionalMinimal-ref2.png.sha512 | 1 +
.../cthead1RegionalMinimal-ref2_1.png.sha512 | 1 -
.../cthead1RegionalMinimal-ref2_2.png.sha512 | 1 -
.../Baseline}/itkMaskedRankImageFilter10.png.md5 | 0
.../itkMaskedRankImageFilter10.png.sha512 | 0
.../Baseline}/itkMaskedRankImageFilter3.png.md5 | 0
.../Baseline}/itkMaskedRankImageFilter3.png.sha512 | 0
.../test/Baseline}/itkRankImageFilter10.png.md5 | 0
.../test/Baseline}/itkRankImageFilter10.png.sha512 | 0
.../test/Baseline}/itkRankImageFilter3.png.md5 | 0
.../test/Baseline}/itkRankImageFilter3.png.sha512 | 0
.../MathematicalMorphology/test/CMakeLists.txt | 44 +
.../test/itkMapMaskedRankImageFilterTest.cxx | 0
.../test/itkMapRankImageFilterTest.cxx | 0
.../test/itkMaskedRankImageFilterTest.cxx | 0
.../test/itkRankImageFilterTest.cxx | 0
Modules/Filtering/Path/include/itkChainCodePath.h | 2 +-
.../Filtering/Path/include/itkChainCodePath2D.h | 2 +-
.../itkChainCodeToFourierSeriesPathFilter.h | 2 +-
.../itkExtractOrthogonalSwath2DImageFilter.h | 2 +-
.../Filtering/Path/include/itkFourierSeriesPath.h | 2 +-
Modules/Filtering/Path/include/itkHilbertPath.h | 2 +-
.../Path/include/itkImageAndPathToImageFilter.h | 2 +-
.../Path/include/itkOrthogonalSwath2DPathFilter.h | 2 +-
.../itkOrthogonallyCorrected2DParametricPath.h | 2 +-
Modules/Filtering/Path/include/itkParametricPath.h | 2 +-
Modules/Filtering/Path/include/itkPath.h | 2 +-
.../Path/include/itkPathAndImageToPathFilter.h | 2 +-
Modules/Filtering/Path/include/itkPathIterator.h | 2 +-
Modules/Filtering/Path/include/itkPathSource.h | 2 +-
.../Path/include/itkPathToChainCodePathFilter.h | 2 +-
.../Filtering/Path/include/itkPathToImageFilter.h | 2 +-
.../Filtering/Path/include/itkPathToPathFilter.h | 2 +-
.../Path/include/itkPolyLineParametricPath.h | 2 +-
.../include/itkBorderQuadEdgeMeshFilter.h | 2 +-
.../include/itkCleanQuadEdgeMeshFilter.h | 2 +-
.../include/itkDecimationQuadEdgeMeshFilter.h | 2 +-
.../itkDelaunayConformingQuadEdgeMeshFilter.h | 2 +-
.../itkDiscreteCurvatureQuadEdgeMeshFilter.h | 2 +-
...tkDiscreteGaussianCurvatureQuadEdgeMeshFilter.h | 2 +-
...itkDiscreteMaximumCurvatureQuadEdgeMeshFilter.h | 2 +-
.../itkDiscreteMeanCurvatureQuadEdgeMeshFilter.h | 2 +-
...itkDiscreteMinimumCurvatureQuadEdgeMeshFilter.h | 2 +-
...DiscretePrincipalCurvaturesQuadEdgeMeshFilter.h | 2 +-
.../include/itkEdgeDecimationQuadEdgeMeshFilter.h | 2 +-
.../itkLaplacianDeformationQuadEdgeMeshFilter.h | 2 +-
...ormationQuadEdgeMeshFilterWithHardConstraints.h | 2 +-
...ormationQuadEdgeMeshFilterWithSoftConstraints.h | 2 +-
.../include/itkNormalQuadEdgeMeshFilter.h | 2 +-
.../itkParameterizationQuadEdgeMeshFilter.h | 2 +-
.../include/itkQuadEdgeMeshDecimationCriteria.h | 6 +-
.../itkQuadricDecimationQuadEdgeMeshFilter.h | 2 +-
.../include/itkSmoothingQuadEdgeMeshFilter.h | 2 +-
...SquaredEdgeLengthDecimationQuadEdgeMeshFilter.h | 2 +-
.../Smoothing/include/itkBinomialBlurImageFilter.h | 2 +-
.../Smoothing/include/itkBoxMeanImageFilter.h | 2 +-
.../Smoothing/include/itkBoxSigmaImageFilter.h | 2 +-
.../include/itkDiscreteGaussianImageFilter.h | 2 +-
.../Smoothing/include/itkMeanImageFilter.h | 2 +-
.../Smoothing/include/itkMedianImageFilter.h | 2 +-
.../include/itkRecursiveGaussianImageFilter.h | 2 +-
.../itkSmoothingRecursiveGaussianImageFilter.h | 81 +-
.../itkSmoothingRecursiveGaussianImageFilter.hxx | 36 +-
Modules/Filtering/Smoothing/test/CMakeLists.txt | 7 +-
...tkSmoothingRecursiveGaussianImageFilterTest.cxx | 274 +--
.../itkSpatialFunctionImageEvaluatorFilter.h | 2 +-
.../include/itkBinaryThresholdImageFilter.h | 2 +-
.../itkBinaryThresholdProjectionImageFilter.h | 2 +-
.../include/itkHistogramThresholdCalculator.h | 2 +-
.../include/itkHistogramThresholdImageFilter.h | 17 +-
.../include/itkHistogramThresholdImageFilter.hxx | 7 +-
.../include/itkHuangThresholdCalculator.h | 2 +-
.../include/itkHuangThresholdImageFilter.h | 2 +-
.../include/itkIntermodesThresholdCalculator.h | 2 +-
.../include/itkIntermodesThresholdImageFilter.h | 2 +-
.../include/itkIsoDataThresholdCalculator.h | 2 +-
.../include/itkIsoDataThresholdImageFilter.h | 2 +-
.../itkKappaSigmaThresholdImageCalculator.h | 2 +-
.../include/itkKappaSigmaThresholdImageFilter.h | 2 +-
.../itkKittlerIllingworthThresholdCalculator.h | 2 +-
.../itkKittlerIllingworthThresholdImageFilter.h | 2 +-
.../include/itkLiThresholdCalculator.h | 2 +-
.../include/itkLiThresholdImageFilter.h | 2 +-
.../include/itkMaximumEntropyThresholdCalculator.h | 2 +-
.../itkMaximumEntropyThresholdImageFilter.h | 2 +-
.../include/itkMomentsThresholdCalculator.h | 2 +-
.../include/itkMomentsThresholdImageFilter.h | 2 +-
.../include/itkOtsuMultipleThresholdsCalculator.h | 2 +-
.../include/itkOtsuMultipleThresholdsImageFilter.h | 2 +-
.../include/itkOtsuThresholdCalculator.h | 2 +-
.../include/itkOtsuThresholdImageFilter.h | 2 +-
.../include/itkRenyiEntropyThresholdCalculator.h | 2 +-
.../include/itkRenyiEntropyThresholdImageFilter.h | 2 +-
.../include/itkShanbhagThresholdCalculator.h | 2 +-
.../include/itkShanbhagThresholdImageFilter.h | 2 +-
.../Thresholding/include/itkThresholdImageFilter.h | 2 +-
.../include/itkThresholdLabelerImageFilter.h | 2 +-
.../include/itkTriangleThresholdCalculator.h | 2 +-
.../include/itkTriangleThresholdImageFilter.h | 2 +-
.../include/itkYenThresholdCalculator.h | 2 +-
.../include/itkYenThresholdImageFilter.h | 2 +-
.../itkHuangThresholdImageFilterTestShort.png.md5 | 2 +-
...tkHuangThresholdImageFilterTestShort.png.sha512 | 2 +-
...IntermodesThresholdImageFilterTestShort.png.md5 | 2 +-
...ermodesThresholdImageFilterTestShort.png.sha512 | 2 +-
...itkIsoDataThresholdImageFilterTestShort.png.md5 | 2 +-
...IsoDataThresholdImageFilterTestShort.png.sha512 | 2 +-
...llingworthThresholdImageFilterTestShort.png.md5 | 2 +-
...ngworthThresholdImageFilterTestShort.png.sha512 | 2 +-
.../itkLiThresholdImageFilterTestShort.png.md5 | 2 +-
.../itkLiThresholdImageFilterTestShort.png.sha512 | 2 +-
...mumEntropyThresholdImageFilterTestShort.png.md5 | 2 +-
...EntropyThresholdImageFilterTestShort.png.sha512 | 2 +-
...itkMomentsThresholdImageFilterTestShort.png.md5 | 2 +-
...MomentsThresholdImageFilterTestShort.png.sha512 | 2 +-
.../itkOtsuThresholdImageFilterTestShort.png.md5 | 2 +-
...itkOtsuThresholdImageFilterTestShort.png.sha512 | 2 +-
...nyiEntropyThresholdImageFilterTestShort.png.md5 | 2 +-
...EntropyThresholdImageFilterTestShort.png.sha512 | 2 +-
...tkShanbhagThresholdImageFilterTestShort.png.md5 | 2 +-
...hanbhagThresholdImageFilterTestShort.png.sha512 | 2 +-
...tkTriangleThresholdImageFilterTestShort.png.md5 | 2 +-
...riangleThresholdImageFilterTestShort.png.sha512 | 2 +-
.../itkYenThresholdImageFilterTestShort.png.md5 | 2 +-
.../itkYenThresholdImageFilterTestShort.png.sha512 | 2 +-
Modules/IO/BMP/include/itkBMPImageIO.h | 2 +-
Modules/IO/BMP/include/itkBMPImageIOFactory.h | 2 +-
Modules/IO/BMP/itk-module.cmake | 2 +
Modules/IO/BioRad/include/itkBioRadImageIO.h | 2 +-
.../IO/BioRad/include/itkBioRadImageIOFactory.h | 2 +-
Modules/IO/BioRad/itk-module.cmake | 2 +
Modules/IO/Bruker/CMakeLists.txt | 3 +
Modules/IO/Bruker/include/itkBruker2dseqImageIO.h | 139 ++
.../Bruker/include/itkBruker2dseqImageIOFactory.h | 76 +
Modules/IO/Bruker/itk-module.cmake | 12 +
Modules/IO/Bruker/src/CMakeLists.txt | 6 +
Modules/IO/Bruker/src/itkBruker2dseqImageIO.cxx | 930 +++++++++++
.../IO/Bruker/src/itkBruker2dseqImageIOFactory.cxx | 71 +
.../Bruker/test/Baseline/PV5.1_FSE_INT16.mha.md5 | 1 +
.../test/Baseline/PV5.1_FSE_INT16.mha.sha512 | 1 +
.../test/Baseline/PV6.0_FLASH_FLOAT32.mha.md5 | 1 +
.../test/Baseline/PV6.0_FLASH_FLOAT32.mha.sha512 | 1 +
.../Bruker/test/Baseline/PV6.0_FLASH_INT16.mha.md5 | 1 +
.../test/Baseline/PV6.0_FLASH_INT16.mha.sha512 | 1 +
.../Bruker/test/Baseline/PV6.0_FLASH_UINT8.mha.md5 | 1 +
.../test/Baseline/PV6.0_FLASH_UINT8.mha.sha512 | 1 +
Modules/IO/Bruker/test/CMakeLists.txt | 46 +
.../IO/Bruker/test/Input/PV5.1_FSE/.DS_Store.md5 | 1 +
.../Bruker/test/Input/PV5.1_FSE/.DS_Store.sha512 | 1 +
.../test/Input/PV5.1_FSE/pdata/.DS_Store.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/.DS_Store.sha512 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/2dseq.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/2dseq.sha512 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/d3proc.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/d3proc.sha512 | 1 +
.../IO/Bruker/test/Input/PV5.1_FSE/pdata/1/id.md5 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/id.sha512 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/meta.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/meta.sha512 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/procs.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/procs.sha512 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/reco.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/reco.sha512 | 1 +
.../IO/Bruker/test/Input/PV5.1_FSE/pdata/1/roi.md5 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/roi.sha512 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/visu_pars.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/visu_pars.sha512 | 1 +
.../test/Input/PV6.0_FLASH/AdjStatePerScan.md5 | 1 +
.../test/Input/PV6.0_FLASH/AdjStatePerScan.sha512 | 1 +
Modules/IO/Bruker/test/Input/PV6.0_FLASH/acqp.md5 | 1 +
.../IO/Bruker/test/Input/PV6.0_FLASH/acqp.sha512 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/configscan.md5 | 1 +
.../test/Input/PV6.0_FLASH/configscan.sha512 | 1 +
.../IO/Bruker/test/Input/PV6.0_FLASH/method.md5 | 1 +
.../IO/Bruker/test/Input/PV6.0_FLASH/method.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/1/2dseq.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/1/2dseq.sha512 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/pdata/1/id.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/1/id.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/1/methreco.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/1/methreco.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/1/procs.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/1/procs.sha512 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/pdata/1/reco.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/1/reco.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/1/visu_pars.md5 | 1 +
.../Input/PV6.0_FLASH/pdata/1/visu_pars.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/2/2dseq.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/2/2dseq.sha512 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/pdata/2/id.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/2/id.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/2/methreco.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/2/methreco.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/2/procs.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/2/procs.sha512 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/pdata/2/reco.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/2/reco.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/2/visu_pars.md5 | 1 +
.../Input/PV6.0_FLASH/pdata/2/visu_pars.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/2dseq.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/2dseq.sha512 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/pdata/3/id.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/id.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/methreco.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/methreco.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/procs.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/procs.sha512 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/pdata/3/reco.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/reco.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/visu_pars.md5 | 1 +
.../Input/PV6.0_FLASH/pdata/3/visu_pars.sha512 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/pulseprogram.md5 | 1 +
.../test/Input/PV6.0_FLASH/pulseprogram.sha512 | 1 +
.../IO/Bruker/test/Input/PV6.0_FLASH/specpar.md5 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/specpar.sha512 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/uxnmr.info.md5 | 1 +
.../test/Input/PV6.0_FLASH/uxnmr.info.sha512 | 1 +
.../IO/Bruker/test/Input/PV6.0_FLASH/uxnmr.par.md5 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/uxnmr.par.sha512 | 1 +
.../IO/Bruker/test/Input/PV6.0_FLASH/visu_pars.md5 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/visu_pars.sha512 | 1 +
Modules/IO/Bruker/test/itkBrukerImageTest.cxx | 75 +
Modules/IO/Bruker/wrapping/CMakeLists.txt | 3 +
.../IO/Bruker/wrapping/itkBruker2dseqImageIO.wrap | 2 +
Modules/IO/CSV/include/itkCSVArray2DDataObject.h | 2 +-
Modules/IO/CSV/include/itkCSVArray2DFileReader.h | 2 +-
Modules/IO/CSV/include/itkCSVFileReaderBase.h | 2 +-
.../IO/CSV/include/itkCSVNumericObjectFileWriter.h | 2 +-
Modules/IO/DCMTK/include/itkDCMTKImageIO.h | 22 +
Modules/IO/DCMTK/itk-module.cmake | 2 +
Modules/IO/DCMTK/src/itkDCMTKFileReader.cxx | 85 +-
Modules/IO/DCMTK/src/itkDCMTKImageIO.cxx | 81 +-
Modules/IO/DCMTK/test/CMakeLists.txt | 22 +-
Modules/IO/DCMTK/test/itkDCMTKRGBImageIOTest.cxx | 81 +
.../IO/DCMTK/test/itkDCMTKSeriesReadImageWrite.cxx | 2 +-
Modules/IO/GDCM/include/itkGDCMImageIO.h | 2 +-
Modules/IO/GDCM/include/itkGDCMImageIOFactory.h | 2 +-
Modules/IO/GDCM/include/itkGDCMSeriesFileNames.h | 2 +-
Modules/IO/GDCM/itk-module.cmake | 2 +
.../Baseline/itkGDCMImageIOTest2Baseline.mha.md5 | 2 +-
.../itkGDCMImageIOTest2Baseline.mha.sha512 | 2 +-
.../itkGDCMImageIOTest2RescaledBaseline.mha.md5 | 2 +-
.../itkGDCMImageIOTest2RescaledBaseline.mha.sha512 | 2 +-
.../Baseline/itkGDCMImageIOTest3Baseline.mha.md5 | 2 +-
.../itkGDCMImageIOTest3Baseline.mha.sha512 | 2 +-
.../itkGDCMImageIOTest3RescaledBaseline.mha.md5 | 2 +-
.../itkGDCMImageIOTest3RescaledBaseline.mha.sha512 | 2 +-
.../Baseline/itkGDCMImageIOTest4Baseline.mha.md5 | 2 +-
.../itkGDCMImageIOTest4Baseline.mha.sha512 | 2 +-
.../itkGDCMImageIOTest4RescaledBaseline.mha.md5 | 2 +-
.../itkGDCMImageIOTest4RescaledBaseline.mha.sha512 | 2 +-
.../Baseline/itkGDCMImageIOTestBaseline.mha.md5 | 2 +-
.../Baseline/itkGDCMImageIOTestBaseline.mha.sha512 | 2 +-
.../itkGDCMImageIOTestRescaledBaseline.mha.md5 | 2 +-
.../itkGDCMImageIOTestRescaledBaseline.mha.sha512 | 2 +-
Modules/IO/GE/include/Ge4xHdr.h | 326 ----
Modules/IO/GE/include/Ge5xHdr.h | 855 ----------
Modules/IO/GE/include/itkGE4ImageIO.h | 2 +-
Modules/IO/GE/include/itkGE4ImageIOFactory.h | 2 +-
Modules/IO/GE/include/itkGE5ImageIO.h | 5 +-
Modules/IO/GE/include/itkGE5ImageIOFactory.h | 2 +-
Modules/IO/GE/include/itkGEAdwImageIO.h | 2 +-
Modules/IO/GE/include/itkGEAdwImageIOFactory.h | 2 +-
Modules/IO/GE/itk-module.cmake | 6 +-
Modules/IO/GE/src/Ge4xHdr.h | 326 ++++
Modules/IO/GE/src/Ge5xHdr.h | 855 ++++++++++
Modules/IO/GE/src/itkGE5ImageIO.cxx | 8 +-
Modules/IO/GE/test/CMakeLists.txt | 2 +
Modules/IO/GIPL/include/itkGiplImageIO.h | 2 +-
Modules/IO/GIPL/include/itkGiplImageIOFactory.h | 2 +-
Modules/IO/GIPL/itk-module.cmake | 2 +
Modules/IO/HDF5/include/itkHDF5ImageIO.h | 6 +-
Modules/IO/HDF5/include/itkHDF5ImageIOFactory.h | 2 +-
Modules/IO/HDF5/itk-module.cmake | 2 +
Modules/IO/HDF5/src/itkHDF5ImageIO.cxx | 151 +-
.../test/itkHDF5ImageIOStreamingReadWriteTest.cxx | 2 +-
Modules/IO/HDF5/test/itkHDF5ImageIOTest.cxx | 28 +
Modules/IO/IPL/include/itkIPLCommonImageIO.h | 2 +-
.../include/itkArchetypeSeriesFileNames.h | 2 +-
Modules/IO/ImageBase/include/itkIOTestHelper.h | 14 +
Modules/IO/ImageBase/include/itkImageFileReader.h | 2 +-
.../IO/ImageBase/include/itkImageFileReader.hxx | 4 +
.../include/itkImageFileReaderException.h | 2 +-
Modules/IO/ImageBase/include/itkImageFileWriter.h | 4 +-
Modules/IO/ImageBase/include/itkImageIOBase.h | 6 +-
Modules/IO/ImageBase/include/itkImageIOFactory.h | 2 +-
.../IO/ImageBase/include/itkImageSeriesReader.h | 2 +-
.../IO/ImageBase/include/itkImageSeriesWriter.h | 4 +-
.../ImageBase/include/itkNumericSeriesFileNames.h | 2 +-
.../include/itkRegularExpressionSeriesFileNames.h | 2 +-
.../ImageBase/src/itkImageFileReaderException.cxx | 2 +-
Modules/IO/ImageBase/src/itkImageFileWriter.cxx | 2 +-
Modules/IO/ImageBase/src/itkImageIOBase.cxx | 50 +
Modules/IO/ImageBase/src/itkImageSeriesWriter.cxx | 2 +-
Modules/IO/ImageBase/test/CMakeLists.txt | 16 +
Modules/IO/ImageBase/test/Input/Test64bit.mha.md5 | 1 +
.../IO/ImageBase/test/Input/Test64bit.mha.sha512 | 1 +
Modules/IO/ImageBase/test/Input/Test64bit.nrrd.md5 | 1 +
.../IO/ImageBase/test/Input/Test64bit.nrrd.sha512 | 1 +
Modules/IO/ImageBase/test/itk64bitTest.cxx | 101 ++
Modules/IO/ImageBase/test/itkImageIOBaseTest.cxx | 3 +-
Modules/IO/JPEG/include/itkJPEGImageIO.h | 2 +-
Modules/IO/JPEG/include/itkJPEGImageIOFactory.h | 2 +-
Modules/IO/JPEG/itk-module.cmake | 2 +
Modules/IO/LSM/include/itkLSMImageIO.h | 2 +-
Modules/IO/LSM/include/itkLSMImageIOFactory.h | 2 +-
Modules/IO/LSM/itk-module.cmake | 2 +
Modules/IO/LSM/test/CMakeLists.txt | 3 +-
Modules/IO/MINC/include/itkMINCImageIO.h | 44 +-
Modules/IO/MINC/include/itkMINCImageIOFactory.h | 2 +-
Modules/IO/MINC/itk-module.cmake | 4 +-
Modules/IO/MINC/src/itkMINCImageIO.cxx | 393 +++--
Modules/IO/MINC/test/CMakeLists.txt | 385 +----
Modules/IO/MINC/wrapping/CMakeLists.txt | 3 +
Modules/IO/MINC/wrapping/itkMINCImageIO.wrap | 2 +
Modules/IO/MRC/include/itkMRCHeaderObject.h | 2 +-
Modules/IO/MRC/include/itkMRCImageIOFactory.h | 2 +-
Modules/IO/MRC/itk-module.cmake | 2 +
Modules/IO/MRC/src/itkMRCImageIO.cxx | 2 +-
Modules/IO/MRC/src/itkMRCImageIOPrivate.h | 2 +-
Modules/IO/Mesh/include/itkBYUMeshIO.h | 2 +-
Modules/IO/Mesh/include/itkBYUMeshIOFactory.h | 2 +-
Modules/IO/Mesh/include/itkFreeSurferAsciiMeshIO.h | 2 +-
.../Mesh/include/itkFreeSurferAsciiMeshIOFactory.h | 2 +-
.../IO/Mesh/include/itkFreeSurferBinaryMeshIO.h | 2 +-
.../include/itkFreeSurferBinaryMeshIOFactory.h | 2 +-
Modules/IO/Mesh/include/itkGiftiMeshIO.h | 16 +-
Modules/IO/Mesh/include/itkGiftiMeshIOFactory.h | 2 +-
Modules/IO/Mesh/include/itkMeshFileReader.h | 2 +-
.../IO/Mesh/include/itkMeshFileReaderException.h | 2 +-
Modules/IO/Mesh/include/itkMeshFileWriter.h | 2 +-
.../IO/Mesh/include/itkMeshFileWriterException.h | 2 +-
Modules/IO/Mesh/include/itkMeshIOBase.h | 2 +-
Modules/IO/Mesh/include/itkMeshIOFactory.h | 2 +-
Modules/IO/Mesh/include/itkOBJMeshIO.h | 4 +-
Modules/IO/Mesh/include/itkOBJMeshIOFactory.h | 2 +-
Modules/IO/Mesh/include/itkOFFMeshIO.h | 2 +-
Modules/IO/Mesh/include/itkOFFMeshIOFactory.h | 2 +-
Modules/IO/Mesh/include/itkVTKPolyDataMeshIO.h | 5 +-
.../IO/Mesh/include/itkVTKPolyDataMeshIOFactory.h | 2 +-
Modules/IO/Mesh/src/itkGiftiMeshIO.cxx | 29 +-
Modules/IO/Mesh/src/itkMeshFileReaderException.cxx | 2 +-
Modules/IO/Mesh/src/itkMeshFileWriterException.cxx | 2 +-
Modules/IO/Mesh/src/itkMeshIOBase.cxx | 2 +-
Modules/IO/Mesh/src/itkOBJMeshIO.cxx | 81 +-
Modules/IO/Mesh/src/itkVTKPolyDataMeshIO.cxx | 473 +-----
Modules/IO/Mesh/wrapping/CMakeLists.txt | 8 +
Modules/IO/Mesh/wrapping/itkBYUMeshIO.wrap | 2 +
.../IO/Mesh/wrapping/itkFreeSurferAsciiMeshIO.wrap | 2 +
.../Mesh/wrapping/itkFreeSurferBinaryMeshIO.wrap | 2 +
Modules/IO/Mesh/wrapping/itkMeshFileReader.wrap | 15 +
Modules/IO/Mesh/wrapping/itkMeshFileWriter.wrap | 15 +
Modules/IO/Mesh/wrapping/itkMeshIOBase.wrap | 1 +
Modules/IO/Mesh/wrapping/itkMeshIOFactory.wrap | 1 +
Modules/IO/Mesh/wrapping/itkOBJMeshIO.wrap | 2 +
Modules/IO/Mesh/wrapping/itkOFFMeshIO.wrap | 2 +
Modules/IO/Mesh/wrapping/itkVTKPolyDataMeshIO.wrap | 2 +
Modules/IO/Meta/include/itkMetaArrayReader.h | 2 +-
Modules/IO/Meta/include/itkMetaArrayWriter.h | 2 +-
Modules/IO/Meta/include/itkMetaImageIO.h | 17 +-
Modules/IO/Meta/include/itkMetaImageIOFactory.h | 2 +-
Modules/IO/Meta/itk-module.cmake | 2 +
Modules/IO/Meta/src/itkMetaImageIO.cxx | 79 +-
.../IO/Meta/test/itkMetaImageIOMetaDataTest.cxx | 20 +
Modules/IO/Meta/test/testMetaImage.cxx | 143 ++
Modules/IO/NIFTI/include/itkNiftiImageIO.h | 21 +-
Modules/IO/NIFTI/include/itkNiftiImageIOFactory.h | 2 +-
Modules/IO/NIFTI/itk-module.cmake | 2 +
Modules/IO/NIFTI/src/itkNiftiImageIO.cxx | 127 +-
.../Baseline/SlopeInterceptUCHAR-midSlice.nrrd.md5 | 1 +
.../SlopeInterceptUCHAR-midSlice.nrrd.sha512 | 1 +
Modules/IO/NIFTI/test/CMakeLists.txt | 4 +
.../test/Input/SlopeInterceptUCHAR.nii.gz.md5 | 1 +
.../test/Input/SlopeInterceptUCHAR.nii.gz.sha512 | 1 +
Modules/IO/NIFTI/test/itkExtractSlice.cxx | 72 +
Modules/IO/NIFTI/test/itkNiftiImageIOTest.cxx | 30 +
Modules/IO/NIFTI/test/itkNiftiImageIOTest3.cxx | 79 +-
Modules/IO/NIFTI/test/itkNiftiImageIOTest5.cxx | 2 +
Modules/IO/NRRD/include/itkNrrdImageIO.h | 2 +-
Modules/IO/NRRD/include/itkNrrdImageIOFactory.h | 2 +-
Modules/IO/NRRD/itk-module.cmake | 2 +
Modules/IO/NRRD/src/itkNrrdImageIO.cxx | 21 +-
Modules/IO/NRRD/test/itkNrrdImageIOTest.cxx | 28 +-
Modules/IO/PNG/include/itkPNGImageIO.h | 2 +-
Modules/IO/PNG/include/itkPNGImageIOFactory.h | 2 +-
Modules/IO/PNG/itk-module.cmake | 2 +
Modules/IO/PNG/src/itkPNGImageIO.cxx | 5 +-
Modules/IO/PhilipsREC/include/itkPhilipsPAR.h | 2 +-
.../IO/PhilipsREC/include/itkPhilipsRECImageIO.h | 2 +-
.../include/itkPhilipsRECImageIOFactory.h | 2 +-
Modules/IO/PhilipsREC/itk-module.cmake | 2 +
Modules/IO/RAW/include/itkRawImageIO.h | 2 +-
Modules/IO/RAW/itk-module.cmake | 1 +
.../IO/Siemens/include/itkSiemensVisionImageIO.h | 2 +-
.../include/itkSiemensVisionImageIOFactory.h | 2 +-
.../include/itkPolygonGroupSpatialObjectXMLFile.h | 4 +-
.../include/itkSpatialObjectReader.h | 2 +-
.../include/itkSpatialObjectWriter.h | 2 +-
Modules/IO/Stimulate/include/itkStimulateImageIO.h | 2 +-
.../Stimulate/include/itkStimulateImageIOFactory.h | 2 +-
Modules/IO/Stimulate/itk-module.cmake | 2 +
Modules/IO/TIFF/include/itkTIFFImageIO.h | 2 +-
Modules/IO/TIFF/include/itkTIFFImageIOFactory.h | 2 +-
Modules/IO/TIFF/itk-module.cmake | 2 +
.../include/itkCompositeTransformIOHelper.hxx | 2 +-
.../TransformBase/include/itkTransformFileReader.h | 2 +-
.../TransformBase/include/itkTransformFileWriter.h | 2 +-
.../IO/TransformBase/include/itkTransformIOBase.h | 2 +-
.../TransformBase/include/itkTransformIOFactory.h | 2 +-
.../include/itkTransformFactoryBase.h | 2 +-
.../IO/TransformHDF5/include/itkHDF5TransformIO.h | 2 +-
.../include/itkHDF5TransformIOFactory.h | 2 +-
Modules/IO/TransformHDF5/itk-module.cmake | 2 +
.../include/itkTxtTransformIO.h | 2 +-
.../include/itkTxtTransformIOFactory.h | 2 +-
Modules/IO/TransformInsightLegacy/itk-module.cmake | 2 +
.../include/itkMINCTransformAdapter.h | 4 +-
.../IO/TransformMINC/include/itkMINCTransformIO.h | 2 +-
.../TransformMINC/include/itkMINCTransformIO.hxx | 4 +-
.../include/itkMINCTransformIOFactory.h | 2 +-
Modules/IO/TransformMINC/itk-module.cmake | 2 +
.../TransformMatlab/include/itkMatlabTransformIO.h | 2 +-
.../include/itkMatlabTransformIOFactory.h | 2 +-
Modules/IO/TransformMatlab/itk-module.cmake | 2 +
Modules/IO/VTK/include/itkVTKImageIO.h | 3 +-
Modules/IO/VTK/include/itkVTKImageIOFactory.h | 2 +-
Modules/IO/VTK/itk-module.cmake | 2 +
Modules/IO/VTK/src/itkVTKImageIO.cxx | 70 +-
Modules/IO/VTK/test/itkVTKImageIO2Test.cxx | 505 +-----
Modules/IO/VTK/test/itkVTKImageIOStreamTest.cxx | 4 +-
Modules/IO/VTK/test/itkVTKImageIOTest.cxx | 166 +-
Modules/IO/XML/include/itkXMLFile.h | 2 +-
.../Nonunit/Review/include/itkBruker2DSEQImageIO.h | 208 ---
.../Review/include/itkBruker2DSEQImageIOFactory.h | 75 -
.../itkDiffeomorphicDemonsRegistrationFilter.h | 220 ---
...iscreteGradientMagnitudeGaussianImageFunction.h | 2 +-
.../include/itkESMDemonsRegistrationFunction.h | 289 ----
...tkFastSymmetricForcesDemonsRegistrationFilter.h | 194 ---
.../Nonunit/Review/include/itkJPEG2000ImageIO.h | 2 +-
.../Review/include/itkJPEG2000ImageIOFactory.h | 2 +-
.../include/itkMaskedMovingHistogramImageFilter.h | 181 --
.../Review/include/itkMaskedRankImageFilter.h | 140 --
Modules/Nonunit/Review/include/itkRankHistogram.h | 400 -----
.../Nonunit/Review/include/itkRankImageFilter.h | 141 --
.../itkRobustAutomaticThresholdCalculator.h | 2 +-
.../itkRobustAutomaticThresholdImageFilter.h | 2 +-
Modules/Nonunit/Review/src/CMakeLists.txt | 2 -
.../Nonunit/Review/src/itkBruker2DSEQImageIO.cxx | 1743 --------------------
.../Review/src/itkBruker2DSEQImageIOFactory.cxx | 57 -
Modules/Nonunit/Review/src/itkJPEG2000ImageIO.cxx | 4 +-
Modules/Nonunit/Review/test/CMakeLists.txt | 101 +-
.../Review/test/itkBruker2DSEQImageIOTest.cxx | 60 -
.../Nonunit/Review/test/itkImageFunctionTest.cxx | 2 +-
.../test/itkLabelGeometryImageFilterTest.cxx | 3 +
.../test/itkWarpHarmonicEnergyCalculatorTest.cxx | 86 +-
.../Review/wrapping/itkBruker2DSEQImageIO.wrap | 2 -
.../Eigen/include/itkEigenAnalysis2DImageFilter.h | 2 +-
Modules/Numerics/FEM/CMakeLists.txt | 5 +
.../include/itkFEMElement2DC0LinearQuadrilateral.h | 2 +-
.../include/itkFEMElement2DC0LinearTriangular.h | 2 +-
.../include/itkFEMElement3DC0LinearHexahedron.h | 2 +-
.../include/itkFEMElement3DC0LinearTetrahedron.h | 2 +-
Modules/Numerics/FEM/include/itkFEMElementBase.h | 2 +-
Modules/Numerics/FEM/include/itkFEMException.h | 10 +-
Modules/Numerics/FEM/include/itkFEMFactoryBase.h | 2 +-
.../FEM/include/itkFEMItpackSparseMatrix.h | 4 +-
Modules/Numerics/FEM/include/itkFEMLightObject.h | 4 +-
.../FEM/include/itkFEMLinearSystemWrapper.h | 4 +-
.../include/itkFEMLinearSystemWrapperDenseVNL.h | 2 +-
.../FEM/include/itkFEMLinearSystemWrapperItpack.h | 6 +-
.../FEM/include/itkFEMLinearSystemWrapperVNL.h | 2 +-
Modules/Numerics/FEM/include/itkFEMObject.h | 2 +-
.../FEM/include/itkFEMObjectSpatialObject.h | 2 +-
Modules/Numerics/FEM/include/itkFEMRobustSolver.h | 2 +-
.../itkFEMScatteredDataPointSetToImageFilter.h | 2 +-
Modules/Numerics/FEM/include/itkFEMSolver.h | 2 +-
.../FEM/include/itkFEMSolverCrankNicolson.h | 2 +-
.../Numerics/FEM/include/itkFEMSolverHyperbolic.h | 33 +-
.../FEM/include/itkFEMSolverHyperbolic.hxx | 31 +-
.../FEM/include/itkFEMSpatialObjectReader.h | 2 +-
.../FEM/include/itkFEMSpatialObjectWriter.h | 2 +-
.../include/itkImageToRectilinearFEMObjectFilter.h | 2 +-
.../FEM/include/itkMetaFEMObjectConverter.h | 2 +-
Modules/Numerics/FEM/src/CMakeLists.txt | 2 -
Modules/Numerics/FEM/src/itkFEMException.cxx | 10 +-
.../Numerics/FEM/src/itkFEMItpackSparseMatrix.cxx | 4 +-
.../Numerics/FEM/src/itkFEMLinearSystemWrapper.cxx | 4 +-
.../FEM/test/itkFEMSolverHyperbolicTest.cxx | 31 +-
.../include/itkNarrowBandImageFilterBase.h | 2 +-
.../include/itkBackPropagationLayer.h | 2 +-
.../include/itkBatchSupervisedTrainingFunction.h | 2 +-
.../include/itkCompletelyConnectedWeightSet.h | 2 +-
.../itkErrorBackPropagationLearningWithMomentum.h | 2 +-
.../NeuralNetworks/include/itkErrorFunctionBase.h | 2 +-
.../include/itkGaussianRadialBasisFunction.h | 2 +-
.../include/itkIdentityTransferFunction.h | 2 +-
.../NeuralNetworks/include/itkInputFunctionBase.h | 2 +-
.../itkIterativeSupervisedTrainingFunction.h | 2 +-
.../Numerics/NeuralNetworks/include/itkLayerBase.h | 2 +-
.../include/itkLearningFunctionBase.h | 2 +-
.../include/itkLogSigmoidTransferFunction.h | 2 +-
.../include/itkMultilayerNeuralNetworkBase.h | 2 +-
.../include/itkNeuralNetworkObject.h | 2 +-
...itkOneHiddenLayerBackPropagationNeuralNetwork.h | 2 +-
.../include/itkQuickPropLearningRule.h | 2 +-
.../itkRBFBackPropagationLearningFunction.h | 2 +-
.../Numerics/NeuralNetworks/include/itkRBFLayer.h | 2 +-
.../NeuralNetworks/include/itkRBFNetwork.h | 2 +-
.../include/itkRadialBasisFunctionBase.h | 2 +-
.../include/itkSigmoidTransferFunction.h | 2 +-
.../include/itkSquaredDifferenceErrorFunction.h | 2 +-
.../NeuralNetworks/include/itkSumInputFunction.h | 2 +-
.../include/itkSymmetricSigmoidTransferFunction.h | 2 +-
.../include/itkTanSigmoidTransferFunction.h | 2 +-
.../include/itkTrainingFunctionBase.h | 2 +-
.../include/itkTransferFunctionBase.h | 2 +-
...itkTwoHiddenLayerBackPropagationNeuralNetwork.h | 2 +-
.../NeuralNetworks/include/itkWeightSetBase.h | 2 +-
.../Optimizers/include/itkAmoebaOptimizer.h | 2 +-
.../include/itkConjugateGradientOptimizer.h | 2 +-
.../Numerics/Optimizers/include/itkCostFunction.h | 2 +-
.../include/itkCumulativeGaussianCostFunction.h | 2 +-
.../include/itkCumulativeGaussianOptimizer.h | 2 +-
.../Optimizers/include/itkExhaustiveOptimizer.h | 2 +-
.../Numerics/Optimizers/include/itkFRPROptimizer.h | 2 +-
.../include/itkGradientDescentOptimizer.h | 2 +-
...itkInitializationBiasedParticleSwarmOptimizer.h | 2 +-
.../Optimizers/include/itkLBFGSBOptimizer.h | 2 +-
.../Optimizers/include/itkLBFGSOptimizer.h | 8 +-
.../include/itkLevenbergMarquardtOptimizer.h | 2 +-
.../include/itkMultipleValuedCostFunction.h | 2 +-
.../include/itkMultipleValuedNonLinearOptimizer.h | 2 +-
.../itkMultipleValuedNonLinearVnlOptimizer.h | 2 +-
.../Optimizers/include/itkNonLinearOptimizer.h | 2 +-
.../include/itkOnePlusOneEvolutionaryOptimizer.h | 2 +-
Modules/Numerics/Optimizers/include/itkOptimizer.h | 2 +-
.../Optimizers/include/itkParticleSwarmOptimizer.h | 2 +-
.../include/itkParticleSwarmOptimizerBase.h | 2 +-
.../Optimizers/include/itkPowellOptimizer.h | 2 +-
...ternionRigidTransformGradientDescentOptimizer.h | 2 +-
.../itkRegularStepGradientDescentBaseOptimizer.h | 2 +-
.../itkRegularStepGradientDescentOptimizer.h | 2 +-
.../Numerics/Optimizers/include/itkSPSAOptimizer.h | 2 +-
.../include/itkSingleValuedCostFunction.h | 2 +-
.../include/itkSingleValuedNonLinearOptimizer.h | 2 +-
.../include/itkSingleValuedNonLinearVnlOptimizer.h | 2 +-
.../include/itkVersorRigid3DTransformOptimizer.h | 2 +-
.../include/itkVersorTransformOptimizer.h | 2 +-
.../Optimizersv4/include/itkAmoebaOptimizerv4.h | 2 +-
.../include/itkCommandIterationUpdatev4.h | 155 ++
.../itkConjugateGradientLineSearchOptimizerv4.h | 2 +-
.../include/itkConvergenceMonitoringFunction.h | 2 +-
.../include/itkExhaustiveOptimizerv4.h | 2 +-
.../itkGradientDescentLineSearchOptimizerv4.h | 2 +-
.../include/itkGradientDescentOptimizerBasev4.h | 2 +-
...zerBasev4ModifyGradientByLearningRateThreader.h | 2 +-
...OptimizerBasev4ModifyGradientByScalesThreader.h | 2 +-
.../include/itkGradientDescentOptimizerv4.h | 4 +-
.../Optimizersv4/include/itkLBFGS2Optimizerv4.h | 448 +++++
.../Optimizersv4/include/itkLBFGSBOptimizerv4.h | 2 +-
.../Optimizersv4/include/itkLBFGSOptimizerBasev4.h | 2 +-
.../Optimizersv4/include/itkLBFGSOptimizerv4.h | 4 +-
.../include/itkMultiGradientOptimizerv4.h | 2 +-
.../include/itkMultiStartOptimizerv4.h | 2 +-
.../Optimizersv4/include/itkObjectToObjectMetric.h | 4 +-
.../include/itkObjectToObjectMetric.hxx | 2 +-
.../include/itkObjectToObjectMetricBase.h | 4 +-
.../include/itkObjectToObjectOptimizerBase.h | 2 +-
.../include/itkOnePlusOneEvolutionaryOptimizerv4.h | 2 +-
.../itkOnePlusOneEvolutionaryOptimizerv4.hxx | 2 +-
.../include/itkOptimizerParameterScalesEstimator.h | 2 +-
.../Optimizersv4/include/itkPowellOptimizerv4.h | 2 +-
.../include/itkQuasiNewtonOptimizerv4.h | 2 +-
...siNewtonOptimizerv4EstimateNewtonStepThreader.h | 2 +-
.../itkRegistrationParameterScalesEstimator.h | 2 +-
.../itkRegistrationParameterScalesFromIndexShift.h | 2 +-
.../itkRegistrationParameterScalesFromJacobian.h | 2 +-
...kRegistrationParameterScalesFromPhysicalShift.h | 2 +-
.../itkRegistrationParameterScalesFromShiftBase.h | 2 +-
.../itkRegularStepGradientDescentOptimizerv4.h | 2 +-
.../include/itkSingleValuedCostFunctionv4.h | 2 +-
.../itkSingleValuedNonLinearVnlOptimizerv4.h | 2 +-
.../itkWindowConvergenceMonitoringFunction.h | 2 +-
Modules/Numerics/Optimizersv4/itk-module.cmake | 2 +
Modules/Numerics/Optimizersv4/src/CMakeLists.txt | 1 +
.../Optimizersv4/src/itkLBFGS2Optimizerv4.cxx | 550 ++++++
Modules/Numerics/Optimizersv4/test/CMakeLists.txt | 5 +
.../test/itkGradientDescentOptimizerBasev4Test.cxx | 4 +-
.../Optimizersv4/test/itkLBFGS2Optimizerv4Test.cxx | 292 ++++
.../test/itkObjectToObjectMetricBaseTest.cxx | 2 +-
.../test/itkObjectToObjectOptimizerBaseTest.cxx | 2 +-
.../itkOptimizerParameterScalesEstimatorTest.cxx | 2 +-
...itkRegistrationParameterScalesEstimatorTest.cxx | 4 +-
...gistrationParameterScalesFromIndexShiftTest.cxx | 2 +-
...RegistrationParameterScalesFromJacobianTest.cxx | 2 +-
...arameterScalesFromPhysicalShiftPointSetTest.cxx | 2 +-
...trationParameterScalesFromPhysicalShiftTest.cxx | 2 +-
.../include/itkMultivariateLegendrePolynomial.h | 8 +-
.../src/itkMultivariateLegendrePolynomial.cxx | 2 -
.../Statistics/include/itkChiSquareDistribution.h | 2 +-
.../Statistics/include/itkCovarianceSampleFilter.h | 2 +-
.../Numerics/Statistics/include/itkDecisionRule.h | 2 +-
.../include/itkDenseFrequencyContainer2.h | 2 +-
.../Statistics/include/itkDistanceMetric.h | 2 +-
.../itkDistanceToCentroidMembershipFunction.h | 2 +-
.../include/itkEuclideanDistanceMetric.h | 2 +-
.../include/itkEuclideanDistanceMetric.hxx | 4 +-
.../include/itkEuclideanSquareDistanceMetric.h | 2 +-
...kExpectationMaximizationMixtureModelEstimator.h | 2 +-
.../Statistics/include/itkGaussianDistribution.h | 2 +-
.../include/itkGaussianMembershipFunction.h | 2 +-
.../include/itkGaussianMixtureModelComponent.h | 2 +-
.../itkGaussianRandomSpatialNeighborSubsampler.h | 2 +-
Modules/Numerics/Statistics/include/itkHistogram.h | 2 +-
.../include/itkHistogramToEntropyImageFilter.h | 2 +-
.../Statistics/include/itkHistogramToImageFilter.h | 2 +-
.../include/itkHistogramToIntensityImageFilter.h | 2 +-
.../itkHistogramToLogProbabilityImageFilter.h | 2 +-
.../include/itkHistogramToProbabilityImageFilter.h | 2 +-
.../itkHistogramToRunLengthFeaturesFilter.h | 2 +-
.../include/itkHistogramToTextureFeaturesFilter.h | 2 +-
.../Statistics/include/itkImageClassifierFilter.h | 2 +-
.../Statistics/include/itkImageToHistogramFilter.h | 2 +-
.../include/itkImageToListSampleAdaptor.h | 2 +-
.../include/itkImageToListSampleFilter.h | 2 +-
.../include/itkImageToNeighborhoodSampleAdaptor.h | 2 +-
.../itkJointDomainImageToListSampleAdaptor.h | 2 +-
Modules/Numerics/Statistics/include/itkKdTree.h | 2 +-
.../include/itkKdTreeBasedKmeansEstimator.h | 2 +-
.../Statistics/include/itkKdTreeGenerator.h | 2 +-
.../Numerics/Statistics/include/itkListSample.h | 2 +-
.../itkMahalanobisDistanceMembershipFunction.h | 2 +-
.../include/itkMahalanobisDistanceMetric.h | 2 +-
.../include/itkManhattanDistanceMetric.h | 2 +-
.../include/itkMaskedImageToHistogramFilter.h | 2 +-
.../Statistics/include/itkMaximumDecisionRule.h | 2 +-
.../include/itkMaximumRatioDecisionRule.h | 2 +-
.../Statistics/include/itkMeanSampleFilter.h | 2 +-
.../Statistics/include/itkMembershipFunctionBase.h | 2 +-
.../Statistics/include/itkMembershipSample.h | 2 +-
.../Statistics/include/itkMinimumDecisionRule.h | 2 +-
.../include/itkMixtureModelComponentBase.h | 2 +-
.../Statistics/include/itkNeighborhoodSampler.h | 2 +-
.../Statistics/include/itkNormalVariateGenerator.h | 2 +-
.../include/itkPointSetToListSampleAdaptor.h | 2 +-
.../include/itkProbabilityDistribution.h | 2 +-
.../include/itkRegionConstrainedSubsampler.h | 2 +-
Modules/Numerics/Statistics/include/itkSample.h | 2 +-
.../Statistics/include/itkSampleClassifierFilter.h | 2 +-
.../include/itkSampleToHistogramFilter.h | 2 +-
.../include/itkSampleToSubsampleFilter.h | 2 +-
.../itkScalarImageToCooccurrenceListSampleFilter.h | 2 +-
.../itkScalarImageToCooccurrenceMatrixFilter.h | 2 +-
.../include/itkScalarImageToHistogramGenerator.h | 2 +-
.../itkScalarImageToRunLengthFeaturesFilter.h | 2 +-
.../itkScalarImageToRunLengthMatrixFilter.h | 2 +-
.../itkScalarImageToTextureFeaturesFilter.h | 2 +-
.../include/itkSparseFrequencyContainer2.h | 2 +-
.../include/itkSpatialNeighborSubsampler.h | 2 +-
.../itkStandardDeviationPerComponentSampleFilter.h | 2 +-
Modules/Numerics/Statistics/include/itkSubsample.h | 2 +-
.../Statistics/include/itkSubsamplerBase.h | 2 +-
.../Numerics/Statistics/include/itkTDistribution.h | 2 +-
.../itkUniformRandomSpatialNeighborSubsampler.h | 2 +-
.../itkVectorContainerToListSampleAdaptor.h | 2 +-
.../include/itkWeightedCentroidKdTreeGenerator.h | 2 +-
.../include/itkWeightedCovarianceSampleFilter.h | 2 +-
.../include/itkWeightedMeanSampleFilter.h | 2 +-
.../test/itkCovarianceSampleFilterTest3.cxx | 2 +-
.../test/itkEuclideanDistanceMetricTest.cxx | 2 +-
.../test/itkEuclideanSquareDistanceMetricTest.cxx | 2 +-
.../test/itkManhattanDistanceMetricTest.cxx | 2 +-
.../test/itkSampleToSubsampleFilterTest1.cxx | 2 +-
.../Statistics/test/itkStatisticsAlgorithmTest.cxx | 1 +
.../test/itkWeightedCovarianceSampleFilterTest.cxx | 2 +-
.../itkWeightedCovarianceSampleFilterTest2.cxx | 2 +-
.../test/itkWeightedMeanSampleFilterTest.cxx | 2 +-
...entialDiffeomorphicTransformParametersAdaptor.h | 2 +-
...teDisplacementFieldTransformParametersAdaptor.h | 2 +-
.../include/itkBSplineTransformParametersAdaptor.h | 2 +-
.../Common/include/itkBlockMatchingImageFilter.h | 4 +-
.../Common/include/itkBlockMatchingImageFilter.hxx | 2 +-
.../include/itkCenteredTransformInitializer.h | 2 +-
.../itkCenteredVersorTransformInitializer.h | 2 +-
.../itkCompareHistogramImageToImageMetric.h | 9 +-
.../itkCompareHistogramImageToImageMetric.hxx | 2 -
...nstantVelocityFieldTransformParametersAdaptor.h | 2 +-
...elationCoefficientHistogramImageToImageMetric.h | 2 +-
...tkDisplacementFieldTransformParametersAdaptor.h | 2 +-
.../include/itkEuclideanDistancePointMetric.h | 8 +-
.../include/itkEuclideanDistancePointMetric.hxx | 4 +-
...entialDiffeomorphicTransformParametersAdaptor.h | 2 +-
...teDisplacementFieldTransformParametersAdaptor.h | 2 +-
.../itkGradientDifferenceImageToImageMetric.h | 4 +-
.../itkGradientDifferenceImageToImageMetric.hxx | 2 +-
.../include/itkHistogramImageToImageMetric.h | 4 +-
.../include/itkHistogramImageToImageMetric.hxx | 1 -
.../Common/include/itkImageRegistrationMethod.h | 5 +-
.../Common/include/itkImageRegistrationMethod.hxx | 1 -
.../Common/include/itkImageToImageMetric.h | 7 +-
.../Common/include/itkImageToImageMetric.hxx | 2 -
.../Common/include/itkImageToSpatialObjectMetric.h | 5 +-
.../include/itkImageToSpatialObjectMetric.hxx | 1 -
.../itkImageToSpatialObjectRegistrationMethod.h | 5 +-
.../itkImageToSpatialObjectRegistrationMethod.hxx | 1 -
.../include/itkKappaStatisticImageToImageMetric.h | 2 +-
...backLeiblerCompareHistogramImageToImageMetric.h | 7 +-
...ckLeiblerCompareHistogramImageToImageMetric.hxx | 2 +-
.../include/itkLandmarkBasedTransformInitializer.h | 2 +-
.../itkMatchCardinalityImageToImageMetric.h | 2 +-
.../itkMattesMutualInformationImageToImageMetric.h | 4 +-
...tkMattesMutualInformationImageToImageMetric.hxx | 2 +-
...nReciprocalSquareDifferenceImageToImageMetric.h | 2 +-
...ciprocalSquareDifferencePointSetToImageMetric.h | 2 +-
.../include/itkMeanSquareRegistrationFunction.h | 2 +-
.../itkMeanSquaresHistogramImageToImageMetric.h | 2 +-
.../include/itkMeanSquaresImageToImageMetric.h | 4 +-
.../include/itkMeanSquaresImageToImageMetric.hxx | 1 -
.../include/itkMeanSquaresPointSetToImageMetric.h | 2 +-
.../itkMultiResolutionImageRegistrationMethod.h | 5 +-
.../itkMultiResolutionImageRegistrationMethod.hxx | 1 -
.../include/itkMultiResolutionPyramidImageFilter.h | 2 +-
...kMutualInformationHistogramImageToImageMetric.h | 2 +-
.../itkMutualInformationImageToImageMetric.h | 2 +-
.../itkNormalizedCorrelationImageToImageMetric.h | 2 +-
...itkNormalizedCorrelationPointSetToImageMetric.h | 2 +-
...dMutualInformationHistogramImageToImageMetric.h | 2 +-
.../include/itkPDEDeformableRegistrationFunction.h | 2 +-
.../Common/include/itkPointSetToImageMetric.h | 5 +-
.../Common/include/itkPointSetToImageMetric.hxx | 1 -
.../include/itkPointSetToImageRegistrationMethod.h | 5 +-
.../itkPointSetToImageRegistrationMethod.hxx | 1 -
.../Common/include/itkPointSetToPointSetMetric.h | 5 +-
.../Common/include/itkPointSetToPointSetMetric.hxx | 1 -
.../itkPointSetToPointSetRegistrationMethod.h | 5 +-
.../itkPointSetToPointSetRegistrationMethod.hxx | 1 -
.../itkPointSetToSpatialObjectDemonsRegistration.h | 2 +-
.../Registration/Common/include/itkPointsLocator.h | 2 +-
...itkRecursiveMultiResolutionPyramidImageFilter.h | 2 +-
...kRecursiveMultiResolutionPyramidImageFilter.hxx | 2 +-
...SplineVelocityFieldTransformParametersAdaptor.h | 2 +-
...aryingVelocityFieldTransformParametersAdaptor.h | 2 +-
.../Common/include/itkTransformParametersAdaptor.h | 2 +-
.../include/itkTransformParametersAdaptorBase.h | 2 +-
.../FEM/include/itkFEMRegistrationFilter.h | 2 +-
.../FEM/include/itkMIRegistrationFunction.h | 2 +-
.../FEM/include/itkNCCRegistrationFunction.h | 2 +-
.../itkPhysicsBasedNonRigidRegistrationMethod.h | 2 +-
...kPhysicsBasedNonRigidRegistrationMethodTest.cxx | 3 +
.../FEM/test/itkVTKTetrahedralMeshReader.h | 2 +-
.../itkGPUPDEDeformableRegistrationFunction.h | 4 +-
.../include/itkGPUDemonsRegistrationFilter.h | 4 +-
.../include/itkGPUDemonsRegistrationFunction.h | 4 +-
.../include/itkGPUDemonsRegistrationFunction.hxx | 2 +-
.../itkGPUPDEDeformableRegistrationFilter.h | 24 +-
.../itkGPUPDEDeformableRegistrationFilter.hxx | 51 -
.../test/itkGPUDemonsRegistrationFilterTest.cxx | 6 +-
...TSNeighborhoodCorrelationImageToImageMetricv4.h | 4 +-
...NeighborhoodCorrelationImageToImageMetricv4.hxx | 2 +-
.../include/itkCorrelationImageToImageMetricv4.h | 2 +-
...eToImageMetricv4GetValueAndDerivativeThreader.h | 2 +-
...CorrelationImageToImageMetricv4HelperThreader.h | 2 +-
.../include/itkDemonsImageToImageMetricv4.h | 4 +-
.../include/itkDemonsImageToImageMetricv4.hxx | 2 +-
...oImageMetricv4GetValueAndDerivativeThreader.hxx | 2 +-
...tkEuclideanDistancePointSetToPointSetMetricv4.h | 2 +-
...itkExpectationBasedPointSetToPointSetMetricv4.h | 4 +-
...kExpectationBasedPointSetToPointSetMetricv4.hxx | 2 +-
.../Metricsv4/include/itkImageToImageMetricv4.h | 4 +-
.../Metricsv4/include/itkImageToImageMetricv4.hxx | 2 +-
...mageMetricv4GetValueAndDerivativeThreaderBase.h | 2 +-
...avrdaCharvatTsallisPointSetToPointSetMetricv4.h | 4 +-
...rdaCharvatTsallisPointSetToPointSetMetricv4.hxx | 2 +-
...mMutualInformationComputeJointPDFThreaderBase.h | 2 +-
...utualInformationGetValueAndDerivativeThreader.h | 2 +-
...istogramMutualInformationImageToImageMetricv4.h | 4 +-
...togramMutualInformationImageToImageMetricv4.hxx | 2 +-
.../include/itkLabeledPointSetToPointSetMetricv4.h | 4 +-
.../itkLabeledPointSetToPointSetMetricv4.hxx | 2 +-
.../itkManifoldParzenWindowsPointSetFunction.h | 2 +-
...tkMattesMutualInformationImageToImageMetricv4.h | 4 +-
...MattesMutualInformationImageToImageMetricv4.hxx | 2 +-
.../include/itkMeanSquaresImageToImageMetricv4.h | 2 +-
.../include/itkObjectToObjectMultiMetricv4.h | 4 +-
.../include/itkObjectToObjectMultiMetricv4.hxx | 2 +-
.../Metricsv4/include/itkPointSetFunction.h | 2 +-
.../include/itkPointSetToPointSetMetricv4.h | 4 +-
.../include/itkPointSetToPointSetMetricv4.hxx | 2 +-
...oImageMetricv4VectorRegistrationTest.nii.gz.md5 | 2 +-
...ageMetricv4VectorRegistrationTest.nii.gz.sha512 | 2 +-
Modules/Registration/Metricsv4/test/CMakeLists.txt | 7 +
.../Metricsv4/test/itkImageToImageMetricv4Test.cxx | 2 +-
.../Metricsv4/test/itkMetricImageGradientTest.cxx | 4 +-
.../itkCorrelationImageToImageMetricv4.wrap | 3 +
.../wrapping/itkDemonsImageToImageMetricv4.wrap | 3 +
...ogramMutualInformationImageToImageMetricv4.wrap | 3 +
.../include/itkDemonsRegistrationFunction.h | 2 +-
.../include/itkDemonsRegistrationFunction.hxx | 2 +-
.../itkDiffeomorphicDemonsRegistrationFilter.h | 220 +++
.../itkDiffeomorphicDemonsRegistrationFilter.hxx | 0
.../include/itkESMDemonsRegistrationFunction.h | 289 ++++
.../include/itkESMDemonsRegistrationFunction.hxx | 0
...tkFastSymmetricForcesDemonsRegistrationFilter.h | 194 +++
...FastSymmetricForcesDemonsRegistrationFilter.hxx | 0
...stSymmetricForcesDemonsRegistrationFunction.hxx | 2 +-
.../include/itkLevelSetMotionRegistrationFilter.h | 2 +-
.../itkLevelSetMotionRegistrationFunction.h | 2 +-
.../include/itkPDEDeformableRegistrationFilter.h | 22 +-
.../include/itkPDEDeformableRegistrationFilter.hxx | 63 +-
.../itkSymmetricForcesDemonsRegistrationFilter.h | 2 +-
.../itkSymmetricForcesDemonsRegistrationFunction.h | 2 +-
...tkSymmetricForcesDemonsRegistrationFunction.hxx | 2 +-
.../Registration/PDEDeformable/test/CMakeLists.txt | 45 +
...tkDiffeomorphicDemonsRegistrationFilterTest.cxx | 0
...kDiffeomorphicDemonsRegistrationFilterTest2.cxx | 0
...SymmetricForcesDemonsRegistrationFilterTest.cxx | 0
.../include/itkBSplineSyNImageRegistrationMethod.h | 2 +-
.../include/itkImageRegistrationMethodv4.h | 2 +-
.../include/itkSyNImageRegistrationMethod.h | 2 +-
...ngBSplineVelocityFieldImageRegistrationMethod.h | 2 +-
...VaryingVelocityFieldImageRegistrationMethodv4.h | 2 +-
.../RegistrationMethodsv4/test/CMakeLists.txt | 2 +
Modules/Remote/BridgeNumPy.remote.cmake | 2 +-
Modules/Remote/IOFDF.remote.cmake | 2 +-
Modules/Remote/IOSTL.remote.cmake | 2 +-
Modules/Remote/IsotropicWavelets.remote.cmake | 11 +
Modules/Remote/MGHIO.remote.cmake | 2 +-
.../MorphologicalContourInterpolation.remote.cmake | 2 +-
Modules/Remote/RLEImage.remote.cmake | 2 +-
Modules/Remote/SCIFIO.remote.cmake | 2 +-
Modules/Remote/SimpleITKFilters.remote.cmake | 9 +
Modules/Remote/TBBImageToImageFilter.remote.cmake | 8 +
Modules/Remote/TextureFeatures.remote.cmake | 18 +
.../Remote/VariationalRegistration.remote.cmake | 2 +-
Modules/Segmentation/BioCell/include/itkBioCell.h | 2 +-
.../BioCell/include/itkBioCellularAggregate.h | 2 +-
.../BioCell/include/itkBioCellularAggregateBase.h | 2 +-
.../include/itkBayesianClassifierImageFilter.h | 2 +-
...tkBayesianClassifierInitializationImageFilter.h | 2 +-
.../Classifiers/include/itkClassifierBase.h | 2 +-
.../Classifiers/include/itkImageClassifierBase.h | 2 +-
.../include/itkImageGaussianModelEstimator.h | 2 +-
.../include/itkImageKmeansModelEstimator.h | 2 +-
.../include/itkImageModelEstimatorBase.h | 2 +-
.../include/itkScalarImageKmeansImageFilter.h | 2 +-
.../itkConnectedComponentFunctorImageFilter.h | 2 +-
.../include/itkConnectedComponentImageFilter.h | 19 +-
.../include/itkHardConnectedComponentImageFilter.h | 2 +-
.../include/itkRelabelComponentImageFilter.h | 2 +-
.../itkScalarConnectedComponentImageFilter.h | 2 +-
...hresholdMaximumConnectedComponentsImageFilter.h | 2 +-
...esholdMaximumConnectedComponentsImageFilter.hxx | 4 +-
.../itkVectorConnectedComponentImageFilter.h | 2 +-
.../itkDeformableSimplexMesh3DBalloonForceFilter.h | 2 +-
.../include/itkDeformableSimplexMesh3DFilter.h | 2 +-
.../include/itkDeformableSimplexMesh3DFilter.hxx | 11 +
...bleSimplexMesh3DGradientConstraintForceFilter.h | 2 +-
.../include/itkKLMRegionGrowImageFilter.h | 2 +-
.../include/itkKLMSegmentationBorder.h | 2 +-
.../include/itkKLMSegmentationRegion.h | 2 +-
.../include/itkRegionGrowImageFilter.h | 2 +-
.../include/itkSegmentationBorder.h | 2 +-
.../include/itkSegmentationRegion.h | 2 +-
.../include/itkBinaryMedianImageFilter.h | 2 +-
.../include/itkLabelVotingImageFilter.h | 2 +-
.../include/itkMultiLabelSTAPLEImageFilter.h | 2 +-
.../itkVotingBinaryHoleFillingImageFilter.h | 2 +-
.../include/itkVotingBinaryImageFilter.h | 2 +-
...tkVotingBinaryIterativeHoleFillingImageFilter.h | 2 +-
.../test/itkVotingBinaryImageFilterTest.cxx | 4 +-
.../itkAnisotropicFourthOrderLevelSetImageFilter.h | 2 +-
.../itkBinaryMaskToNarrowBandPointSetFilter.h | 2 +-
.../include/itkCannySegmentationLevelSetFunction.h | 2 +-
.../itkCannySegmentationLevelSetImageFilter.h | 2 +-
.../include/itkCollidingFrontsImageFilter.h | 2 +-
.../LevelSets/include/itkCurvesLevelSetFunction.h | 2 +-
.../include/itkCurvesLevelSetImageFilter.h | 2 +-
.../include/itkExtensionVelocitiesImageFilter.h | 2 +-
.../itkGeodesicActiveContourLevelSetFunction.h | 2 +-
.../itkGeodesicActiveContourLevelSetImageFilter.h | 2 +-
...odesicActiveContourShapePriorLevelSetFunction.h | 2 +-
...sicActiveContourShapePriorLevelSetImageFilter.h | 2 +-
.../itkImplicitManifoldNormalVectorFilter.h | 2 +-
.../itkIsotropicFourthOrderLevelSetImageFilter.h | 2 +-
.../itkLaplacianSegmentationLevelSetFunction.h | 2 +-
.../itkLaplacianSegmentationLevelSetImageFilter.h | 2 +-
.../LevelSets/include/itkLevelSetFunction.h | 2 +-
.../include/itkLevelSetNeighborhoodExtractor.h | 2 +-
.../itkLevelSetVelocityNeighborhoodExtractor.h | 2 +-
.../itkNarrowBandCurvesLevelSetImageFilter.h | 2 +-
.../include/itkNarrowBandLevelSetImageFilter.h | 2 +-
...wBandThresholdSegmentationLevelSetImageFilter.h | 2 +-
.../include/itkNormalVectorDiffusionFunction.h | 2 +-
.../include/itkNormalVectorFunctionBase.h | 2 +-
.../itkParallelSparseFieldLevelSetImageFilter.h | 2 +-
.../include/itkReinitializeLevelSetImageFilter.h | 2 +-
.../include/itkSegmentationLevelSetFunction.h | 2 +-
.../include/itkSegmentationLevelSetImageFilter.h | 25 +-
.../include/itkSegmentationLevelSetImageFilter.hxx | 6 +
.../include/itkShapeDetectionLevelSetFunction.h | 2 +-
.../include/itkShapeDetectionLevelSetImageFilter.h | 2 +-
.../include/itkShapePriorMAPCostFunction.h | 4 +-
.../include/itkShapePriorMAPCostFunction.hxx | 2 +-
.../include/itkShapePriorMAPCostFunctionBase.h | 5 +-
.../include/itkShapePriorMAPCostFunctionBase.hxx | 1 -
.../itkShapePriorSegmentationLevelSetFunction.h | 2 +-
.../itkShapePriorSegmentationLevelSetImageFilter.h | 2 +-
.../itkSparseFieldFourthOrderLevelSetImageFilter.h | 2 +-
.../include/itkSparseFieldLevelSetImageFilter.h | 2 +-
.../itkThresholdSegmentationLevelSetFunction.h | 2 +-
.../itkThresholdSegmentationLevelSetImageFilter.h | 2 +-
.../include/itkUnsharpMaskLevelSetImageFilter.h | 2 +-
...tkVectorThresholdSegmentationLevelSetFunction.h | 2 +-
...ectorThresholdSegmentationLevelSetImageFilter.h | 2 +-
...itkCannySegmentationLevelSetImageFilterTest.cxx | 2 +-
...aplacianSegmentationLevelSetImageFilterTest.cxx | 2 +-
.../LevelSets/test/itkLevelSetFunctionTest.cxx | 4 +-
...hresholdSegmentationLevelSetImageFilterTest.cxx | 2 +-
...kParallelSparseFieldLevelSetImageFilterTest.cxx | 4 +-
...hresholdSegmentationLevelSetImageFilterTest.cxx | 4 +-
.../include/itkBinaryImageToLevelSetImageAdaptor.h | 10 +-
.../itkBinaryImageToLevelSetImageAdaptorBase.h | 2 +-
.../LevelSetsv4/include/itkDiscreteLevelSetImage.h | 2 +-
.../LevelSetsv4/include/itkLevelSetBase.h | 2 +-
.../LevelSetsv4/include/itkLevelSetContainer.h | 4 +-
.../LevelSetsv4/include/itkLevelSetContainerBase.h | 2 +-
.../LevelSetsv4/include/itkLevelSetDenseImage.h | 2 +-
.../include/itkLevelSetDomainMapImageFilter.h | 2 +-
.../include/itkLevelSetDomainPartitionBase.h | 2 +-
.../include/itkLevelSetDomainPartitionImage.h | 2 +-
.../itkLevelSetDomainPartitionImageWithKdTree.h | 2 +-
.../include/itkLevelSetEquationAdvectionTerm.h | 2 +-
.../include/itkLevelSetEquationBinaryMaskTerm.h | 2 +-
.../itkLevelSetEquationChanAndVeseExternalTerm.h | 2 +-
.../itkLevelSetEquationChanAndVeseInternalTerm.h | 2 +-
.../include/itkLevelSetEquationContainer.h | 2 +-
.../include/itkLevelSetEquationCurvatureTerm.h | 2 +-
.../include/itkLevelSetEquationLaplacianTerm.h | 2 +-
.../itkLevelSetEquationOverlapPenaltyTerm.h | 2 +-
.../include/itkLevelSetEquationPropagationTerm.h | 2 +-
.../include/itkLevelSetEquationTermBase.h | 2 +-
.../include/itkLevelSetEquationTermContainer.h | 2 +-
.../LevelSetsv4/include/itkLevelSetEvolution.h | 8 +-
.../LevelSetsv4/include/itkLevelSetEvolutionBase.h | 2 +-
...tEvolutionNumberOfIterationsStoppingCriterion.h | 2 +-
.../itkLevelSetEvolutionStoppingCriterion.h | 2 +-
.../LevelSetsv4/include/itkLevelSetImage.h | 2 +-
.../LevelSetsv4/include/itkLevelSetSparseImage.h | 2 +-
.../include/itkMalcolmSparseLevelSetImage.h | 2 +-
.../include/itkShiSparseLevelSetImage.h | 2 +-
.../include/itkUpdateMalcolmSparseLevelSet.h | 2 +-
.../include/itkUpdateShiSparseLevelSet.h | 2 +-
.../include/itkUpdateWhitakerSparseLevelSet.h | 2 +-
.../include/itkWhitakerSparseLevelSetImage.h | 2 +-
.../include/itkMRFImageFilter.h | 2 +-
.../include/itkRGBGibbsPriorFilter.h | 2 +-
.../include/itkConfidenceConnectedImageFilter.h | 2 +-
.../include/itkConnectedThresholdImageFilter.h | 5 +-
.../include/itkConnectedThresholdImageFilter.hxx | 28 +-
.../include/itkIsolatedConnectedImageFilter.h | 2 +-
.../include/itkNeighborhoodConnectedImageFilter.h | 2 +-
.../test/itkConnectedThresholdImageFilterTest.cxx | 4 +-
.../include/itkPCAShapeSignedDistanceFunction.h | 5 +-
.../include/itkPCAShapeSignedDistanceFunction.hxx | 1 -
.../include/itkShapeSignedDistanceFunction.h | 5 +-
.../include/itkSphereSignedDistanceFunction.h | 2 +-
.../Voronoi/include/itkVoronoiDiagram2D.h | 2 +-
.../Voronoi/include/itkVoronoiDiagram2DGenerator.h | 2 +-
.../include/itkVoronoiPartitioningImageFilter.h | 2 +-
.../include/itkVoronoiSegmentationImageFilter.h | 2 +-
.../itkVoronoiSegmentationImageFilterBase.h | 2 +-
.../include/itkVoronoiSegmentationRGBImageFilter.h | 2 +-
.../include/itkIsolatedWatershedImageFilter.h | 2 +-
...kMorphologicalWatershedFromMarkersImageFilter.h | 2 +-
.../include/itkMorphologicalWatershedImageFilter.h | 2 +-
.../Watersheds/include/itkOneWayEquivalencyTable.h | 2 +-
.../Watersheds/include/itkTobogganImageFilter.h | 2 +-
.../Watersheds/include/itkWatershedBoundary.h | 2 +-
.../include/itkWatershedBoundaryResolver.h | 2 +-
.../include/itkWatershedEquivalenceRelabeler.h | 2 +-
.../Watersheds/include/itkWatershedImageFilter.h | 2 +-
.../itkWatershedMiniPipelineProgressCommand.h | 2 +-
.../Watersheds/include/itkWatershedRelabeler.h | 2 +-
.../Watersheds/include/itkWatershedSegmentTable.h | 2 +-
.../Watersheds/include/itkWatershedSegmentTree.h | 2 +-
.../include/itkWatershedSegmentTreeGenerator.h | 2 +-
.../Watersheds/include/itkWatershedSegmenter.h | 2 +-
.../itkIsolatedWatershedImageFilterTest.png.sha512 | 1 +
...ershedImageFilterTestCloseThresholds.png.sha512 | 1 +
.../Baseline/itkTobogganImageFilterTest.png.sha512 | 1 +
Modules/ThirdParty/DCMTK/CMakeLists.txt | 232 ++-
Modules/ThirdParty/DCMTK/DCMTKGitTag.cmake | 4 +-
Modules/ThirdParty/DCMTK/README | 1 -
Modules/ThirdParty/DCMTK/README.md | 4 +
.../ThirdParty/DCMTK/WindowsBuild/CMakeLists.txt | 35 -
Modules/ThirdParty/DCMTK/itk-module-init.cmake | 66 +-
Modules/ThirdParty/GDCM/CMakeLists.txt | 3 +
Modules/ThirdParty/GDCM/UpdateFromUpstream.sh | 32 +-
Modules/ThirdParty/GoogleTest/CMakeLists.txt | 17 +
.../ThirdParty/GoogleTest/UpdateFromUpstream.sh | 24 +
.../ThirdParty/GoogleTest/itk-module-init.cmake | 38 +
Modules/ThirdParty/GoogleTest/itk-module.cmake | 8 +
Modules/ThirdParty/HDF5/src/CMakeLists.txt | 4 +
Modules/ThirdParty/HDF5/src/README-ITK.txt | 68 -
Modules/ThirdParty/HDF5/src/README.md | 89 +
Modules/ThirdParty/KWIML/CMakeLists.txt | 4 +
.../ThirdParty/KWIML/src/itkkwiml/CMakeLists.txt | 4 +
Modules/ThirdParty/KWSys/README.kwsys | 24 -
Modules/ThirdParty/KWSys/README.md | 29 +
Modules/ThirdParty/KWSys/src/KWSys/Base64.c | 10 -
Modules/ThirdParty/KWSys/src/KWSys/CMakeLists.txt | 175 +-
.../ThirdParty/KWSys/src/KWSys/CONTRIBUTING.rst | 10 +-
.../KWSys/src/KWSys/CommandLineArguments.cxx | 113 +-
Modules/ThirdParty/KWSys/src/KWSys/Configure.h.in | 3 -
.../ThirdParty/KWSys/src/KWSys/ConsoleBuf.hxx.in | 9 +-
Modules/ThirdParty/KWSys/src/KWSys/Directory.cxx | 13 +-
.../ThirdParty/KWSys/src/KWSys/DynamicLoader.cxx | 51 +-
Modules/ThirdParty/KWSys/src/KWSys/EncodingCXX.cxx | 8 +-
Modules/ThirdParty/KWSys/src/KWSys/Glob.cxx | 12 -
Modules/ThirdParty/KWSys/src/KWSys/MD5.c | 10 -
Modules/ThirdParty/KWSys/src/KWSys/Process.h.in | 73 +-
Modules/ThirdParty/KWSys/src/KWSys/ProcessUNIX.c | 264 +--
Modules/ThirdParty/KWSys/src/KWSys/ProcessWin32.c | 268 ++-
.../KWSys/src/KWSys/RegularExpression.cxx | 5 -
.../ThirdParty/KWSys/src/KWSys/SharedForward.h.in | 18 -
Modules/ThirdParty/KWSys/src/KWSys/System.c | 4 -
.../KWSys/src/KWSys/SystemInformation.cxx | 144 +-
.../KWSys/src/KWSys/SystemInformation.hxx.in | 27 +
Modules/ThirdParty/KWSys/src/KWSys/SystemTools.cxx | 237 +--
.../ThirdParty/KWSys/src/KWSys/SystemTools.hxx.in | 21 +-
Modules/ThirdParty/KWSys/src/KWSys/Terminal.c | 10 -
.../KWSys/src/KWSys/kwsysPlatformTestsC.c | 18 +-
.../KWSys/src/KWSys/kwsysPlatformTestsCXX.cxx | 6 +
.../ThirdParty/KWSys/src/KWSys/testConsoleBuf.cxx | 23 +-
.../KWSys/src/KWSys/testConsoleBufChild.cxx | 1 -
.../ThirdParty/KWSys/src/KWSys/testDirectory.cxx | 79 +
.../ThirdParty/KWSys/src/KWSys/testEncoding.cxx | 8 +-
Modules/ThirdParty/KWSys/src/KWSys/testFStream.cxx | 3 -
Modules/ThirdParty/KWSys/src/KWSys/testIOS.cxx | 139 --
Modules/ThirdParty/KWSys/src/KWSys/testProcess.c | 4 +-
.../ThirdParty/KWSys/src/KWSys/testSystemTools.cxx | 57 +-
Modules/ThirdParty/MetaIO/UpdateFromUpstream.sh | 19 +-
.../ThirdParty/MetaIO/src/MetaIO/src/Copyright.txt | 30 -
.../MetaIO/src/MetaIO/src/doc/README.txt | 2 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaArray.h | 16 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaArrow.h | 16 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaBlob.h | 18 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaContour.h | 18 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaDTITube.h | 18 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaEllipse.h | 16 +-
.../MetaIO/src/MetaIO/src/metaFEMObject.h | 18 +-
.../MetaIO/src/MetaIO/src/metaGaussian.h | 16 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaGroup.h | 16 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaImage.cxx | 102 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaImage.h | 72 +-
.../MetaIO/src/MetaIO/src/metaLandmark.h | 18 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaLine.h | 18 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaMesh.h | 26 +-
.../MetaIO/src/MetaIO/src/metaObject.cxx | 37 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaObject.h | 9 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaOutput.h | 6 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaScene.h | 20 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaSurface.h | 18 +-
.../MetaIO/src/MetaIO/src/metaTransform.h | 18 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaTube.h | 18 +-
.../MetaIO/src/MetaIO/src/metaTubeGraph.h | 18 +-
.../ThirdParty/MetaIO/src/MetaIO/src/metaTypes.h | 6 +
.../ThirdParty/MetaIO/src/MetaIO/src/metaUtils.cxx | 16 +-
.../MetaIO/src/MetaIO/src/metaVesselTube.h | 18 +-
Modules/ThirdParty/PNG/UpdateFromUpstream.sh | 2 +-
Modules/ThirdParty/VNL/README.md | 7 +
Modules/ThirdParty/VNL/README.vxl | 7 -
Modules/ThirdParty/VNL/src/vxl/CMakeLists.txt | 9 -
.../vxl/config/cmake/Modules/VXLConfig.cmake.in | 4 +-
.../src/vxl/config/cmake/doxygen/doxy-notes.txt | 45 +
.../VNL/src/vxl/config/cmake/doxygen/doxyfile.in | 2 +-
.../VNL/src/vxl/config/cmake/doxygen/doxygen.cmake | 26 +-
.../vxl/config/cmake/doxygen/doxygen_makeall.cmake | 22 +-
.../VNL/src/vxl/core/vnl/algo/CMakeLists.txt | 2 +-
.../vxl/core/vnl/algo/vnl_adaptsimpson_integral.h | 3 +-
.../VNL/src/vxl/core/vnl/algo/vnl_amoeba.h | 4 +-
.../src/vxl/core/vnl/algo/vnl_bracket_minimum.h | 3 +-
.../VNL/src/vxl/core/vnl/algo/vnl_brent.h | 3 +-
.../src/vxl/core/vnl/algo/vnl_brent_minimizer.h | 4 +-
.../VNL/src/vxl/core/vnl/algo/vnl_cholesky.h | 3 +-
.../vxl/core/vnl/algo/vnl_complex_eigensystem.h | 4 +-
.../core/vnl/algo/vnl_complex_generalized_schur.h | 3 +-
.../src/vxl/core/vnl/algo/vnl_conjugate_gradient.h | 3 +-
.../VNL/src/vxl/core/vnl/algo/vnl_convolve.h | 5 +
.../VNL/src/vxl/core/vnl/algo/vnl_cpoly_roots.h | 3 +-
.../VNL/src/vxl/core/vnl/algo/vnl_determinant.h | 2 +-
.../VNL/src/vxl/core/vnl/algo/vnl_discrete_diff.h | 12 +-
.../ThirdParty/VNL/src/vxl/core/vnl/algo/vnl_fft.h | 9 +-
.../src/vxl/core/vnl/algo/vnl_gaussian_kernel_1d.h | 3 +-
.../core/vnl/algo/vnl_generalized_eigensystem.h | 3 +-
.../src/vxl/core/vnl/algo/vnl_generalized_schur.h | 3 +-
.../VNL/src/vxl/core/vnl/algo/vnl_lbfgs.cxx | 1 +
.../VNL/src/vxl/core/vnl/algo/vnl_lbfgs.h | 3 +-
.../VNL/src/vxl/core/vnl/algo/vnl_lbfgsb.h | 3 +-
.../VNL/src/vxl/core/vnl/algo/vnl_ldl_cholesky.h | 3 +-
.../vxl/core/vnl/algo/vnl_levenberg_marquardt.h | 4 +-
.../VNL/src/vxl/core/vnl/algo/vnl_lsqr.h | 4 +-
.../VNL/src/vxl/core/vnl/algo/vnl_powell.h | 3 +-
.../src/vxl/core/vnl/algo/vnl_real_eigensystem.h | 4 +-
.../VNL/src/vxl/core/vnl/algo/vnl_rnpoly_solve.h | 3 +-
.../VNL/src/vxl/core/vnl/algo/vnl_rpoly_roots.h | 3 +-
.../src/vxl/core/vnl/algo/vnl_simpson_integral.h | 3 +-
.../VNL/src/vxl/core/vnl/algo/vnl_solve_qp.h | 5 +-
.../VNL/src/vxl/core/vnl/algo/vnl_sparse_lm.h | 4 +-
.../VNL/src/vxl/core/vnl/algo/vnl_sparse_lu.h | 3 +-
.../vnl/algo/vnl_sparse_symmetric_eigensystem.h | 3 +-
Modules/ThirdParty/VNL/src/vxl/core/vxl_version.h | 2 +-
Modules/ThirdParty/VNL/src/vxl/v3p/CMakeLists.txt | 2 -
.../VNL/src/vxl/v3p/netlib/libf2c/comptry.bat | 10 +-
.../VNL/src/vxl/v3p/netlib/libf2c/scomptry.bat | 10 +-
.../vcl/compilers/VXL_COMPILER_INFO_Clang_CXX.h | 116 +-
.../vxl/vcl/compilers/VXL_COMPILER_INFO_GNU_CXX.h | 6 +-
.../vcl/compilers/VXL_COMPILER_INFO_Intel_CXX.h | 52 +-
.../vxl/vcl/compilers/VXL_COMPILER_INFO_MSVC_CXX.h | 6 +-
.../vcl/compilers/VXL_COMPILER_INFO_SunPro_CXX.h | 12 +-
.../VNL/src/vxl/vcl/vcl_compiler_detection.h | 20 +-
Modules/ThirdParty/libLBFGS/CMakeLists.txt | 21 +
Modules/ThirdParty/libLBFGS/include/lbfgs.h | 748 +++++++++
Modules/ThirdParty/libLBFGS/itk-module.cmake | 8 +
Modules/ThirdParty/libLBFGS/src/CMakeLists.txt | 26 +
Modules/ThirdParty/libLBFGS/src/arithmetic_ansi.h | 133 ++
.../libLBFGS/src/arithmetic_sse_double.h | 294 ++++
.../ThirdParty/libLBFGS/src/arithmetic_sse_float.h | 298 ++++
Modules/ThirdParty/libLBFGS/src/lbfgs.c | 1371 +++++++++++++++
Modules/ThirdParty/pygccxml/src/README-ITK.txt | 15 -
Modules/ThirdParty/pygccxml/src/README.md | 17 +
.../pygccxml/src/UpdatepygccxmlFromUpstream.sh | 8 +-
.../ThirdParty/pygccxml/src/pygccxml/__init__.py | 9 +-
.../src/pygccxml/binary_parsers/__init__.py | 42 -
.../binary_parsers/get_dll_exported_symbols.py | 307 ----
.../src/pygccxml/binary_parsers/parsers.py | 453 -----
.../src/pygccxml/binary_parsers/undname.py | 278 ----
.../pygccxml/src/pygccxml/declarations/__init__.py | 30 +-
.../src/pygccxml/declarations/algorithm.py | 42 +-
.../src/pygccxml/declarations/algorithms_cache.py | 35 +-
.../src/pygccxml/declarations/byte_info.py | 57 +
.../src/pygccxml/declarations/call_invocation.py | 9 +-
.../pygccxml/src/pygccxml/declarations/calldef.py | 123 +-
.../src/pygccxml/declarations/calldef_members.py | 60 +-
.../src/pygccxml/declarations/calldef_types.py | 6 +-
.../src/pygccxml/declarations/class_declaration.py | 191 +--
.../src/pygccxml/declarations/container_traits.py | 74 +-
.../pygccxml/src/pygccxml/declarations/cpptypes.py | 101 +-
.../src/pygccxml/declarations/decl_factory.py | 4 +-
.../src/pygccxml/declarations/decl_printer.py | 49 +-
.../src/pygccxml/declarations/decl_visitor.py | 4 +-
.../src/pygccxml/declarations/declaration.py | 51 +-
.../src/pygccxml/declarations/declaration_utils.py | 54 +-
.../pygccxml/declarations/declarations_matchers.py | 29 +-
.../src/pygccxml/declarations/elaborated_info.py | 24 +
.../src/pygccxml/declarations/enumeration.py | 37 +-
.../src/pygccxml/declarations/free_calldef.py | 4 +-
.../src/pygccxml/declarations/function_traits.py | 4 +-
.../pygccxml/declarations/has_operator_matcher.py | 16 +-
.../pygccxml/src/pygccxml/declarations/location.py | 4 +-
.../pygccxml/src/pygccxml/declarations/matchers.py | 4 +-
.../src/pygccxml/declarations/mdecl_wrapper.py | 22 +-
.../src/pygccxml/declarations/namespace.py | 101 +-
.../src/pygccxml/declarations/pattern_parser.py | 22 +-
.../src/pygccxml/declarations/runtime_errors.py | 50 +
.../pygccxml/src/pygccxml/declarations/scopedef.py | 410 ++---
.../pygccxml/declarations/smart_pointer_traits.py | 21 +-
.../src/pygccxml/declarations/templates.py | 8 +-
.../pygccxml/declarations/traits_impl_details.py | 18 +-
.../src/pygccxml/declarations/type_traits.py | 156 +-
.../pygccxml/declarations/type_traits_classes.py | 286 ++--
.../src/pygccxml/declarations/type_visitor.py | 7 +-
.../pygccxml/src/pygccxml/declarations/typedef.py | 65 +-
.../pygccxml/src/pygccxml/declarations/variable.py | 49 +-
.../src/pygccxml/declarations/xml_generators.py | 4 +-
.../pygccxml/src/pygccxml/parser/__init__.py | 20 +-
.../pygccxml/src/pygccxml/parser/config.py | 177 +-
.../src/pygccxml/parser/declarations_cache.py | 51 +-
.../src/pygccxml/parser/declarations_joiner.py | 112 ++
.../src/pygccxml/parser/directory_cache.py | 52 +-
.../pygccxml/src/pygccxml/parser/etree_scanner.py | 50 +-
.../pygccxml/src/pygccxml/parser/linker.py | 35 +-
.../pygccxml/src/pygccxml/parser/patcher.py | 69 +-
.../pygccxml/src/pygccxml/parser/project_reader.py | 86 +-
.../pygccxml/src/pygccxml/parser/scanner.py | 155 +-
.../pygccxml/src/pygccxml/parser/source_reader.py | 383 ++---
.../pygccxml/src/pygccxml/utils/__init__.py | 10 +-
.../pygccxml/src/pygccxml/utils/utils.py | 142 +-
.../pygccxml/src/pygccxml/utils/xml_generators.py | 170 ++
Modules/Video/BridgeOpenCV/CMakeLists.txt | 2 +-
Modules/Video/Core/include/itkRingBuffer.h | 2 +-
Modules/Video/Core/include/itkTemporalDataObject.h | 2 +-
.../Video/Core/include/itkTemporalProcessObject.h | 3 +-
Modules/Video/Core/include/itkTemporalRegion.h | 2 +-
Modules/Video/Core/include/itkVideoSource.h | 2 +-
Modules/Video/Core/include/itkVideoStream.h | 2 +-
Modules/Video/Core/include/itkVideoToVideoFilter.h | 2 +-
.../include/itkDecimateFramesVideoFilter.h | 2 +-
.../Filtering/include/itkFrameAverageVideoFilter.h | 2 +-
.../include/itkFrameDifferenceVideoFilter.h | 2 +-
.../include/itkImageFilterToVideoFilterWrapper.h | 2 +-
Modules/Video/IO/include/itkFileListVideoIO.h | 2 +-
.../Video/IO/include/itkFileListVideoIOFactory.h | 2 +-
Modules/Video/IO/include/itkVideoFileReader.h | 2 +-
Modules/Video/IO/include/itkVideoFileReader.hxx | 2 +
Modules/Video/IO/include/itkVideoFileWriter.h | 2 +-
Modules/Video/IO/include/itkVideoIOBase.h | 2 +-
Modules/Video/IO/include/itkVideoIOFactory.h | 32 +-
PULL_REQUEST_TEMPLATE.md | 21 +
README.md | 43 +
README.txt | 39 -
...DeformableRegistrationTestPixelCentered.png.md5 | 2 +-
...ormableRegistrationTestPixelCentered.png.sha512 | 2 +-
.../BasicFilters/AccumulateImageFilterTest.png.md5 | 2 +-
.../AccumulateImageFilterTest.png.sha512 | 2 +-
.../HeadMRVolumeBinaryProjection100.tif.md5 | 2 +-
.../HeadMRVolumeBinaryProjection100.tif.sha512 | 2 +-
.../HeadMRVolumeBinaryProjection200.tif.md5 | 2 +-
.../HeadMRVolumeBinaryProjection200.tif.sha512 | 2 +-
.../HeadMRVolumeBinaryThresholdProjection.png.md5 | 2 +-
...eadMRVolumeBinaryThresholdProjection.png.sha512 | 2 +-
.../HeadMRVolumeMaximumProjection.tif.md5 | 2 +-
.../HeadMRVolumeMaximumProjection.tif.sha512 | 2 +-
.../HeadMRVolumeMaximumProjection0.mha.sha512 | 1 +
.../HeadMRVolumeMaximumProjection1.mha.sha512 | 1 +
.../HeadMRVolumeMaximumProjection2D0.mha.sha512 | 1 +
.../HeadMRVolumeMaximumProjection2D1.tif.md5 | 2 +-
.../HeadMRVolumeMaximumProjection2D1.tif.sha512 | 2 +-
.../HeadMRVolumeMeanProjection.tif.md5 | 2 +-
.../HeadMRVolumeMeanProjection.tif.sha512 | 2 +-
.../HeadMRVolumeMedianProjection.tif.md5 | 2 +-
.../HeadMRVolumeMedianProjection.tif.sha512 | 2 +-
.../HeadMRVolumeMinimumProjection.tif.md5 | 2 +-
.../HeadMRVolumeMinimumProjection.tif.sha512 | 2 +-
...HeadMRVolumeStandardDeviationProjection.tif.md5 | 2 +-
...dMRVolumeStandardDeviationProjection.tif.sha512 | 2 +-
.../BasicFilters/HeadMRVolumeSumProjection.tif.md5 | 2 +-
.../HeadMRVolumeSumProjection.tif.sha512 | 2 +-
.../RelabelComponentImageFilterTest.png.md5 | 2 +-
.../RelabelComponentImageFilterTest.png.sha512 | 2 +-
.../VectorResampleImageFilterTest.png.md5 | 2 +-
.../VectorResampleImageFilterTest.png.sha512 | 2 +-
...ectorIndexSelectionCastImageFilterTest1.mha.md5 | 2 +-
...orIndexSelectionCastImageFilterTest1.mha.sha512 | 2 +-
...ectorIndexSelectionCastImageFilterTest2.mha.md5 | 2 +-
...orIndexSelectionCastImageFilterTest2.mha.sha512 | 2 +-
...ectorIndexSelectionCastImageFilterTest3.mha.md5 | 2 +-
...orIndexSelectionCastImageFilterTest3.mha.sha512 | 2 +-
.../DigitallyReconstructedRadiograph1.png.md5 | 2 +-
.../DigitallyReconstructedRadiograph1.png.sha512 | 2 +-
.../Filtering/ResampleImageFilter2Test4.png.md5 | 2 +-
.../Filtering/ResampleImageFilter2Test4.png.sha512 | 2 +-
.../Filtering/ResampleImageFilter2Test5.png.md5 | 2 +-
.../Filtering/ResampleImageFilter2Test5.png.sha512 | 2 +-
.../ResampleImageFilter3Test1PixelCentered.png.md5 | 2 +-
...sampleImageFilter3Test1PixelCentered.png.sha512 | 2 +-
.../ResampleImageFilter6PixelCentered.png.md5 | 2 +-
.../ResampleImageFilter6PixelCentered.png.sha512 | 2 +-
...ResampleImageFilter9TestPixelCentered.1.png.md5 | 2 +-
...ampleImageFilter9TestPixelCentered.1.png.sha512 | 2 +-
...ResampleImageFilter9TestPixelCentered.2.png.md5 | 2 +-
...ampleImageFilter9TestPixelCentered.2.png.sha512 | 2 +-
...ResampleImageFilter9TestPixelCentered.3.png.md5 | 2 +-
...ampleImageFilter9TestPixelCentered.3.png.sha512 | 2 +-
.../ResampleImageFilter9TestPixelCentered.png.md5 | 2 +-
...esampleImageFilter9TestPixelCentered.png.sha512 | 2 +-
Testing/Data/Baseline/IO/113766.003.001.mha.md5 | 2 +-
Testing/Data/Baseline/IO/113766.003.001.mha.sha512 | 2 +-
Testing/Data/Baseline/IO/19771.002.001.mha.md5 | 2 +-
Testing/Data/Baseline/IO/19771.002.001.mha.sha512 | 2 +-
Testing/Data/Baseline/IO/3868-2-100.mha.md5 | 2 +-
Testing/Data/Baseline/IO/3868-2-100.mha.sha512 | 2 +-
Testing/Data/Baseline/IO/I.001.mha.md5 | 2 +-
Testing/Data/Baseline/IO/I.001.mha.sha512 | 2 +-
.../Baseline/IO/NrrdImageReadWriteTest1.nrrd.md5 | 2 +-
.../IO/NrrdImageReadWriteTest1.nrrd.sha512 | 2 +-
Testing/Data/Baseline/IO/RGBTestImage.tif.md5 | 2 +-
Testing/Data/Baseline/IO/RGBTestImage.tif.sha512 | 2 +-
.../Data/Baseline/IO/RGBTestImageCCITTFax3.tif.md5 | 2 +-
.../Baseline/IO/RGBTestImageCCITTFax3.tif.sha512 | 2 +-
.../Data/Baseline/IO/RGBTestImageCCITTFax4.tif.md5 | 2 +-
.../Baseline/IO/RGBTestImageCCITTFax4.tif.sha512 | 2 +-
Testing/Data/Baseline/IO/RGBTestImageGray.tif.md5 | 2 +-
.../Data/Baseline/IO/RGBTestImageGray.tif.sha512 | 2 +-
.../Baseline/IO/RGBTestImageHuffmanRLE.tif.md5 | 2 +-
.../Baseline/IO/RGBTestImageHuffmanRLE.tif.sha512 | 2 +-
Testing/Data/Baseline/IO/RGBTestImageJPEG.tif.md5 | 2 +-
.../Data/Baseline/IO/RGBTestImageJPEG.tif.sha512 | 2 +-
Testing/Data/Baseline/IO/RGBTestImageLZW.tif.md5 | 2 +-
.../Data/Baseline/IO/RGBTestImageLZW.tif.sha512 | 2 +-
Testing/Data/Baseline/IO/RGBTestImageNone.tif.md5 | 2 +-
.../Data/Baseline/IO/RGBTestImageNone.tif.sha512 | 2 +-
.../Data/Baseline/IO/RGBTestImagePackBits.tif.md5 | 2 +-
.../Baseline/IO/RGBTestImagePackBits.tif.sha512 | 2 +-
Testing/Data/Baseline/IO/RGBTestImageZIP.tif.md5 | 2 +-
.../Data/Baseline/IO/RGBTestImageZIP.tif.sha512 | 2 +-
.../Data/Baseline/IO/cthead1-unitspacing.tif.md5 | 1 +
.../Baseline/IO/cthead1-unitspacing.tif.sha512 | 1 +
Testing/Data/Baseline/IO/cthead1.tif.md5 | 2 +-
Testing/Data/Baseline/IO/cthead1.tif.sha512 | 2 +-
...ointEntropyHistogramAfterRegistration.1.png.md5 | 2 +-
...tEntropyHistogramAfterRegistration.1.png.sha512 | 2 +-
.../JointEntropyHistogramAfterRegistration.png.md5 | 2 +-
...intEntropyHistogramAfterRegistration.png.sha512 | 2 +-
.../HoughTransformTwoCirclesTest.png.md5 | 2 +-
.../HoughTransformTwoCirclesTest.png.sha512 | 2 +-
Testing/Data/Baseline/itkDCMTKColorImage.png.md5 | 1 +
.../Data/Baseline/itkDCMTKColorImage.png.sha512 | 1 +
.../itkDCMTKSeriesImageOrientationWrite1.mha.md5 | 1 +
...itkDCMTKSeriesImageOrientationWrite1.mha.sha512 | 1 +
.../ImageOrientation.1.dcm.md5 | 1 +
.../ImageOrientation.1.dcm.sha512 | 1 +
.../ImageOrientation.2.dcm.md5 | 1 +
.../ImageOrientation.2.dcm.sha512 | 1 +
.../ImageOrientation.3.dcm.md5 | 1 +
.../ImageOrientation.3.dcm.sha512 | 1 +
Testing/Data/Input/RGBDicomTest.dcm.md5 | 1 +
Testing/Data/Input/RGBDicomTest.dcm.sha512 | 1 +
Testing/TestExternal/CMakeLists.txt | 2 +-
Utilities/DevelopmentSetupScripts/SetupHooks.sh | 4 +-
Utilities/Doxygen/CMakeLists.txt | 15 +
Utilities/Doxygen/doxygen.config.in | 3 +-
Utilities/Doxygen/serviceWorker.js.in | 15 +
Utilities/Hooks/pre-commit | 4 +-
Utilities/KWStyle/BuildKWStyle.cmake | 3 +-
.../Maintenance/ContentLinkSynchronization.sh | 46 +-
Utilities/Maintenance/{README => README.md} | 0
.../Maintenance/UpdateThirdPartyFromUpstream.sh | 16 +-
Utilities/Maintenance/WhatModulesITK.py | 5 +-
Wrapping/CMakeLists.txt | 16 +-
Wrapping/ConfigureWrapping.cmake | 10 +-
Wrapping/Generators/CastXML/CMakeLists.txt | 25 +-
Wrapping/Generators/Doc/CMakeLists.txt | 33 +-
Wrapping/Generators/Doc/doxy2swig.py | 10 +-
Wrapping/Generators/Doc/doxygen.config.in | 2 +-
Wrapping/Generators/Doc/itk_doxy2swig.py | 53 +-
Wrapping/Generators/Explicit/CMakeLists.txt | 3 +
Wrapping/Generators/Java/CMakeLists.txt | 4 +
Wrapping/Generators/Python/CMakeLists.txt | 45 +-
Wrapping/Generators/Python/Tests/CMakeLists.txt | 9 +
.../Python/Tests/MeanImageFilterFunctionCall.py | 28 +
Wrapping/Generators/Python/Tests/extras.py | 7 +
Wrapping/Generators/Python/itkExtras.py | 12 +-
Wrapping/Generators/Python/itkPyITKCommonCAPI.h | 10 +-
Wrapping/Generators/Python/itkTemplate.py | 57 +-
Wrapping/Generators/Python/main_module_ext.i.in | 4 -
Wrapping/Generators/Ruby/CMakeLists.txt | 4 +
Wrapping/Generators/SwigInterface/CMakeLists.txt | 7 +-
Wrapping/Generators/SwigInterface/igenerator.py | 4 +-
Wrapping/Generators/Tcl/CMakeLists.txt | 4 +
Wrapping/WrapITKTypes.cmake | 5 +
.../images/MeanImageFilterFunctionCall.png.md5 | 1 +
.../images/MeanImageFilterFunctionCall.png.sha512 | 1 +
Wrapping/images/cthead1UC.png.md5 | 1 +
Wrapping/images/cthead1UC.png.sha512 | 1 +
circle.yml | 55 -
.../MD5/0067daa32b0ede1a20e350bd646f808b | Bin 133458 -> 0 bytes
.../MD5/013c7d3169641ff889c590605fec5533 | Bin 0 -> 764 bytes
.../MD5/0320a4dd7039a3b39e0437f04e2302d1 | Bin 0 -> 196839 bytes
.../MD5/033189a0a6035962ad5d8928e97dc7a8 | 780 +++++++++
.../MD5/082be88d8710fed65c2b130b6e3561aa | Bin 3173 -> 0 bytes
.../MD5/08d6dac958764a05b02eb2af1424aa3c | Bin 0 -> 6148 bytes
.../MD5/09852e1fb126d77599f7955c2012bed9 | 134 ++
.../MD5/0cbf87a5dd1c5013f6a21f431667900a | 34 +
.../MD5/0d4600a67572c5e88b5b1849613102ff | Bin 3258 -> 0 bytes
.../MD5/1089c90a810277f49cd25856bbacc26d | Bin 0 -> 62320 bytes
.../MD5/11305e581c031544e05ae13b96ae3d6a | Bin 0 -> 28920 bytes
.../MD5/11df885ebc8453651c0dbd70838c31f3 | Bin 0 -> 193 bytes
.../MD5/12aa8b8fb552a1fa1cfcfc7086c21757 | Bin 0 -> 393537 bytes
.../MD5/133e9ae8117175e1c13916f7ba9bb1d9 | Bin 3173 -> 0 bytes
.../MD5/13c4f808a23354b7357ba1b0e30cdc6c | Bin 526833 -> 0 bytes
.../MD5/13cd69b2cbc6980d0ce7abba66c7fa0d | Bin 15877 -> 0 bytes
.../MD5/14e5420d4e125082f73690dbab289be6 | Bin 0 -> 668 bytes
.../MD5/153daba74f22a488a5a0610506331215 | 12 +
.../MD5/1ac3b5cad012a3d3cc41638494ccbb8c | Bin 15894 -> 0 bytes
.../MD5/1b2166bc4fb73ed378be389cd9db544e | Bin 16175 -> 0 bytes
.../MD5/1c84d9617b019147f77ff17199786e93 | 570 +++++++
.../MD5/201104de65ced0607ba62e995251a7ea | Bin 0 -> 8482 bytes
.../MD5/2512e2b9e67bcaa95112510c354e116d | 138 ++
.../MD5/2547b3bec44324176fea022ff43ed591 | Bin 799 -> 0 bytes
.../MD5/27bc6586044457622fa9a1d4e6f5c266 | Bin 0 -> 1848694 bytes
.../MD5/2912660762979107d5f76d1dc5b97487 | Bin 0 -> 14400320 bytes
.../MD5/291e687225edebcd351ede8bf13d0b2c | Bin 0 -> 19226 bytes
.../MD5/2a6e7fc9cfa4cdf71a36675a86ae8da8 | Bin 8445 -> 0 bytes
.../MD5/2e715e7a363d7a5ea9af4165f71b455c | Bin 3173 -> 0 bytes
.../MD5/2ec5c16530e1aece41932f00231db847 | Bin 0 -> 28936 bytes
.../MD5/2f538837ace3a1a7ba56cb0d955f4a30 | 11 +
.../MD5/30b2fce9bc92fd9eafd9d4e8dd82c130 | 436 +++++
.../MD5/33aa473b7df3faacf5fa0976ab4205d3 | Bin 0 -> 3224 bytes
.../MD5/3772bd318eeb6d624ce7084ec4173eee | Bin 0 -> 174274 bytes
.../MD5/377e602800c18624d9bc7a32fa706b97 | Bin 12483 -> 0 bytes
.../MD5/3978215a4bd58093ceae6888d6ea8525 | Bin 29034 -> 0 bytes
.../MD5/3a532b7fc52f547773597e6dca70dffc | 34 +
.../MD5/3a7d9520aac244d878a4cf4ea6940922 | 11 +
.../MD5/3b34d5c29a3095348073e0b6084f9f8a | Bin 0 -> 7200000 bytes
.../MD5/41f9a4ca102661a22d00303949cfcf07 | Bin 0 -> 67752 bytes
.../MD5/43e7bf82e86355babdbcbe598ab1a5a9 | Bin 29003 -> 0 bytes
.../MD5/449ca444a714efab611e2f7fb5fc2e05 | Bin 0 -> 786758 bytes
.../MD5/483b85625872d29298802122d3cf22cc | Bin 0 -> 526774 bytes
.../MD5/49ae473d977c42fda8805ae9caef8dd8 | 13 +
.../MD5/4a4d47d29f3a4484e2d7cf01409c5615 | Bin 0 -> 166 bytes
.../MD5/4b680b630223022cb036a3d425aa8a04 | Bin 0 -> 168 bytes
.../MD5/4c3cbd8f6f25f884e0635ab324d977a8 | 170 ++
.../MD5/4c5176485da86c5a33b734aeb9bba390 | 15 +
.../MD5/506916dcb62b087048def7f2b6a595cc | Bin 0 -> 3225 bytes
.../MD5/51f1fe065e477500d45c305d21743ecf | Bin 133388 -> 0 bytes
.../MD5/526e86825d47b8278b1a69d35c39409f | Bin 0 -> 15862 bytes
.../MD5/52de5c91a0a08b964e4fc9a9bef1965d | Bin 200 -> 0 bytes
.../MD5/52eb9717d0f28283328556fd57bb403f | Bin 0 -> 288 bytes
.../MD5/53faff1436f096057bd23cafc1b66360 | 314 ++++
.../MD5/565f590fdc32d1d7236eb8b576a787ae | Bin 0 -> 12519 bytes
.../MD5/59a2730bb309fa7a4131969e81a134a4 | Bin 0 -> 133291 bytes
.../MD5/59ae96a8485fd02ed8acfe281a9b937b | Bin 0 -> 250263 bytes
.../MD5/5ad474d9f562e20907f77dbf4ff51e0c | Bin 0 -> 190 bytes
.../MD5/5ae74d0390924e1d58db04f8de895f6a | Bin 0 -> 1179648 bytes
.../MD5/5bb4646c8660bc41d864005500ceef44 | Bin 0 -> 344 bytes
.../MD5/5ca62eb3942ad84577335a37ded42cce | Bin 2189 -> 0 bytes
.../MD5/5cd36b738657adcf824558429f7bf930 | Bin 0 -> 28980 bytes
.../MD5/5cd48d64de3f6119fe890c759c604aa7 | Bin 0 -> 3225 bytes
.../MD5/5e9f45edd929308ebf3845abfcf93678 | Bin 0 -> 134092 bytes
.../MD5/5f12321caf28dc38476ca6837060d1c2 | Bin 29010 -> 0 bytes
.../MD5/60e2b992941a86684363fee32f836bb0 | Bin 85398 -> 0 bytes
.../MD5/63c36591e15a7694831f468a36fb8089 | Bin 0 -> 597 bytes
.../MD5/646a912646b039a859903d934fafbacd | Bin 0 -> 3225 bytes
.../MD5/64c6cd3fe41bcf784c8e4bb7c0a0eb13 | Bin 407 -> 0 bytes
.../MD5/67494fbddf631d1ad4e557f6010d0293 | 12 +
.../MD5/67d709c91df48ddc0613781130fa934e | Bin 8445 -> 0 bytes
.../MD5/6856cef94e0dac1ebfdb2ed450691d9e | 170 ++
.../MD5/691a82e261791eefd9b8f9ee2d4e4538 | Bin 0 -> 441 bytes
.../MD5/6bffad569053e24c9ffae43c36b3c4c8 | Bin 367 -> 0 bytes
.../MD5/6f2b0a157efc77e78817b084ed5496fb | 15 +
.../MD5/70d4f0f78345be57a0bbfe32b26ab57f | Bin 3173 -> 0 bytes
.../MD5/73232c180a10bb21e19b277c692e13e9 | Bin 0 -> 8482 bytes
.../MD5/77efce1a1f2991f7562192e493ad43f7 | Bin 10896 -> 0 bytes
.../MD5/7ba915a9d1fabb6cd7aed5bb0ac7bf7d | Bin 0 -> 6148 bytes
.../MD5/7d4d0335c12b4676140e907bf493d72b | Bin 0 -> 3225 bytes
.../MD5/7ec13347e15145a58075e0b8b7a308fd | Bin 0 -> 264623 bytes
.../MD5/815661c09054fa7724282a252617061f | Bin 3173 -> 0 bytes
.../MD5/822d5efacd963ea2e4f8db3b82ccfffc | Bin 0 -> 589824 bytes
.../MD5/84b3f277b827fb54336f8a55a218fbcb | Bin 0 -> 133412 bytes
.../MD5/87ac20d6bc6602ee3781ed93691f418a | Bin 3173 -> 0 bytes
.../MD5/8800b514f88b18b47d3863791f7502bf | 0
.../MD5/8ab5749067c1452f4c3ac7cd2b48f72a | 139 ++
.../MD5/8b35ff586971ae9a4e9610454ad0e79d | Bin 0 -> 12519 bytes
.../MD5/8cc0409a20b74a5a58c0472e94ab9f89 | Bin 0 -> 474843 bytes
.../MD5/8cf5082628fa7b03770cebd8b79ecf1c | Bin 28628 -> 0 bytes
.../MD5/8e84ddc50e1790fd31cb5a2945ae9314 | Bin 368 -> 0 bytes
.../MD5/906a457e893f3a6e385724f2902b0aaa | Bin 0 -> 664 bytes
.../MD5/918fd28f3e30bdf950794904a8defb9f | Bin 0 -> 356 bytes
.../MD5/93989ec805c7c313e4dafc5f7cd4f5dc | Bin 369 -> 0 bytes
.../MD5/9653cf178d82b2989f6012a89b782445 | Bin 0 -> 10875 bytes
.../MD5/978dd5bb402637b949a17e2d39473595 | Bin 0 -> 318 bytes
.../MD5/97da7cc086d171e5496377d6d2e18bc3 | 26 +
.../MD5/986024dc35957780046c497c91e93c4a | Bin 68 -> 0 bytes
.../MD5/995fb0b34341aecc9da280253f199d42 | Bin 0 -> 173 bytes
.../MD5/998269ab74069be1f2fe7d24e01fb33a | Bin 8445 -> 0 bytes
.../MD5/9a355e69f503645f22053d0cb2c199a9 | Bin 0 -> 10757 bytes
.../MD5/9a5db0c58fe82db02ccb3fce6786e292 | Bin 197 -> 0 bytes
.../MD5/9b784ba9db935382f9ab2e133358533d | Bin 0 -> 13120 bytes
.../MD5/9e0f7f8a8a8b269a39286ef10fe4de27 | Bin 371 -> 0 bytes
.../MD5/9e45bc9de55389fac3cc513ed22829f8 | Bin 0 -> 196839 bytes
.../MD5/9e880269bfbfdf952da80c3cd937bef3 | Bin 62344 -> 0 bytes
.../MD5/a049f9e469a4e81aedeef337d87f7250 | Bin 0 -> 86 bytes
.../MD5/a09b06362e5fc43a79005d44261185bd | Bin 380 -> 0 bytes
.../MD5/a1c0a8816b07bbf63bb67104aaa86a9c | Bin 0 -> 15845 bytes
.../MD5/a2032d8fad6a253973d1f7038cec1b14 | Bin 0 -> 3225 bytes
.../MD5/a2aeabe2d860519d551fee1c2208e6ee | Bin 6149 -> 0 bytes
.../MD5/a2eb9116de0f28eb6c04049eca4ef19b | Bin 28966 -> 0 bytes
.../MD5/a4f5096877cb3b62c2b384499048684d | 314 ++++
.../MD5/a58abbc103e4d07fbf4c0fc7e44b7d37 | 311 ++++
.../MD5/a6a231692f5fe71c7f88d0cdaf3ec99b | Bin 524607 -> 0 bytes
.../MD5/aa4d6cfc02e99b964166967c15686a8d | 24 +
.../MD5/aab8c9e2a9da8da53a800e5cff37eab4 | Bin 380 -> 0 bytes
.../MD5/aecd5ea7ec01bef77c4443636f784b4f | Bin 0 -> 2359296 bytes
.../MD5/b00c89d9ce2ce0ab3638e0d962c923da | Bin 502 -> 0 bytes
.../MD5/b0ca5d43a7a783adf68c9d04dd3f5c8d | Bin 0 -> 6201 bytes
.../MD5/b13acc646d0db0ab507025735d837f25 | Bin 195 -> 0 bytes
.../MD5/b337273ad4c66c4b3212bd6d4f5f3875 | Bin 0 -> 28971 bytes
.../MD5/b8cacd99f9284149d1df2b53268687a4 | Bin 0 -> 366 bytes
.../MD5/b907aeb6d3f0a046362dd74a0d54c279 | Bin 0 -> 264528 bytes
.../MD5/b91d05b2ec4b57c166596644ba1b1a05 | 12 +
.../MD5/b97acda02bc6dde397182c4452adb83a | 1102 +++++++++++++
.../MD5/ba448958b65525466fdbe13c8a347dcf | Bin 0 -> 478 bytes
.../MD5/ba6c4d4a85c4752a9204c4b2a8c270e6 | Bin 0 -> 526679 bytes
.../MD5/c23d09928351277145afd8d5e30dd2f4 | 14 +
.../MD5/c2c7108d9677c3cd61e2abc7137e9469 | Bin 0 -> 3225 bytes
.../MD5/c2ccfc225bf10d0fe0357726f9c1accb | Bin 0 -> 534 bytes
.../MD5/c366ce04db1592ca443e846fd8f2120f | Bin 0 -> 2241 bytes
.../MD5/c69814d06a545a3d8618e58a260037e5 | Bin 0 -> 3225 bytes
.../MD5/c7a07dedfa15d7025e13d4b7e2e3f318 | Bin 12483 -> 0 bytes
.../MD5/ca0ef78bc11b6e0fd8b4b2bd2d061819 | Bin 217 -> 0 bytes
.../MD5/cca0407a9f6708d0bd7383c63859f047 | 14 +
.../MD5/ce8a777b753d31e2cf8555555da723b4 | Bin 10778 -> 0 bytes
.../MD5/d60d5092d022ed88bdb57404260540e7 | Bin 474845 -> 0 bytes
.../MD5/d73ad186fc8384186c5b4f6f231677e3 | 10 +
.../MD5/d77cfc74df8ea32d5cb379792fd8e0bb | Bin 214 -> 0 bytes
.../MD5/d7b9cf1f94c6d456c38c7c15f0d6e177 | Bin 0 -> 171 bytes
.../MD5/d9d8a6f61ed935787ed84308b5680597 | Bin 0 -> 29002 bytes
.../MD5/db201e995a528ddc5c3d9f4eddb69008 | 158 ++
.../MD5/dcb2687c19f51e4744e29e46066e0ae7 | Bin 192 -> 0 bytes
.../MD5/dd507b015af09d36cee43914295a7c9d | Bin 0 -> 134092 bytes
.../MD5/df9d9d13bf7b74d017c800cf67735fe9 | Bin 0 -> 309 bytes
.../MD5/e109bbba64f7de2bda08a5f125ca776e | 116 ++
.../MD5/e1f49e7c2d004e8538898a68f7e08917 | Bin 0 -> 8482 bytes
.../MD5/e2f3ae52040bd1980138ec1ce7860589 | 170 ++
.../MD5/e3847727717b849a08ec9b561512b01e | Bin 13134 -> 0 bytes
.../MD5/e40da5621068b2e2f454e02d46d3b19b | Bin 0 -> 12519 bytes
.../MD5/e5afc2d6bf2ef67c08155e21610b66b2 | Bin 0 -> 664 bytes
.../MD5/e5f4ff3484882bbe93ed6c827b716645 | Bin 526710 -> 0 bytes
.../MD5/e7b7fe56623cc4ecdd1f0c85a05a6182 | Bin 0 -> 1030 bytes
.../MD5/e90ba239ce39a18e05adc0d0ea1a5d35 | Bin 300 -> 0 bytes
.../MD5/e91f4ce7d8fc14834054ba9eb577ad08 | 12 +
.../MD5/eac2fb7675945bd76aecd867f7330c59 | Bin 0 -> 67873 bytes
.../MD5/eb7c2410ab4c2a6f1116e52d9e2b42a0 | Bin 0 -> 28602 bytes
.../MD5/ebc6f82318338cd6f711b49be667f55f | Bin 76331 -> 0 bytes
.../MD5/ebf123e67401ec93877298d6ef53909e | Bin 1062 -> 0 bytes
.../MD5/ec3cf5671f67feb828325b444d891370 | Bin 0 -> 32394 bytes
.../MD5/ecf0225415e798590d8279a8a123d5f9 | Bin 0 -> 76299 bytes
.../MD5/ee87a6fdee961da3da7e8bd3700fea0c | Bin 7449 -> 0 bytes
.../MD5/ef0fc3dbff662e3831d2942d1b0c3bc5 | Bin 12483 -> 0 bytes
.../MD5/ef21849964126273741031b068f77183 | Bin 0 -> 13102 bytes
.../MD5/f291c30658c3e4d83d78b5d2e2aac92c | Bin 131394 -> 0 bytes
.../MD5/f521bd34b40a7300507aa2fe7e4052f9 | Bin 390 -> 0 bytes
.../MD5/f61982917bbcddb7c2629373163293b7 | Bin 12483 -> 0 bytes
.../MD5/f9380ab1b77d90a9b02cd4b11b3a706f | Bin 352 -> 0 bytes
.../MD5/f9691da0bfc865a2a67e649d7040ef4b | Bin 0 -> 356 bytes
.../MD5/fcbef0cacb7a4aa106083d54f5c07170 | 15 +
.../MD5/ff1ae4538de5d7eb3c0f08abc9ed3c7e | Bin 0 -> 134092 bytes
2551 files changed, 29735 insertions(+), 17795 deletions(-)
create mode 100644 .circleci/config.yml
create mode 100644 CMake/FindGTest.cmake
create mode 100644 CMake/FindICU.cmake
create mode 100644 CMake/GoogleTest.cmake
create mode 100644 CMake/ITKInternalConfig.cmake
create mode 100644 GettingStarted.md
delete mode 100644 GettingStarted.txt
create mode 100644 ISSUE_TEMPLATE.md
delete mode 100644 Modules/Core/Common/src/itkPThreadPool.cxx
create mode 100644 Modules/Core/Common/src/itkThreadPoolPosix.cxx
create mode 100644 Modules/Core/Common/src/itkThreadPoolWin32.cxx
delete mode 100644 Modules/Core/Common/src/itkWinThreadPool.cxx
create mode 100644 Modules/Core/Common/wrapping/itkFloatingPointExceptions.wrap
create mode 100644 Modules/Core/TestKernel/include/itkGTest.h
create mode 100644 Modules/Core/TestKernel/include/itkGTestPredicate.h
create mode 100644 Modules/Core/TestKernel/include/itkGTestTypedefsAndConstructors.h
create mode 100644 Modules/Core/TestKernel/test/itkGoogleTest.cxx
create mode 100644 Modules/Core/TestKernel/test/itkGoogleTestFixture.cxx
create mode 100644 Modules/Filtering/Deconvolution/test/Baseline/itkRichardsonLucyDeconvolutionImageFilterGaussianKernelNonNullImageOriginTest.nrrd.md5
create mode 100644 Modules/Filtering/Deconvolution/test/Baseline/itkRichardsonLucyDeconvolutionImageFilterGaussianKernelNonNullImageOriginTest.nrrd.sha512
create mode 100644 Modules/Filtering/ImageGrid/include/itkSliceImageFilter.h
create mode 100644 Modules/Filtering/ImageGrid/include/itkSliceImageFilter.hxx
create mode 100644 Modules/Filtering/ImageGrid/test/itkSliceImageFilterTest.cxx
create mode 100644 Modules/Filtering/ImageIntensity/include/itkArithmeticOpsFunctors.h
create mode 100644 Modules/Filtering/ImageIntensity/include/itkBitwiseOpsFunctors.h
create mode 100644 Modules/Filtering/ImageIntensity/test/itkArithmeticOpsFunctorsTest.cxx
create mode 100644 Modules/Filtering/ImageIntensity/test/itkBitwiseOpsFunctorsTest.cxx
delete mode 100644 Modules/Filtering/LabelMap/test/itkLabelImageToShapeLabelMapFilterTest2.cxx
create mode 100644 Modules/Filtering/LabelMap/test/itkShapeLabelMapFilterGTest.cxx
create mode 100644 Modules/Filtering/MathematicalMorphology/include/itkMaskedMovingHistogramImageFilter.h
rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/include/itkMaskedMovingHistogramImageFilter.hxx (100%)
create mode 100644 Modules/Filtering/MathematicalMorphology/include/itkMaskedRankImageFilter.h
rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/include/itkMaskedRankImageFilter.hxx (100%)
create mode 100644 Modules/Filtering/MathematicalMorphology/include/itkRankHistogram.h
create mode 100644 Modules/Filtering/MathematicalMorphology/include/itkRankImageFilter.h
rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/include/itkRankImageFilter.hxx (100%)
create mode 100644 Modules/Filtering/MathematicalMorphology/test/Baseline/cthead1RegionalMaximal-ref1.png.sha512
create mode 100644 Modules/Filtering/MathematicalMorphology/test/Baseline/cthead1RegionalMaximal-ref2.png.sha512
delete mode 100644 Modules/Filtering/MathematicalMorphology/test/Baseline/cthead1RegionalMaximal-ref2_1.png.sha512
delete mode 100644 Modules/Filtering/MathematicalMorphology/test/Baseline/cthead1RegionalMaximal-ref2_2.png.sha512
create mode 100644 Modules/Filtering/MathematicalMorphology/test/Baseline/cthead1RegionalMinimal-ref1.png.sha512
create mode 100644 Modules/Filtering/MathematicalMorphology/test/Baseline/cthead1RegionalMinimal-ref2.png.sha512
delete mode 100644 Modules/Filtering/MathematicalMorphology/test/Baseline/cthead1RegionalMinimal-ref2_1.png.sha512
delete mode 100644 Modules/Filtering/MathematicalMorphology/test/Baseline/cthead1RegionalMinimal-ref2_2.png.sha512
rename {Testing/Data/Baseline/Review => Modules/Filtering/MathematicalMorphology/test/Baseline}/itkMaskedRankImageFilter10.png.md5 (100%)
rename {Testing/Data/Baseline/Review => Modules/Filtering/MathematicalMorphology/test/Baseline}/itkMaskedRankImageFilter10.png.sha512 (100%)
rename {Testing/Data/Baseline/Review => Modules/Filtering/MathematicalMorphology/test/Baseline}/itkMaskedRankImageFilter3.png.md5 (100%)
rename {Testing/Data/Baseline/Review => Modules/Filtering/MathematicalMorphology/test/Baseline}/itkMaskedRankImageFilter3.png.sha512 (100%)
rename {Testing/Data/Baseline/Review => Modules/Filtering/MathematicalMorphology/test/Baseline}/itkRankImageFilter10.png.md5 (100%)
rename {Testing/Data/Baseline/Review => Modules/Filtering/MathematicalMorphology/test/Baseline}/itkRankImageFilter10.png.sha512 (100%)
rename {Testing/Data/Baseline/Review => Modules/Filtering/MathematicalMorphology/test/Baseline}/itkRankImageFilter3.png.md5 (100%)
rename {Testing/Data/Baseline/Review => Modules/Filtering/MathematicalMorphology/test/Baseline}/itkRankImageFilter3.png.sha512 (100%)
rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/test/itkMapMaskedRankImageFilterTest.cxx (100%)
rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/test/itkMapRankImageFilterTest.cxx (100%)
rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/test/itkMaskedRankImageFilterTest.cxx (100%)
rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/test/itkRankImageFilterTest.cxx (100%)
create mode 100644 Modules/IO/Bruker/CMakeLists.txt
create mode 100644 Modules/IO/Bruker/include/itkBruker2dseqImageIO.h
create mode 100644 Modules/IO/Bruker/include/itkBruker2dseqImageIOFactory.h
create mode 100644 Modules/IO/Bruker/itk-module.cmake
create mode 100644 Modules/IO/Bruker/src/CMakeLists.txt
create mode 100644 Modules/IO/Bruker/src/itkBruker2dseqImageIO.cxx
create mode 100644 Modules/IO/Bruker/src/itkBruker2dseqImageIOFactory.cxx
create mode 100644 Modules/IO/Bruker/test/Baseline/PV5.1_FSE_INT16.mha.md5
create mode 100644 Modules/IO/Bruker/test/Baseline/PV5.1_FSE_INT16.mha.sha512
create mode 100644 Modules/IO/Bruker/test/Baseline/PV6.0_FLASH_FLOAT32.mha.md5
create mode 100644 Modules/IO/Bruker/test/Baseline/PV6.0_FLASH_FLOAT32.mha.sha512
create mode 100644 Modules/IO/Bruker/test/Baseline/PV6.0_FLASH_INT16.mha.md5
create mode 100644 Modules/IO/Bruker/test/Baseline/PV6.0_FLASH_INT16.mha.sha512
create mode 100644 Modules/IO/Bruker/test/Baseline/PV6.0_FLASH_UINT8.mha.md5
create mode 100644 Modules/IO/Bruker/test/Baseline/PV6.0_FLASH_UINT8.mha.sha512
create mode 100644 Modules/IO/Bruker/test/CMakeLists.txt
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/.DS_Store.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/.DS_Store.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/.DS_Store.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/.DS_Store.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/2dseq.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/2dseq.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/d3proc.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/d3proc.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/id.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/id.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/meta.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/meta.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/procs.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/procs.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/reco.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/reco.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/roi.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/roi.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/visu_pars.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/visu_pars.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/AdjStatePerScan.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/AdjStatePerScan.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/acqp.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/acqp.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/configscan.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/configscan.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/method.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/method.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/1/2dseq.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/1/2dseq.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/1/id.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/1/id.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/1/methreco.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/1/methreco.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/1/procs.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/1/procs.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/1/reco.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/1/reco.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/1/visu_pars.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/1/visu_pars.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/2/2dseq.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/2/2dseq.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/2/id.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/2/id.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/2/methreco.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/2/methreco.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/2/procs.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/2/procs.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/2/reco.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/2/reco.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/2/visu_pars.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/2/visu_pars.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/2dseq.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/2dseq.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/id.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/id.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/methreco.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/methreco.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/procs.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/procs.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/reco.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/reco.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/visu_pars.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/visu_pars.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pulseprogram.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pulseprogram.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/specpar.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/specpar.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/uxnmr.info.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/uxnmr.info.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/uxnmr.par.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/uxnmr.par.sha512
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/visu_pars.md5
create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/visu_pars.sha512
create mode 100644 Modules/IO/Bruker/test/itkBrukerImageTest.cxx
create mode 100644 Modules/IO/Bruker/wrapping/CMakeLists.txt
create mode 100644 Modules/IO/Bruker/wrapping/itkBruker2dseqImageIO.wrap
create mode 100644 Modules/IO/DCMTK/test/itkDCMTKRGBImageIOTest.cxx
delete mode 100644 Modules/IO/GE/include/Ge4xHdr.h
delete mode 100644 Modules/IO/GE/include/Ge5xHdr.h
create mode 100644 Modules/IO/GE/src/Ge4xHdr.h
create mode 100644 Modules/IO/GE/src/Ge5xHdr.h
create mode 100644 Modules/IO/ImageBase/test/Input/Test64bit.mha.md5
create mode 100644 Modules/IO/ImageBase/test/Input/Test64bit.mha.sha512
create mode 100644 Modules/IO/ImageBase/test/Input/Test64bit.nrrd.md5
create mode 100644 Modules/IO/ImageBase/test/Input/Test64bit.nrrd.sha512
create mode 100644 Modules/IO/ImageBase/test/itk64bitTest.cxx
create mode 100644 Modules/IO/MINC/wrapping/CMakeLists.txt
create mode 100644 Modules/IO/MINC/wrapping/itkMINCImageIO.wrap
create mode 100644 Modules/IO/Mesh/wrapping/CMakeLists.txt
create mode 100644 Modules/IO/Mesh/wrapping/itkBYUMeshIO.wrap
create mode 100644 Modules/IO/Mesh/wrapping/itkFreeSurferAsciiMeshIO.wrap
create mode 100644 Modules/IO/Mesh/wrapping/itkFreeSurferBinaryMeshIO.wrap
create mode 100644 Modules/IO/Mesh/wrapping/itkMeshFileReader.wrap
create mode 100644 Modules/IO/Mesh/wrapping/itkMeshFileWriter.wrap
create mode 100644 Modules/IO/Mesh/wrapping/itkMeshIOBase.wrap
create mode 100644 Modules/IO/Mesh/wrapping/itkMeshIOFactory.wrap
create mode 100644 Modules/IO/Mesh/wrapping/itkOBJMeshIO.wrap
create mode 100644 Modules/IO/Mesh/wrapping/itkOFFMeshIO.wrap
create mode 100644 Modules/IO/Mesh/wrapping/itkVTKPolyDataMeshIO.wrap
create mode 100644 Modules/IO/NIFTI/test/Baseline/SlopeInterceptUCHAR-midSlice.nrrd.md5
create mode 100644 Modules/IO/NIFTI/test/Baseline/SlopeInterceptUCHAR-midSlice.nrrd.sha512
create mode 100644 Modules/IO/NIFTI/test/Input/SlopeInterceptUCHAR.nii.gz.md5
create mode 100644 Modules/IO/NIFTI/test/Input/SlopeInterceptUCHAR.nii.gz.sha512
create mode 100644 Modules/IO/NIFTI/test/itkExtractSlice.cxx
delete mode 100644 Modules/Nonunit/Review/include/itkBruker2DSEQImageIO.h
delete mode 100644 Modules/Nonunit/Review/include/itkBruker2DSEQImageIOFactory.h
delete mode 100644 Modules/Nonunit/Review/include/itkDiffeomorphicDemonsRegistrationFilter.h
delete mode 100644 Modules/Nonunit/Review/include/itkESMDemonsRegistrationFunction.h
delete mode 100644 Modules/Nonunit/Review/include/itkFastSymmetricForcesDemonsRegistrationFilter.h
delete mode 100644 Modules/Nonunit/Review/include/itkMaskedMovingHistogramImageFilter.h
delete mode 100644 Modules/Nonunit/Review/include/itkMaskedRankImageFilter.h
delete mode 100644 Modules/Nonunit/Review/include/itkRankHistogram.h
delete mode 100644 Modules/Nonunit/Review/include/itkRankImageFilter.h
delete mode 100644 Modules/Nonunit/Review/src/itkBruker2DSEQImageIO.cxx
delete mode 100644 Modules/Nonunit/Review/src/itkBruker2DSEQImageIOFactory.cxx
delete mode 100644 Modules/Nonunit/Review/test/itkBruker2DSEQImageIOTest.cxx
delete mode 100644 Modules/Nonunit/Review/wrapping/itkBruker2DSEQImageIO.wrap
create mode 100644 Modules/Numerics/Optimizersv4/include/itkCommandIterationUpdatev4.h
create mode 100644 Modules/Numerics/Optimizersv4/include/itkLBFGS2Optimizerv4.h
create mode 100644 Modules/Numerics/Optimizersv4/src/itkLBFGS2Optimizerv4.cxx
create mode 100644 Modules/Numerics/Optimizersv4/test/itkLBFGS2Optimizerv4Test.cxx
create mode 100644 Modules/Registration/Metricsv4/wrapping/itkCorrelationImageToImageMetricv4.wrap
create mode 100644 Modules/Registration/Metricsv4/wrapping/itkDemonsImageToImageMetricv4.wrap
create mode 100644 Modules/Registration/Metricsv4/wrapping/itkJointHistogramMutualInformationImageToImageMetricv4.wrap
create mode 100644 Modules/Registration/PDEDeformable/include/itkDiffeomorphicDemonsRegistrationFilter.h
rename Modules/{Nonunit/Review => Registration/PDEDeformable}/include/itkDiffeomorphicDemonsRegistrationFilter.hxx (100%)
create mode 100644 Modules/Registration/PDEDeformable/include/itkESMDemonsRegistrationFunction.h
rename Modules/{Nonunit/Review => Registration/PDEDeformable}/include/itkESMDemonsRegistrationFunction.hxx (100%)
create mode 100644 Modules/Registration/PDEDeformable/include/itkFastSymmetricForcesDemonsRegistrationFilter.h
rename Modules/{Nonunit/Review => Registration/PDEDeformable}/include/itkFastSymmetricForcesDemonsRegistrationFilter.hxx (100%)
rename Modules/{Nonunit/Review => Registration/PDEDeformable}/test/itkDiffeomorphicDemonsRegistrationFilterTest.cxx (100%)
rename Modules/{Nonunit/Review => Registration/PDEDeformable}/test/itkDiffeomorphicDemonsRegistrationFilterTest2.cxx (100%)
rename Modules/{Nonunit/Review => Registration/PDEDeformable}/test/itkFastSymmetricForcesDemonsRegistrationFilterTest.cxx (100%)
create mode 100644 Modules/Remote/IsotropicWavelets.remote.cmake
create mode 100644 Modules/Remote/SimpleITKFilters.remote.cmake
create mode 100644 Modules/Remote/TBBImageToImageFilter.remote.cmake
create mode 100644 Modules/Remote/TextureFeatures.remote.cmake
create mode 100644 Modules/Segmentation/Watersheds/test/Baseline/itkIsolatedWatershedImageFilterTest.png.sha512
create mode 100644 Modules/Segmentation/Watersheds/test/Baseline/itkIsolatedWatershedImageFilterTestCloseThresholds.png.sha512
create mode 100644 Modules/Segmentation/Watersheds/test/Baseline/itkTobogganImageFilterTest.png.sha512
delete mode 100644 Modules/ThirdParty/DCMTK/README
create mode 100644 Modules/ThirdParty/DCMTK/README.md
delete mode 100644 Modules/ThirdParty/DCMTK/WindowsBuild/CMakeLists.txt
create mode 100644 Modules/ThirdParty/GoogleTest/CMakeLists.txt
create mode 100755 Modules/ThirdParty/GoogleTest/UpdateFromUpstream.sh
create mode 100644 Modules/ThirdParty/GoogleTest/itk-module-init.cmake
create mode 100644 Modules/ThirdParty/GoogleTest/itk-module.cmake
delete mode 100644 Modules/ThirdParty/HDF5/src/README-ITK.txt
create mode 100644 Modules/ThirdParty/HDF5/src/README.md
delete mode 100644 Modules/ThirdParty/KWSys/README.kwsys
create mode 100644 Modules/ThirdParty/KWSys/README.md
create mode 100644 Modules/ThirdParty/KWSys/src/KWSys/testDirectory.cxx
delete mode 100644 Modules/ThirdParty/KWSys/src/KWSys/testIOS.cxx
delete mode 100644 Modules/ThirdParty/MetaIO/src/MetaIO/src/Copyright.txt
create mode 100644 Modules/ThirdParty/VNL/README.md
delete mode 100644 Modules/ThirdParty/VNL/README.vxl
create mode 100644 Modules/ThirdParty/VNL/src/vxl/config/cmake/doxygen/doxy-notes.txt
create mode 100644 Modules/ThirdParty/libLBFGS/CMakeLists.txt
create mode 100644 Modules/ThirdParty/libLBFGS/include/lbfgs.h
create mode 100644 Modules/ThirdParty/libLBFGS/itk-module.cmake
create mode 100644 Modules/ThirdParty/libLBFGS/src/CMakeLists.txt
create mode 100644 Modules/ThirdParty/libLBFGS/src/arithmetic_ansi.h
create mode 100644 Modules/ThirdParty/libLBFGS/src/arithmetic_sse_double.h
create mode 100644 Modules/ThirdParty/libLBFGS/src/arithmetic_sse_float.h
create mode 100644 Modules/ThirdParty/libLBFGS/src/lbfgs.c
delete mode 100644 Modules/ThirdParty/pygccxml/src/README-ITK.txt
create mode 100644 Modules/ThirdParty/pygccxml/src/README.md
delete mode 100644 Modules/ThirdParty/pygccxml/src/pygccxml/binary_parsers/__init__.py
delete mode 100644 Modules/ThirdParty/pygccxml/src/pygccxml/binary_parsers/get_dll_exported_symbols.py
delete mode 100644 Modules/ThirdParty/pygccxml/src/pygccxml/binary_parsers/parsers.py
delete mode 100644 Modules/ThirdParty/pygccxml/src/pygccxml/binary_parsers/undname.py
create mode 100644 Modules/ThirdParty/pygccxml/src/pygccxml/declarations/byte_info.py
create mode 100644 Modules/ThirdParty/pygccxml/src/pygccxml/declarations/elaborated_info.py
create mode 100644 Modules/ThirdParty/pygccxml/src/pygccxml/declarations/runtime_errors.py
create mode 100644 Modules/ThirdParty/pygccxml/src/pygccxml/parser/declarations_joiner.py
create mode 100644 Modules/ThirdParty/pygccxml/src/pygccxml/utils/xml_generators.py
create mode 100644 PULL_REQUEST_TEMPLATE.md
create mode 100644 README.md
delete mode 100644 README.txt
create mode 100644 Testing/Data/Baseline/BasicFilters/HeadMRVolumeMaximumProjection0.mha.sha512
create mode 100644 Testing/Data/Baseline/BasicFilters/HeadMRVolumeMaximumProjection1.mha.sha512
create mode 100644 Testing/Data/Baseline/BasicFilters/HeadMRVolumeMaximumProjection2D0.mha.sha512
create mode 100644 Testing/Data/Baseline/IO/cthead1-unitspacing.tif.md5
create mode 100644 Testing/Data/Baseline/IO/cthead1-unitspacing.tif.sha512
create mode 100644 Testing/Data/Baseline/itkDCMTKColorImage.png.md5
create mode 100644 Testing/Data/Baseline/itkDCMTKColorImage.png.sha512
create mode 100644 Testing/Data/Baseline/itkDCMTKSeriesImageOrientationWrite1.mha.md5
create mode 100644 Testing/Data/Baseline/itkDCMTKSeriesImageOrientationWrite1.mha.sha512
create mode 100644 Testing/Data/Input/DicomImageOrientationTest/ImageOrientation.1.dcm.md5
create mode 100644 Testing/Data/Input/DicomImageOrientationTest/ImageOrientation.1.dcm.sha512
create mode 100644 Testing/Data/Input/DicomImageOrientationTest/ImageOrientation.2.dcm.md5
create mode 100644 Testing/Data/Input/DicomImageOrientationTest/ImageOrientation.2.dcm.sha512
create mode 100644 Testing/Data/Input/DicomImageOrientationTest/ImageOrientation.3.dcm.md5
create mode 100644 Testing/Data/Input/DicomImageOrientationTest/ImageOrientation.3.dcm.sha512
create mode 100644 Testing/Data/Input/RGBDicomTest.dcm.md5
create mode 100644 Testing/Data/Input/RGBDicomTest.dcm.sha512
create mode 100644 Utilities/Doxygen/serviceWorker.js.in
rename Utilities/Maintenance/{README => README.md} (100%)
create mode 100644 Wrapping/Generators/Python/Tests/MeanImageFilterFunctionCall.py
create mode 100644 Wrapping/images/MeanImageFilterFunctionCall.png.md5
create mode 100644 Wrapping/images/MeanImageFilterFunctionCall.png.sha512
create mode 100644 Wrapping/images/cthead1UC.png.md5
create mode 100644 Wrapping/images/cthead1UC.png.sha512
delete mode 100644 circle.yml
delete mode 100644 data/.ExternalData/MD5/0067daa32b0ede1a20e350bd646f808b
create mode 100644 data/.ExternalData/MD5/013c7d3169641ff889c590605fec5533
create mode 100644 data/.ExternalData/MD5/0320a4dd7039a3b39e0437f04e2302d1
create mode 100644 data/.ExternalData/MD5/033189a0a6035962ad5d8928e97dc7a8
delete mode 100644 data/.ExternalData/MD5/082be88d8710fed65c2b130b6e3561aa
create mode 100644 data/.ExternalData/MD5/08d6dac958764a05b02eb2af1424aa3c
create mode 100644 data/.ExternalData/MD5/09852e1fb126d77599f7955c2012bed9
create mode 100644 data/.ExternalData/MD5/0cbf87a5dd1c5013f6a21f431667900a
delete mode 100644 data/.ExternalData/MD5/0d4600a67572c5e88b5b1849613102ff
create mode 100644 data/.ExternalData/MD5/1089c90a810277f49cd25856bbacc26d
create mode 100644 data/.ExternalData/MD5/11305e581c031544e05ae13b96ae3d6a
create mode 100644 data/.ExternalData/MD5/11df885ebc8453651c0dbd70838c31f3
create mode 100644 data/.ExternalData/MD5/12aa8b8fb552a1fa1cfcfc7086c21757
delete mode 100644 data/.ExternalData/MD5/133e9ae8117175e1c13916f7ba9bb1d9
delete mode 100644 data/.ExternalData/MD5/13c4f808a23354b7357ba1b0e30cdc6c
delete mode 100644 data/.ExternalData/MD5/13cd69b2cbc6980d0ce7abba66c7fa0d
create mode 100644 data/.ExternalData/MD5/14e5420d4e125082f73690dbab289be6
create mode 100644 data/.ExternalData/MD5/153daba74f22a488a5a0610506331215
delete mode 100644 data/.ExternalData/MD5/1ac3b5cad012a3d3cc41638494ccbb8c
delete mode 100644 data/.ExternalData/MD5/1b2166bc4fb73ed378be389cd9db544e
create mode 100644 data/.ExternalData/MD5/1c84d9617b019147f77ff17199786e93
create mode 100644 data/.ExternalData/MD5/201104de65ced0607ba62e995251a7ea
create mode 100644 data/.ExternalData/MD5/2512e2b9e67bcaa95112510c354e116d
delete mode 100644 data/.ExternalData/MD5/2547b3bec44324176fea022ff43ed591
create mode 100644 data/.ExternalData/MD5/27bc6586044457622fa9a1d4e6f5c266
create mode 100644 data/.ExternalData/MD5/2912660762979107d5f76d1dc5b97487
create mode 100644 data/.ExternalData/MD5/291e687225edebcd351ede8bf13d0b2c
delete mode 100644 data/.ExternalData/MD5/2a6e7fc9cfa4cdf71a36675a86ae8da8
delete mode 100644 data/.ExternalData/MD5/2e715e7a363d7a5ea9af4165f71b455c
create mode 100644 data/.ExternalData/MD5/2ec5c16530e1aece41932f00231db847
create mode 100644 data/.ExternalData/MD5/2f538837ace3a1a7ba56cb0d955f4a30
create mode 100644 data/.ExternalData/MD5/30b2fce9bc92fd9eafd9d4e8dd82c130
create mode 100644 data/.ExternalData/MD5/33aa473b7df3faacf5fa0976ab4205d3
create mode 100644 data/.ExternalData/MD5/3772bd318eeb6d624ce7084ec4173eee
delete mode 100644 data/.ExternalData/MD5/377e602800c18624d9bc7a32fa706b97
delete mode 100644 data/.ExternalData/MD5/3978215a4bd58093ceae6888d6ea8525
create mode 100644 data/.ExternalData/MD5/3a532b7fc52f547773597e6dca70dffc
create mode 100644 data/.ExternalData/MD5/3a7d9520aac244d878a4cf4ea6940922
create mode 100644 data/.ExternalData/MD5/3b34d5c29a3095348073e0b6084f9f8a
create mode 100644 data/.ExternalData/MD5/41f9a4ca102661a22d00303949cfcf07
delete mode 100644 data/.ExternalData/MD5/43e7bf82e86355babdbcbe598ab1a5a9
create mode 100644 data/.ExternalData/MD5/449ca444a714efab611e2f7fb5fc2e05
create mode 100644 data/.ExternalData/MD5/483b85625872d29298802122d3cf22cc
create mode 100644 data/.ExternalData/MD5/49ae473d977c42fda8805ae9caef8dd8
create mode 100644 data/.ExternalData/MD5/4a4d47d29f3a4484e2d7cf01409c5615
create mode 100644 data/.ExternalData/MD5/4b680b630223022cb036a3d425aa8a04
create mode 100644 data/.ExternalData/MD5/4c3cbd8f6f25f884e0635ab324d977a8
create mode 100644 data/.ExternalData/MD5/4c5176485da86c5a33b734aeb9bba390
create mode 100644 data/.ExternalData/MD5/506916dcb62b087048def7f2b6a595cc
delete mode 100644 data/.ExternalData/MD5/51f1fe065e477500d45c305d21743ecf
create mode 100644 data/.ExternalData/MD5/526e86825d47b8278b1a69d35c39409f
delete mode 100644 data/.ExternalData/MD5/52de5c91a0a08b964e4fc9a9bef1965d
create mode 100644 data/.ExternalData/MD5/52eb9717d0f28283328556fd57bb403f
create mode 100644 data/.ExternalData/MD5/53faff1436f096057bd23cafc1b66360
create mode 100644 data/.ExternalData/MD5/565f590fdc32d1d7236eb8b576a787ae
create mode 100644 data/.ExternalData/MD5/59a2730bb309fa7a4131969e81a134a4
create mode 100644 data/.ExternalData/MD5/59ae96a8485fd02ed8acfe281a9b937b
create mode 100644 data/.ExternalData/MD5/5ad474d9f562e20907f77dbf4ff51e0c
create mode 100644 data/.ExternalData/MD5/5ae74d0390924e1d58db04f8de895f6a
create mode 100644 data/.ExternalData/MD5/5bb4646c8660bc41d864005500ceef44
delete mode 100644 data/.ExternalData/MD5/5ca62eb3942ad84577335a37ded42cce
create mode 100644 data/.ExternalData/MD5/5cd36b738657adcf824558429f7bf930
create mode 100644 data/.ExternalData/MD5/5cd48d64de3f6119fe890c759c604aa7
create mode 100644 data/.ExternalData/MD5/5e9f45edd929308ebf3845abfcf93678
delete mode 100644 data/.ExternalData/MD5/5f12321caf28dc38476ca6837060d1c2
delete mode 100644 data/.ExternalData/MD5/60e2b992941a86684363fee32f836bb0
create mode 100644 data/.ExternalData/MD5/63c36591e15a7694831f468a36fb8089
create mode 100644 data/.ExternalData/MD5/646a912646b039a859903d934fafbacd
delete mode 100644 data/.ExternalData/MD5/64c6cd3fe41bcf784c8e4bb7c0a0eb13
create mode 100644 data/.ExternalData/MD5/67494fbddf631d1ad4e557f6010d0293
delete mode 100644 data/.ExternalData/MD5/67d709c91df48ddc0613781130fa934e
create mode 100644 data/.ExternalData/MD5/6856cef94e0dac1ebfdb2ed450691d9e
create mode 100644 data/.ExternalData/MD5/691a82e261791eefd9b8f9ee2d4e4538
delete mode 100644 data/.ExternalData/MD5/6bffad569053e24c9ffae43c36b3c4c8
create mode 100644 data/.ExternalData/MD5/6f2b0a157efc77e78817b084ed5496fb
delete mode 100644 data/.ExternalData/MD5/70d4f0f78345be57a0bbfe32b26ab57f
create mode 100644 data/.ExternalData/MD5/73232c180a10bb21e19b277c692e13e9
delete mode 100644 data/.ExternalData/MD5/77efce1a1f2991f7562192e493ad43f7
create mode 100644 data/.ExternalData/MD5/7ba915a9d1fabb6cd7aed5bb0ac7bf7d
create mode 100644 data/.ExternalData/MD5/7d4d0335c12b4676140e907bf493d72b
create mode 100644 data/.ExternalData/MD5/7ec13347e15145a58075e0b8b7a308fd
delete mode 100644 data/.ExternalData/MD5/815661c09054fa7724282a252617061f
create mode 100644 data/.ExternalData/MD5/822d5efacd963ea2e4f8db3b82ccfffc
create mode 100644 data/.ExternalData/MD5/84b3f277b827fb54336f8a55a218fbcb
delete mode 100644 data/.ExternalData/MD5/87ac20d6bc6602ee3781ed93691f418a
copy Testing/Data/Input/DCB120604.t61/11/pdata/1/meta => data/.ExternalData/MD5/8800b514f88b18b47d3863791f7502bf (100%)
create mode 100644 data/.ExternalData/MD5/8ab5749067c1452f4c3ac7cd2b48f72a
create mode 100644 data/.ExternalData/MD5/8b35ff586971ae9a4e9610454ad0e79d
create mode 100644 data/.ExternalData/MD5/8cc0409a20b74a5a58c0472e94ab9f89
delete mode 100644 data/.ExternalData/MD5/8cf5082628fa7b03770cebd8b79ecf1c
delete mode 100644 data/.ExternalData/MD5/8e84ddc50e1790fd31cb5a2945ae9314
create mode 100644 data/.ExternalData/MD5/906a457e893f3a6e385724f2902b0aaa
create mode 100644 data/.ExternalData/MD5/918fd28f3e30bdf950794904a8defb9f
delete mode 100644 data/.ExternalData/MD5/93989ec805c7c313e4dafc5f7cd4f5dc
create mode 100644 data/.ExternalData/MD5/9653cf178d82b2989f6012a89b782445
create mode 100644 data/.ExternalData/MD5/978dd5bb402637b949a17e2d39473595
create mode 100644 data/.ExternalData/MD5/97da7cc086d171e5496377d6d2e18bc3
delete mode 100644 data/.ExternalData/MD5/986024dc35957780046c497c91e93c4a
create mode 100644 data/.ExternalData/MD5/995fb0b34341aecc9da280253f199d42
delete mode 100644 data/.ExternalData/MD5/998269ab74069be1f2fe7d24e01fb33a
create mode 100644 data/.ExternalData/MD5/9a355e69f503645f22053d0cb2c199a9
delete mode 100644 data/.ExternalData/MD5/9a5db0c58fe82db02ccb3fce6786e292
create mode 100644 data/.ExternalData/MD5/9b784ba9db935382f9ab2e133358533d
delete mode 100644 data/.ExternalData/MD5/9e0f7f8a8a8b269a39286ef10fe4de27
create mode 100644 data/.ExternalData/MD5/9e45bc9de55389fac3cc513ed22829f8
delete mode 100644 data/.ExternalData/MD5/9e880269bfbfdf952da80c3cd937bef3
create mode 100644 data/.ExternalData/MD5/a049f9e469a4e81aedeef337d87f7250
delete mode 100644 data/.ExternalData/MD5/a09b06362e5fc43a79005d44261185bd
create mode 100644 data/.ExternalData/MD5/a1c0a8816b07bbf63bb67104aaa86a9c
create mode 100644 data/.ExternalData/MD5/a2032d8fad6a253973d1f7038cec1b14
delete mode 100644 data/.ExternalData/MD5/a2aeabe2d860519d551fee1c2208e6ee
delete mode 100644 data/.ExternalData/MD5/a2eb9116de0f28eb6c04049eca4ef19b
create mode 100644 data/.ExternalData/MD5/a4f5096877cb3b62c2b384499048684d
create mode 100644 data/.ExternalData/MD5/a58abbc103e4d07fbf4c0fc7e44b7d37
delete mode 100644 data/.ExternalData/MD5/a6a231692f5fe71c7f88d0cdaf3ec99b
create mode 100644 data/.ExternalData/MD5/aa4d6cfc02e99b964166967c15686a8d
delete mode 100644 data/.ExternalData/MD5/aab8c9e2a9da8da53a800e5cff37eab4
create mode 100644 data/.ExternalData/MD5/aecd5ea7ec01bef77c4443636f784b4f
delete mode 100644 data/.ExternalData/MD5/b00c89d9ce2ce0ab3638e0d962c923da
create mode 100644 data/.ExternalData/MD5/b0ca5d43a7a783adf68c9d04dd3f5c8d
delete mode 100644 data/.ExternalData/MD5/b13acc646d0db0ab507025735d837f25
create mode 100644 data/.ExternalData/MD5/b337273ad4c66c4b3212bd6d4f5f3875
create mode 100644 data/.ExternalData/MD5/b8cacd99f9284149d1df2b53268687a4
create mode 100644 data/.ExternalData/MD5/b907aeb6d3f0a046362dd74a0d54c279
create mode 100644 data/.ExternalData/MD5/b91d05b2ec4b57c166596644ba1b1a05
create mode 100644 data/.ExternalData/MD5/b97acda02bc6dde397182c4452adb83a
create mode 100644 data/.ExternalData/MD5/ba448958b65525466fdbe13c8a347dcf
create mode 100644 data/.ExternalData/MD5/ba6c4d4a85c4752a9204c4b2a8c270e6
create mode 100644 data/.ExternalData/MD5/c23d09928351277145afd8d5e30dd2f4
create mode 100644 data/.ExternalData/MD5/c2c7108d9677c3cd61e2abc7137e9469
create mode 100644 data/.ExternalData/MD5/c2ccfc225bf10d0fe0357726f9c1accb
create mode 100644 data/.ExternalData/MD5/c366ce04db1592ca443e846fd8f2120f
create mode 100644 data/.ExternalData/MD5/c69814d06a545a3d8618e58a260037e5
delete mode 100644 data/.ExternalData/MD5/c7a07dedfa15d7025e13d4b7e2e3f318
delete mode 100644 data/.ExternalData/MD5/ca0ef78bc11b6e0fd8b4b2bd2d061819
create mode 100644 data/.ExternalData/MD5/cca0407a9f6708d0bd7383c63859f047
delete mode 100644 data/.ExternalData/MD5/ce8a777b753d31e2cf8555555da723b4
delete mode 100644 data/.ExternalData/MD5/d60d5092d022ed88bdb57404260540e7
create mode 100644 data/.ExternalData/MD5/d73ad186fc8384186c5b4f6f231677e3
delete mode 100644 data/.ExternalData/MD5/d77cfc74df8ea32d5cb379792fd8e0bb
create mode 100644 data/.ExternalData/MD5/d7b9cf1f94c6d456c38c7c15f0d6e177
create mode 100644 data/.ExternalData/MD5/d9d8a6f61ed935787ed84308b5680597
create mode 100644 data/.ExternalData/MD5/db201e995a528ddc5c3d9f4eddb69008
delete mode 100644 data/.ExternalData/MD5/dcb2687c19f51e4744e29e46066e0ae7
create mode 100644 data/.ExternalData/MD5/dd507b015af09d36cee43914295a7c9d
create mode 100644 data/.ExternalData/MD5/df9d9d13bf7b74d017c800cf67735fe9
create mode 100644 data/.ExternalData/MD5/e109bbba64f7de2bda08a5f125ca776e
create mode 100644 data/.ExternalData/MD5/e1f49e7c2d004e8538898a68f7e08917
create mode 100644 data/.ExternalData/MD5/e2f3ae52040bd1980138ec1ce7860589
delete mode 100644 data/.ExternalData/MD5/e3847727717b849a08ec9b561512b01e
create mode 100644 data/.ExternalData/MD5/e40da5621068b2e2f454e02d46d3b19b
create mode 100644 data/.ExternalData/MD5/e5afc2d6bf2ef67c08155e21610b66b2
delete mode 100644 data/.ExternalData/MD5/e5f4ff3484882bbe93ed6c827b716645
create mode 100644 data/.ExternalData/MD5/e7b7fe56623cc4ecdd1f0c85a05a6182
delete mode 100644 data/.ExternalData/MD5/e90ba239ce39a18e05adc0d0ea1a5d35
create mode 100644 data/.ExternalData/MD5/e91f4ce7d8fc14834054ba9eb577ad08
create mode 100644 data/.ExternalData/MD5/eac2fb7675945bd76aecd867f7330c59
create mode 100644 data/.ExternalData/MD5/eb7c2410ab4c2a6f1116e52d9e2b42a0
delete mode 100644 data/.ExternalData/MD5/ebc6f82318338cd6f711b49be667f55f
delete mode 100644 data/.ExternalData/MD5/ebf123e67401ec93877298d6ef53909e
create mode 100644 data/.ExternalData/MD5/ec3cf5671f67feb828325b444d891370
create mode 100644 data/.ExternalData/MD5/ecf0225415e798590d8279a8a123d5f9
delete mode 100644 data/.ExternalData/MD5/ee87a6fdee961da3da7e8bd3700fea0c
delete mode 100644 data/.ExternalData/MD5/ef0fc3dbff662e3831d2942d1b0c3bc5
create mode 100644 data/.ExternalData/MD5/ef21849964126273741031b068f77183
delete mode 100644 data/.ExternalData/MD5/f291c30658c3e4d83d78b5d2e2aac92c
delete mode 100644 data/.ExternalData/MD5/f521bd34b40a7300507aa2fe7e4052f9
delete mode 100644 data/.ExternalData/MD5/f61982917bbcddb7c2629373163293b7
delete mode 100644 data/.ExternalData/MD5/f9380ab1b77d90a9b02cd4b11b3a706f
create mode 100644 data/.ExternalData/MD5/f9691da0bfc865a2a67e649d7040ef4b
create mode 100644 data/.ExternalData/MD5/fcbef0cacb7a4aa106083d54f5c07170
create mode 100644 data/.ExternalData/MD5/ff1ae4538de5d7eb3c0f08abc9ed3c7e
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/insighttoolkit.git
More information about the debian-med-commit
mailing list